Mechanisms in plant growth-promoting rhizobacteria that enhance legume–rhizobial symbioses

Nitrogen fixation is an important biological process in terrestrial ecosystems and for global crop production. Legume nodulation and N₂ fixation have been improved using nodule-enhancing rhizobacteria (NER) under both regular and stressed conditions. The positive effect of NER on legume–rhizobia symbiosis can be facilitated by plant growth-promoting (PGP) mechanisms, some of which remain to be identified. NER that produce aminocyclopropane-1-carboxylic acid deaminase and indole acetic acid enhance the legume–rhizobia symbiosis through (i) enhancing the nodule induction, (ii) improving the competitiveness of rhizobia for nodulation, (iii) prolonging functional nodules by suppressing nodule senescence and (iv) upregulating genes associated with legume–rhizobia symbiosis. The means by which these processes enhance the legume–rhizobia symbiosis is the focus of this review. A better understanding of the mechanisms by which PGP rhizobacteria operate, and how they can be altered, will provide opportunities to enhance legume–rhizobial interactions, to provide new advances in plant growth promotion and N₂ fixation.     

Advances in proteomic technologies and their scope of application in understanding plant–pathogen interactions

Proteomics, one of the major tools of ‘omics’ is evolving phenomenally since the development and application of two-dimensional gel electrophoresis coupled with mass spectrometry at the end of twentieth century. However, the adoption and application of advanced proteomic technologies in understanding plant–pathogen interactions are far less, when compared to their application in other related fields of systems biology. Hence, this review is diligently focused on the advances in various proteomic approaches and their gamut of applications in different facets of phyto-pathoproteomics. Especially, the scope and application of proteomics in understanding fundamental concepts of plant–pathogen interactions such as identification of pathogenicity determinants (effector proteins), disease resistance proteins (resistance and pathogenesis-related proteins) and their regulation by post-translational modifications have been portrayed. This review, for the first time, presents a critical appraisal of various proteomic applications by assessing all phyto-pathoproteomics-related research publications that were published in peer-reviewed journals, during the period 2000–2016. This assessment has revealed the present status and contribution of proteomic applications in different categories of phyto-pathoproteomics, namely, cellular components, host–pathogen interactions, model and non-model plants, and utilization of different proteomic approaches. Comprehensively, the analysis highlights the burgeoning application of global proteome approaches in various crop diseases, and demand for acceleration in deploying advanced proteomic technologies to thoroughly comprehend the intricacies of complex and rapidly evolving plant–pathogen interactions.     

Winter climate change in plant–soil systems: summary of recent findings and future perspectives

The winter climate is changing in many parts of the world, and it is predicted that winter climate change will modify the structure and function of plant–soil systems. An understanding of these changes and their consequences in terrestrial ecosystems requires knowledge of the linkage between above- and below-ground components as well as the species interactions found in plant–soil systems, which have important implications for biogeochemical cycles. However, winter climate-change studies have focused on only a part of the ecosystem or ecological process. We summarize here recent findings related to the effects of winter climate and its changes on soil nitrogen (N) dynamics, greenhouse gas (N₂O) emissions from the soil, N use by individual plants, vegetation development, and interactions between vegetation and pollinators to generate an integrative understanding of the response of the plant–soil system to winter climate change. This review indicates that the net effects on plants, soil microbes, pollinators, and the associated biogeochemical cycles are balanced among several processes and are highly variable depending on the context, such as the target species/functional group, original winter condition of the habitat, and type of climate change. The consequences of winter climate change for species interactions among plants, associated animals, and biogeochemical cycles are largely unknown. For further research, a large-scale comparative study to measure ecosystem-level functions is important, especially in less-cold ecosystems.     

Spatially heterogeneous trends in nearshore and offshore chlorophyll a concentrations in lakes Michigan and Huron (1998–2013)

1. Nutrient abatement programmes have been successfully implemented around the globe to reduce nutrient loading into aquatic ecosystems. Concurrently, the worldwide spread of invasive filter feeders, such as dreissenid mussels, may alter nutrient dynamics in invaded systems by sequestering nutrients away from pelagic zones and reducing primary production in offshore areas. Such is the case in the Laurentian Great Lakes of North America, where decades of nutrient abatement and the establishment of dreissenid mussels have seemingly resulted in more oligotrophic conditions and altered spatial patterns of nutrient availability and primary production.
2. Recent studies have focused on whole lake trends in primary production despite spatial differences in tributary inputs, bathymetry, and other environmental conditions that can affect primary production in nearshore areas. Thus, we hypothesised that trends in nearshore chlorophyll concentrations in different areas may diverge in a manner consistent with spatial differences in nutrient input. To evaluate these differences in surface chlorophyll responses, we assessed temporal trends in four different areas of Lake Michigan and three different areas of Lake Huron.
3. We hypothesised that in lakes Huron and Michigan, nearshore zones have experienced slower declines of chlorophyll concentrations relative to offshore zones. To assess this hypothesis, we estimated temporal trends of surface water chlorophyll concentrations (a proxy for primary production) from satellite imagery from 1998 to 2013. We calculated average surface chlorophyll concentrations for 10-m depth intervals ranging from the shore (0–10 m) to offshore (>90 m) during representative months of May, July, and September. We then analysed these data to determine if long-term trends in surface chlorophyll varied by season, proximity to the shoreline, and water depth.
4. The rates of annual change in chlorophyll concentrations in nearshore areas were markedly different to offshore trends in both lakes. Chlorophyll concentrations declined overtime in offshore areas, but nearshore chlorophyll concentrations were either stable (in May) or increased (in July and September) throughout the time series.
5. Differences in chlorophyll concentrations among areas were prominent in Lake Michigan. While differences between the northern and southern basin have been previously documented, trends in chlorophyll concentrations also differed between the eastern and western sides of Lake Michigan. Despite similar bathymetry and geographic features to Lake Michigan, regional trends were not observed in Lake Huron.
6. The results of this study are generally consistent with the nearshore shunt hypothesis, which predicts that dreissenid filtering, nutrient re-suspension, and continued nutrient loading from tributaries can cause an increase in primary production in nearshore areas during periods of offshore oligotrophication. Thus, the localised effects of nutrient abatement programmes in a given lake will be influenced by complex interactions between lake bathymetry and the presence of non-native filter feeding organisms.

     

Neurophysiological foundations and practical realizations of the brain–machine interfaces in the technology in neurological rehabilitation

The brain–computer interface (BCI) technology, based on the registration and interpretation of EEG, has recently become one of the most popular developments in neuroscience and psychophysiology. This is due not only to the intended future use of these technologies in many areas of practical human activity, but also to the fact that BCI is a completely new paradigm in psychophysiology, which allows testing hypotheses about the possibilities of the human brain to the development of skills of interaction with the outside world without the mediation of the motor system, i.e., only with the help of voluntary modulation of EEG generators. This paper examines the theoretical and experimental basis, the current state, and the prospects of development of training, communicational, and assisting complexes based on BCI to control them without muscular effort on the basis of decoding mental commands detected in the EEG of patients with severely impaired speech and motor system.     

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

Plant-associated microorganisms fulfill important functions for plant growth and health. Direct plant growth promotion by microbes is based on improved nutrient acquisition and hormonal stimulation. Diverse mechanisms are involved in the suppression of plant pathogens, which is often indirectly connected with plant growth. Whereas members of the bacterial genera Azospirillum and Rhizobium are well-studied examples for plant growth promotion, Bacillus, Pseudomonas, Serratia, Stenotrophomonas, and Streptomyces and the fungal genera Ampelomyces, Coniothyrium, and Trichoderma are model organisms to demonstrate influence on plant health. Based on these beneficial plant–microbe interactions, it is possible to develop microbial inoculants for use in agricultural biotechnology. Dependent on their mode of action and effects, these products can be used as biofertilizers, plant strengtheners, phytostimulators, and biopesticides. There is a strong growing market for microbial inoculants worldwide with an annual growth rate of approximately 10%. The use of genomic technologies leads to products with more predictable and consistent effects. The future success of the biological control industry will benefit from interdisciplinary research, e.g., on mass production, formulation, interactions, and signaling with the environment, as well as on innovative business management, product marketing, and education. Altogether, the use of microorganisms and the exploitation of beneficial plant–microbe interactions offer promising and environmentally friendly strategies for conventional and organic agriculture worldwide.     

Enhanced atrazine removal by hydrophyte–bacterium associations and in vitro screening of the isolates for their plant growth-promoting potential

Emergent hydrophytes Acorus calamus, Typha latifolia, and Phragmites karka and epiphytic root bacteria isolated from their rhizoplanes were exposed to atrazine (5 and 10 mg l^?1) individually and in plant-bacterium combination for 15 days hydroponically. It was observed that A. calamus-Pseudomonas sp. strain, the ACB combination, was best in decontamination, showing 91% and 87% removal of 5 and 10 mg l^?1 atrazine. Plant-bacterium association led to significant increase in atrazine decontamination as compared to decontamination by either plant or bacterium alone, indicating a synergistic action of the hydrophytes and isolates which led to enhanced atrazine removal. To the best of our knowledge this is the first report on the potential of plant–bacterium combinations for atrazine decontamination. The isolates showed augmented growth in the presence of plants and were able to alleviate atrazine stress in them. These isolates exhibited plant growth-promoting traits such as auxin, siderophore, Poly(3–hydroxybutyric acid)/succinogycan, ammonia, catalase production and solubilization of inorganic phosphate in vitro. The use of plant-bacterium mutualistic symbiosis for atrazine mitigation is a relatively simple, inexpensive, and clean technique and this phytoremediation-rhizoremediation combination is suggested to be tried on field to establish their potential for clean-up of contaminated sites.     

Tumour–stroma interactions in carcinogenesis: Basic aspects and perspectives

In contrast to the conventional notion regarding tumour development as a cell autonomous process in which the major participants were the cancer cells, increasing evidence attributes important role in the stromal components, namely fibroblasts, and view the tumour as a heterogenous mixture of different cell types. These different types of cells, being cancer cells, fibroblasts, endothelial cells, and others, interact reciprocally and play an almost equally important role in the manifestation of certain aspects of the malignant phenotype. The elucidation of the mechanistic base of such interactions, besides the contribution to understand fundamental aspects of tumour cell biology, promises important applications in diagnosis, prognosis and therapy of the disease. (Mol Cell Biochem 261: 117–122, 2004)     

Streptavidin–biotin technology: improvements and innovations in chemical and biological applications

Streptavidin and its homologs (together referred to as streptavidin) are widely used in molecular science owing to their highly selective and stable interaction with biotin. Other factors also contribute to the popularity of the streptavidin–biotin system, including the stability of the protein and various chemical and enzymatic biotinylation methods available for use with different experimental designs. The technology has enjoyed a renaissance of a sort in recent years, as new streptavidin variants are engineered to complement native proteins and novel methods of introducing selective biotinylation are developed for in vitro and in vivo applications. There have been notable developments in the areas of catalysis, cell biology, and proteomics in addition to continued applications in the more established areas of detection, labeling and drug delivery. This review summarizes recent advances in streptavidin engineering and new applications based on the streptavidin–biotin interaction.     

PROFILE: Gerhard Hartwich (1926–1998)

Systematic Parasitology -