The estimation of the fitness function from two samples taken from a population

The fitness of animals subjected to natural selection can be defined as the probability of surviving selection for a given interval of time, or some convenient multiple of this probability. If the fitness of animals is related to some quantitative variable X (such as size) then this relationship is expressed mathematically in the fitness function w(x) and this function can be estimated by comparing the distribution of X in samples taken before and after selection. In this note five methods for estimating the fitness function on the basis of samples from a large population are discussed. They are compared on three previously published sets of data and as a result estimation according to weighted multiple regression is recommended.     

Taxonomic reassessment ofBolonia Meunier, 1886 (trace fossil) based on new material from the type area in Boulonnais, northern France

The ichnospeciesBolonia lata Meunier, 1886 is a straight, bilobate trace fossil with a somewhat heart-shaped outline in cross-section. It has previously been reported from various localities mainly from the Jurassic by different authors under various names such asGyrochorte, Scolicia, orProtovirgularia. Because none of these previous determinations fully agrees with the trace fossils’ morphology, the ‘forgotten name’ is reintroduced, and due to a lack of type material a neotype from the type area of Boulonnais, France is proposed. The ichnogenus is currently represented only by one ichnospecies,B. lata Meunier, 1886. Diagnostic criteria ofBolonia and morphologically related trace fossils such asScolicia, Gyrochorte, Bichordites, “Taphrhelminthopsis nelsoni”, andProtovirgularia are discussed, the synonymy ofB. lata is provided and finally a discussion on the possible producer ofBolonia is given.      

Systematic revision of the endemic deerHaploidoceros n. gen.mediterraneus (Bonifay, 1967) (Mammalia, Cervidae) from the Middle Pleistocene of Southern France

New osteological material of the endemic deer from Lunel-Viel and l’Igue des Rameaux (France) reveals its evolutionary specialization, and gives reason for establishing a new genus,Haploidoceros, with a single speciesH. mediterraneus (Bonifay, 1967). The cranial proportions and morphology suggest thatH. mediterraneus is close to the Late Villafranchian speciesMetacervocerus rhenanus, which may be a possible forerunner of the deer under study. The evolutionary origin ofH. mediterraneus took place in the Iberian glacial refugia during the “Mindel glaciation” of the early Middle Pleistocene. The North-East distribution ofH. mediterraneus was limited by unfavorable climate influence of the Arctic and Alpine Ice Shields.      

Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor,II

In our previous report [Aita, T., Morinaga, S., Hosimi, Y., 2004. Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor I. Bull. Math. Biol. 66, 1371–1403], an analogy between thermodynamics and adaptive walks on a Mt. Fuji-type fitness landscape in an artificial selection system was presented. Introducing the ‘free fitness’ as the sum of a fitness term and an entropy term and ‘evolutionary force’ as the gradient of free fitness on a fitness coordinate, we demonstrated that the adaptive walk (=evolution) is driven by the evolutionary force in the direction in which free fitness increases. In this report, we examine the effect of various modifications of the original model on the properties of the adaptive walk. The modifications were as follows: first, mutation distance d was distributed obeying binomial distribution; second, the selection process obeyed the natural selection protocol; third, ruggedness was introduced to the landscape according to the NK model; fourth, a noise was included in the fitness measurement. The effect of each modification was described in the same theoretical framework as the original model by introducing ‘effective’ quantities such as the effective mutation distance or the effective screening size.     

Taxonomic status of the hominid mandible KNM-ER TI 13150 from the middle pliocene of tabarin,in Kenya

A partial mandible with two molars intact was recovered between 1981 and 1984 from deposits of the Middle Pliocene at Tabarin, in Kenya. It has been described and assigned toAustralopithecus cf.afarensis Johanson, White, andCoppens, 1978, with the condition that if ‘A. afarensis’ is revised, then the attribution may change. The taxon ‘A. afarensis’ was found to be invalid and was revised. The smaller specimens of ‘A. afarensis,’ to which the Tabarin mandible was said to be similar, were redescribed asHomo antiquus Ferguson, 1984. Since the Tabarin mandible andH. antiquus are successive transients of the same gens and are allopatric, the Tabarin hominid population is described as an earlier chronosubspecies,Homo antiquus praegens ssp. n.     

Inhibition ofd-alanyl-d-alanine ligase in different bacterial species by amino phosphonic acids

A comparative study was performed on the kinetic properties and the specificity ofd-alanyl-d-alanine ligases fromPseudomonas aeruginosa, Streptococcus faecalis, andStaphylococcus aureus, using some aminophosphonic acids and related compounds.dl-I-Aminoethylphosphonic acid was shown to be a competitive inhibitor of theP. aeruginosa andS. faecalis ligases; assuming ad-form stereospecificity, its activity was nearly equal to that ofd-cycloserine. 2-Aminoethylphosphonate was found to be a weak inhibitor of the ligases, in contrast to the carboxylic analog, β-alanine. γ-Aminobutyric acid and phosphoethanolamine also exhibited some inhibitory properties.     

A new scolenaspidid (Osteostraci, Vertebrata) from the Lower Devonian of Podolia, Ukraine

Anew osteostracan genus and species,Victoraspis longicornualis n. gen., n. sp., is described based on material from Rakovets’, present day Ukraine. This new taxon shares characters with the two generaStensiopelta Denison, 1951 andZychaspis Janvier, 1985. A phylogenetic analysis supports the position ofVictoraspis as the sister group to a monophyleticStensiopelta, while the interrelationships of the various species ofZychaspis are poorly resolved. A morphometric analysis is carried out in an attempt to further resolve the taxonomic affinity. This analysis groups all examinedZychaspis species closely together, and further supports the establishment ofVictoraspis as separate genus.      

D-Amino acids in protein de novo design. II. Protein-diastereomerism versus protein-enantiomerism

Summary With a few exceptions, proteins in our biosphere are based exclusively onl-amino acids. The inversion of configuration of all the stereogenic centers in a protein leads to anall-d compound with ‘mirror image’ properties and ‘mirror image’ structure. We propose to use the termprotein-enantiomerism to describe the relationship between two proteins that have the same sequence but whose amino acids have opposite configuration. We will use the termprotein-diastereomerism to define the relationship between two proteins that have the same sequence in which some amino acids have opposite configurations. A classification of type I, II, III, and IV protein-diastereomerism is proposed. By extension, a diastereoprotein is a protein where some amino acids have the same configuration (l ord) while others have the opposite one (d orl). A particular case of diastereoproteins aremesoproteins, also analyzed in this article. In addition to the goal of making proteins resistant to protease degradation, the use ofd-amino acids in protein de novo design may give rise to proteins with structures, and perhaps properties, very different to those of nativeall-l-proteins.     

On fixed precision level sequential sampling

Summary It is proposed that the sequential sampling design ofKuno (1969) for estimating populations with a fixed level of precision be modified by using σ²=am ^b for the variance-mean relationship for most field distributions of organisms. This function yields a straight line “stop line” rather than a curve. An example is calculated and used with field data.     

Critique of ‘Australopithecus afarensis’ as a single species based on dental metrics and morphology

Leonard andHegmon (1987) compare a series of dental metrics of ‘Australopithecus afarensis Johanson, White, andCoppens, 1978’ with criteria for modern apes, to test the hypothesis that ‘A. afarensis’ represents a single species. They also compare the morphology of the lower third premolar. The dental breadth of ‘A. afarensis’ shows a wide range of variation, particularly in the lower third premolar morphology which displays greater variation than in modern apes—yet the study concludes that the single species hypothesis cannot be rejected. The study is flawed by applying criteria for pongids inappropriate for a hominid. When ‘A. afarensis’ is compared with criteria for hominids, the range of variation in dental size, breadth, and third premolar morphology is greater than that in any hominid species. The single species hypothesis is, therefore, once again rejected. Moreover, the name ‘A. afarensis’ is preoccupied byPraeanthropus africanus (Weinert) and must be dropped.     

A new notion on the heteropterofauna (Insecta: Hemiptera,Heteroptera) from the Pliocene of Willershausen (N Germany)

Mainly based on collections from Willershausen (Lower Saxony, North Germany), the Pliocene Heteroptera fauna of West Europe is briefly revised. The present compilation includes a checklist with taxonomic and systematic corrections ofJordan’s (1967, 1969) type materials. Naucoroid water bugs of the family Aphelocheiridae are distinguished and the extinct species of the genusAphelocheirus are redescribed. The new genusWillershausenia n.gen. (type species:Nabis strausi Jordan, 1969) is defined and transferred to the coreoid family Alydidae.      

Notes on the biology of a spider parasiteColpomeria kincaidii Ashmead [Hymenoptera: Ichneumonidae]

C. kincaidii, an ectoparasite ofTetragnatha laboriosa Hentz, was found most commonly in spring and fall. Peak parasitism was 18%. They appeared to oviposit only on middle instar spiderlings, and winter as larvae attached to spiders.

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Résumé C. kincaidii, un ectoparasite deTetragnatha laboriosa Hentz, a été trouvé très communément au printemps et en automne avec un taux de parasitisme maximum de 18%. Il semble pondre seulement sur les stades juvéniles moyens de l’araignée et hiverner à l’état de larves fixées aux araignées adultes.

     

A derivation of a rote learning curve from the total uncertainty of a task

The derivation of H. D. Landahl’s learning curve (1941,Bull. Math. Biophysics,3, 71–77) from a single information-theoretical assumption obtained previously (Rapoport, 1956,Bull. Math. Biophysics,18, 317–21) is extended to obtain the entire family of such curves with the number of stimuliM (to each of which one ofN responses is to be associated) as a parameter. No additional assumptions are required. The entire family thus appears as a function of a single free parameter,k, all other parameters being experimentally determined. The theory is compared with a set of experiments involving the learning of artificial languages. An alternative quasi-neurological model leading to the same equation is offered.     

<Emphasis Type="Italic">Melanopsis</Emphasis> from Al-Qarn,Jordan Valley (Gastropoda: Cerithioidea)

Fossil species ofMelanopsis from a freshwater formation in the Jordan Valley (near Al-Qarn) were investigated and the deposits containing these species are formally described as Al-Qarn Formation. Four species were found:Melanopsis buccinoidea Olivier,M. tchernovi Heller & Sivan,M. costata Olivier andM. aaronsohni Blanckenhorn.Melanopsis costata was represented by two groups, “stepped” and “non-stepped”, the latter differing in its lower figurativity index. Intermediates were found betweenM. buccinoidea andM. tchernovi; they may be hybrids. TheMelanopsis assemblage bridges the faunal gap, in the Jordan Valley, between the 2 Ma lake of ‘Erq el Ahmar on the one hand and the 0.8–1.7 Ma lake of ‘Ubeidiya on the other. This suggests an early Pleistocene age of about 1.8 million years for the Al-Qarn Formation.     

Lower Cambrian (Atdabanian/Botomian) Shallow-Marine carbonates of the Görlitz Synclinorium (Saxony/Germany)

Summary Geological, papaeontological and microfacies studies in the Lower Cambrian carbonate complex of the G?rlitz Synclinorium (eastern Germany/Saxony/Lusatian region) provide new data for the fossil content, depositional history and palaeogeography. The Lower Cambrian of the G?rlitz Synclinorium belongs to the facies zones 5, 7 and 8 ofWilson (1975)-platform rim with connections to the open ocean and to the restricted platform areas. An extraordinarily rich fauna was found with elements which are in some cases new for Europe (Rhombocorniculum cancellatum Cobbold,Fordilla sibirica Krasilova, Calodiscus lobatus Hall,Archaeooides granulatus Qian,Archiasterella pentactina Sdzuy,Allonia sp.,Obliquatheca aldanica Sysoiev,Conotheca circumflexa Missarzhevsky,Microcornus elongatus Missarzhevsky,Lenalituus sp.,Pelagiella cf.lorenzi Kobayashi,Beshtashella sp.,Comluella sp.,Cambroclavithidae gen. et sp. indet., Helcionellidae gen. et sp., indet. Eocrinoidea gen. et sp. indet.) This fauna indicates Lower Cambrian (higher Atdabanian/Botomian) age and reveals palaeobiogeographical connections to the Siberian Platform, to the Mediterranean area and to China. A somewhat new stratigraphical subdivision of the Lower Cambrian sequence (Zwetau Formation) is described. New units are established within the Ludwigsdorf Member (the carbonatic lower part of the sequence), the ‘Lower Ludwigsdorf Member’ (massive dolostone) and the ‘Upper Ludwigsdorf Member’ (bedeed limestones and their equivalents). The subsequentLusatiops Member is subdivided intoSerrodiscus Bed (claystones) andLusatiops Bed (siltstones).     

The enumeration ofStaphylococcus aureus in foods

Summary Staphylococcus aureus can be enumerated in foods by the use ofChapman’s special medium (3), under application of the drop plate technique, recommended byMiles andMisra (6). Colonies ofS.aureus so obtained can easily be macroscopically differentiated from aerobic sporeformers which grow also on this medium. The colonies can be used immediately for testing their coagulase reaction.     

The estimation of population size,migration rates and survival in a stratified population

Summary Estimates of survival, migration rates, and population size are developed for a triple catch marking experiment onn (n>-2) areas with migration among all areas and death in all areas occurring, but no recruitment (birth). This repressents the extension to three sampling times of the method ofChapman andJunge (1956) for estimates in a stratified population. The method is further extented to allow for ‘losses on capture’.     

Parasitic deuteromycetes from South Brazil

Summary This paper deals with four new fungi from the State of Rio Grande do Sul, Brazil.Phaeseptoria stenocalycis Batista, Upadhyay &Da Costa Netto, collected on leaves ofStenocalyx dasyblastus Bert. from Grammado,Phoma jasmino-macrospora Batista, Upadhyay &Da Costa Netto, collected on leaves ofJasminum flexicaule Vahl. from Pôrto Alegre,Melanconium argutidentis Batista, Upadhyay &Da Costa Netto, collected on leaves ofSebastiana argutidens Pex &K. Hoff from Grammado andCercospora caleifoleii Batista, Upadhyay &Da Costa Netto, collected on leaves ofCalea pinnatifida Banks from Pôrto Alegre are described here.Symptoms on the hosts and morphological characters of the fruitings and spores are described and illustrated.Publicação no 456 of IMUFP.     

Devenir de l’œuf et comportement de la larve dePhanerotoma flavitestacea [Hym.: Braconidae] lorsque la femelle pond dans des œufs d’Anagasta kuehniella [Lep.: Pyralidae] ayant atteint des stades de développement variés

Résumé Quand des œufs d’ages variés (1 h à 5 j) du lépidoptèreAnagasta kuehniella Zell. sont offerts aux femelles parasites dePhanerotoma flavitestacea Fisch., l’endroit où l’œuf du parasite est déposé, dépend du stade de développement de l’œuf h?te au moment de l’oviposition. Lorsque l’œuf h?te est agé de 1 h à 3 j, la ponte a lieu dans le vitellus. Par contre, si l’œuf du parasite est déposé dans un œuf agé de 4 jours ou plus, il est directement pondu dans l’embryon h?te. Selon ces résultats, il semble que la pénétration de l’œuf du parasite ou de la larve est due uniquement à un mouvement passif causé par la migration du vitellus dans le tube digestif moyen de l’embryon h?te. Ces différents points et l’effet de la piq?re de l’ovipositeur sur l’embryon h?te, la nature de l’élimination des larves surnuméraires sont discutés.

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Summary When lepidopterous eggs of varied ages (1 hour to 5 days) are offered to parasitic females ofPhanerotoma flavitestacea Fisch., the location where the parasitic egg is deposited, depends on the developmental stage of the host egg at the time of oviposition. When the host egg is 1 hour to 3 days old, the laying takes place in the yolk. On the other hand, if the parasite egg is deposited in a four day old or an older host egg, it is directly laid in the host embryo. According to these results, it seems that the penetration of the parasitic egg or larva is only a passive movement caused by the migration of the yolk into the midgut of the host embryo. These different points and the effect of the sting of the ovipositor on the host embryo, the nature of the elimination of the supernumerary larva, are discussed.

     

Studies on the genera of the familySigniphoridae [Hymenoptera: Chalcidoidea] recorded from India

An account of the Indian forms belonging to the familySigniphoridae is given. The family is represented by two genera namely,Thysanus Walker andChartocerus Motschulsky. The genusThysanus with the speciesT. ater Walker is reported for the first time from India, and is redescribed in greater detail. The subdivision of the genusChartocerus into three subgenera (Chartocerus s. str.,Xana Kurdjumov, andSigniphorina Nikol’skaja.) proposed byRosanov (1965) is accepted. In the subgenusXana two new species are described and two already known species are recorded. In the subgenusSigniphorina one new species is described. A new generic character in the subgenital plate of the genusThysanus is proposed. The generic character in the subgenital plate of the genusChartocerus described byMan Mohan (1963) is confirmed.

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Résumé La famille desSigniphoridae est représentée par deux genres:Thysanus Walker etChartocerus Motschulsky. Le genreThysanus avec l’espèceT. ater Walker est indiquée pour la première fois de l’Inde et est redécrite avec plus de détails. La subdivision du genreChartocerus en trois sous-genres (Chartocerus s. str.,Xana Kurdjumov etSigniphorina Nikol’skaja proposée parRosanov (1965) est acceptée. Dans le sous-genreXana deux nouvelles espèces (C. (X.) hyalipennis sp. n. etC. (X.) walkeri sp. n.) sont décrites et deux espèces déjà connues sont répertoriée. Parmi celles-ciC. (X.) kurdjumovi (Nikol’skaja) est mentionnée pour la première fois en Inde. Les males de l’espèceC. (X.) kerrichi sont décrits. Dans le sous-genreSigniphorina une nouvelle espèce est décrite.