R－藻红蛋白──金（AUC4）和汞（PCMS）重原子衍生物的制备和分析

在获得适合Ｘ射线衍射分析用的Ｒ－藻红蛋白单晶体的基础上,用重原子浸泡法,将晶体浸入含重金属金和汞的０．０５ｍｏｌ／Ｌ磷酸钠－硫酸铵的母液内,经对晶体衍射点强度的分析．找出有明显变化的重原子衍生物。最终得到了与Ｒ－藻红蛋白晶体同晶型的含金和汞的两种重原子衍生物。用面探测仪分别收集了这两种重原子衍生物的衍射数据。通过差值Ｐａｔｔｅｒｓｏｎ图分析,分别确定了重金属金和汞的位置,经对重原子位置参数精化后,给出的品质因子结果表明,含金和汞的重原子衍生物均可被用于多对同晶置换法求解Ｒ－藻红蛋白晶体母体相角的计算。     

两种不同红藻的R－藻红蛋白激发强度相关的皮秒（10~（－12）秒）荧光动力学研究

本文研究了分别从红藻多管藻（Ｐｏｌｙｓｉｐｈｏｎｉａｕｒｃｅｏｌａｔｅ）和条斑紫菜（Ｐｏｒｐｈｙｒａｙｅｚｏｅｎｓｉｓ）中提取的两种不同光谱类型的Ｒ－藻红蛋白Ｒ－ｐｈｙｃｏｅｒｙｔｈｒｉｎ激发强度相关的皮秒（１０－１２秒）荧光衰减动力学过程。结果发现：随激发光强增大,单重态－单重态激子湮灭发生（其衰减过程约为６０～８０皮秒）,并引起荧光量子产率下降。这两种Ｂ－藻红蛋白在相同光强激发下,表现出不同的单重态一单重态激子湮灭过程,主要因它们处于激发态的发色团数目不同所致。     

两种不同红藻的R—藻红蛋白激发强度相关的皮秒（10^…

本文研究了分别从红藻多管藻和条斑紫菜中提取的两种不同光谱类型的Ｒ－藻红蛋白Ｒ－ｐｈｙｃｏｅｒｙｔｈｒｉｎ激发强度相关的皮秒（１０＾－１２秒）荧光衰减动力学过程。结果发现：随激光强增大,单重态－单重态激子湮灭发生（其衰减过程约为６０－８０皮秒）,并引起荧光量子产率下降。这两种Ｒ－藻红蛋白在相同光强激发下,表现出不同的单重态－单重态激子湮灭过程,主要因它们处于激发态的发色团数目不同所致。     

多管藻中R－藻蓝蛋自的分离、结晶和初步晶体学研究

从青岛采集的多管藻（Ｐｏｌｙｓｉｐｈｏｎｉａｕｒｃｅｏｌａｔａ）中分离得到的Ｒ－藻蓝蛋白,在ｐＨ＝７．０的０．０５ｍｏｌ／Ｌ磷酸盐－硫酸铵缓冲液中,使用悬滴气相扩散法获得适合Ｘ光衍射分析用单晶。经Ｂｕｅｒｇｅｒ徘循照相和ＸＲＤ—１００面探测仪分析,Ｒ－藻蓝蛋白晶体属于四方晶系,空间群为Ｐ４１（３）２１２,晶胞参数：ａ＝ｂ＝１３７．５ｃ＝２１８．５α＝β＝γ＝９０°。用等比重梯度柱法测定了晶体和母液的比重分别为１．１９和１．０９。根据分子量与晶胞体积估算,一个不对称单位含有一个分子,推测它的分子聚集态形式为（αβ）３。     

多管藻中R－藻蓝蛋自的分离、结晶和初步晶体学研究

从青岛采集的多管藻（Ｐｏｌｙｓｉｐｈｏｎｉａｕｒｃｅｏｌａｔａ）中分离得到的Ｒ－藻蓝蛋白,在ｐＨ＝７．０的０．０５ｍｏｌ／Ｌ磷酸盐－硫酸铵缓冲液中,使用悬滴气相扩散法获得适合Ｘ光衍射分析用单晶。经Ｂｕｅｒｇｅｒ徘循照相和ＸＲＤ—１００面探测仪分析,Ｒ－藻蓝蛋白晶体属于四方晶系,空间群为Ｐ４１（３）２１２,晶胞参数：ａ＝ｂ＝１３７．５ｃ＝２１８．５α＝β＝γ＝９０°。用等比重梯度柱法测定了晶体和母液的比重分别为１．１９和１．０９。根据分子量与晶胞体积估算,一个不对称单位含有一个分子,推测它的分子聚集态形式为（αβ）３。     

Rhodosorus mairinus中藻红蛋白的纯化及其性质的研究

从Ｒｈｏｄｏｓｏｒｕｓ ｍａｒｉｎｕｓ中提取了藻红蛋白,通过改进纯化方法,得到了三种电泳纯的藻红蛋白：Ｂ－型藻红蛋白１,Ｂ－型藻红蛋白２和ｂ－型藻红蛋白（以下简称Ｂ－ＰＥ１,Ｂ－ＰＥ２和ｂ－ＰＥ）。分别测定这三种藻红蛋白聚合体和亚单位的分子量。测定了它们的可见光的吸收光谱和荧光光谱。两种Ｂ－ＰＥ的可见光的吸收光谱比ｂ－ＰＥ的多一个４９８ｎｍ的吸收峰,三种藻红蛋白的氨基酸组成以酸性氨基酸和疏水性氨基     

R—藻红蛋白三维结构研究

藻类的捕光系统是由棒状的藻胆体构成的,藻胆体又是由藻红蛋白、藻蓝蛋白和变藻蓝蛋白组成的。光能从藻红蛋白传递到藻蓝蛋白,再传递到变藻蓝蛋白,最后传递到光反应中心,其传递效率接近１００％。Ｒ－灌红蛋是藻红蛋白一种,它是多亚基,超大分子量的蛋白色素复合物。为了阐明光能传递的机理,我们使用Ｘ－射线晶体学的方法,对取自多管藻的Ｒ－藻红蛋白的三维结构进行了长期的研究并取得了一系列进展。首先,我们使用多对同晶转     

拟南芥VSP1硒代蛋白衍生物的制备和晶体生长

拟南芥VSPl蛋白是一种具有酸性磷酸酶活性的植物防御蛋白。为利用硒原子的反常散射获取VSPl蛋白晶体X射线衍射的相位信息,以质粒pET-22b为表达载体,大肠杆菌B834（DE3）为宿主茵,在含有硒代甲硫氨酸的M9培养基中诱导表达VSPl硒代蛋白衍生物。通过Ni-NTA亲和层析纯化的目的蛋白经SDS-PAGE检验,纯度在95％以上。通过优化VSPl母体蛋白晶体的生长条件,获得了可衍射的硒代蛋白晶体。     

几种海洋红藻中的R—藻红蛋白对胰鸟素抗体的免疫反…

本文利用点免疫结合测定法研究了条斑紫菜,红毛菜,多管藻,海萝和江蓠中两种不同分子量的Ｒ－和ｒ－藻红蛋白（ＰＥ）对胰岛素抗体的免疫反应性。这５种红藻中的Ｒ－藻红蛋白都可用蔗糖密度线性梯度超速离心法,得到分子量不同的两种Ｒ－ＰＥ。它们与胰岛素抗体都发生免疫结合反应,但用反射扫描色谱测定,在抗原量相同的比较实验中,反映它们免疫结合反应的棕色斑点的扫描峰面积有所不同。即它们与胰岛素抗体的结合率不同,其中海     

高碘酸钠和戊二醛交联法构建的R-藻红蛋白-C-藻蓝蛋白交联物能量传递效率的比较研究

从单细胞蓝藻钝顶螺旋藻中纯化C-藻蓝蛋白,从海洋红藻多管藻纯化R-藻红蛋白.分别用高碘酸钠氧化法和戊二醛法将二者共价连接为R-藻红蛋白-C-藻蓝蛋白交联物,再用Sephadex G-200柱层析纯化.光谱分析表明,用两种方法构建的共价交联物都可以将激发能从R-藻红蛋白传递到C-藻蓝蛋白.二者相比,高碘酸钠氧化法构建的共价交联物的能量传递效率更高.     

Crystallization of the gene 45 protein from the DNA replication fork of bacteriophage T4

The gene 45 protein from bacteriophage T4 has been purified and is crystallized. This protein is part of the T4 DNA replication complex. The crystallized protein is active in complementation assays. X-ray diffraction analysis is in progress; data are measured for the native and several heavy atom derivatives. The crystals diffract to about 3.5-A resolution.     

Crystallization and preliminary X-ray analysis of the catalytic domain of chitinase D from Bacillus circulans WL-12

We report here on crystallization and preliminary X-ray analysis of the catalytic domain of chitinase D from Bacillus circulans WL-12. The native crystals of this domain were found to belong to the orthorhombic space group P2(1)2(1)2(1). To elucidate the structure of the catalytic domain by the multiple isomorphous replacement method, 30 kinds of derivatized crystals were prepared by soaking the native crystals into a mother liquor containing salts of heavy metal atoms. Difference Patterson maps calculated for four derivatives showed strong peaks in the Harker sections.     

Structure of ferricytochrome c' from Rhodospirillum rubrum at 6 A resolution

The structure of a ferricytochrome c' extracted from Rhodospirillum rubrum has been determined at 6 A resolution by the X-ray crystallographic method. The crystals, obtained by dialyzing the protein solution against polyethylene glycol 4000, belong to the hexagonal space group P6(1). Two heavy atom derivatives were obtained by soaking the native crystals in K2PtCl6 and CH3HgCl solution. The phases calculated by the multiple isomorphous replacement method gave an overall figure of merit of 0.90 at 6 A resolution. The resulting electron density map showed the molecular boundary clearly, and gave molecular dimensions of 50 X 25 X 30 A for a monomer molecule. From visual examination of this map, the cytochrome c' from Rhodospirillum rubrum has a similar chain-folding pattern to the cytochrome c' from Rhodospirillum molischianum, the structure determination of which has already been carried out.     

Crystallization and main-chain structure of neutral protease from Streptomyces caespitosus

A neutral protease, i.e., a zinc-containing metalloendoprotease from Streptomyces caespitosus, has been crystallized using acetone as a precipitating agent. The crystals diffract to better than 1.5 A resolution when a rotating anode X-ray generator is used as an X-ray source. Protein phase angles were calculated by the multiple isomorphous replacement method using two heavy-atom derivatives (HgCl2 and CH3HgCl). A 6 A resolution electron density map clearly showed molecular boundaries. Although its amino acid sequence is not known, the folding pattern of the polypeptide chain could be traced on a 2.5 A resolution electron density map. A large cleft, which is located on the molecular surface, was proved to be the active site of the enzyme by structure analyses of inhibitor-complex crystals. The highest electron density peak, which corresponds to the cleft, was assigned to a catalytically essential zinc atom on difference Fourier synthesis between native and EDTA-soaked crystals.     

Rare earths as isomorphous calcium replacements for protein crystallography

Replacement of calcium in thermolysin by lanthanide ions has been found to provide a useful isomorphous derivative for the X-ray analysis of the protein. The substitution can be achieved simply by diffusion of the heavy metal ions into the native protein crystals and, as measured by crystallographic residuals, causes little disruption of the native conformation. This disruption is noticeably less when the radius of the lanthanide ion is less than that of calcium. The results suggest that lanthanide substitution may be a generally applicable method of obtaining isomorphous heavy atom derivatives of calcium binding proteins.     

The structure determination of rabbit phosphoglucomutase

Tetragonal crystals of rabbit phosphoglucomutase have been grown from solutions containing ammonium sulphate, polyethylene glycol solution and enzyme. There are two molecules, each of relative molecular mass 64 000 per asymmetric unit. A rotation function suggests that these are related by a twofold axis. X-ray diffraction data for five heavy-atom derivatives and native crystals have been collected by using oscillation photography. A tentative and partial solution of the KAu(CN)2 sites has been obtained. The enzyme in the native crystals is phosphorylated, but the phosphate can be removed without harm to the crystals. Similarly the essential Mg2+ ion can be removed or replaced by Zn2+. The enzyme is active in the native crystals.     

Molecular Shape and Packing in Crystals of Soybean β-Amylase

The structure of soybean β-amylase in trigonal (P3₂21) crystals was determined at 4.5 Å resolution by X-ray crystallographic techniques using the isomorphous replacement method. X-Ray diffraction data were collected by the screened precession method for the native enzyme and two heavy atom derivatives. The shape of the enzyme molecule and the locations of mercurial binding are presented. The molecule appeared to be composed of two domains: the larger domain contains one mercurial site on its surface and the smaller domain has another mercurial site, which seemed to be the so-called essential sulfhydryl group. A distinct cleft formed between the domains near the latter sulfhydryl group may be a substrate binding region.     

Production and crystallization of a selenomethionyl variant of UmuD′, an Echerichia coli SOS response protein

Crystals of both native and mutant Escherichia coli UmuD′ protein were obtained using the hanging drop method. Soaking the native crystals in solutions of heavy metal ions failed to produce good isomorphous derivatives, and selenomethionine substituted wild-type protein did not crystallize under conditions that gave native crystals. Site-directed mutagenesis was used to change the penultimate residue, a methionine amino acid, to either a valine or a threonine amino acid. Crystals were subsequently obtained from these mutant proteins with and without selenomethionine Incorporation. Crystals of the native, the mutant, and the selenomethionine Incorporated protein were all similar, crystallizing in the P4₁2₁2 space group. © 1996 Wiley-Liss, Inc.     

Preliminary crystallographic studies on human apo-lactoferrin in its native and deglycosylated forms

Human apo-lactoferrin in both native and deglycosylated forms has been purified, and crystals obtained by dialysis against low ionic strength buffer solutions. The crystals of native apo-lactoferrin are orthorhombic, space group P2(1)2(1)2(1) with cell dimensions a = 222.0 A, b = 115.6 A, c = 77.8 A and have two protein molecules per asymmetric unit. Two crystal forms of deglycosylated apo-lactoferrin have been obtained. One is orthorhombic, space group P2(1)2(1)2(1), with cell dimensions a = 152.1 A, b = 94.6 A, c = 55.8 A. The second is tetragonal, space group I4, with cell dimensions a = b = 189.4 A, c = 55.1 A. Both of the latter have only one molecule per asymmetric unit, and are suitable for high-resolution X-ray structure analysis.