Clonal diversity,clonal persistence and rapid taxon replacement in natural populations of species and hybrids of the Daphnia longispina complex

Hybridization is common among cyclical parthenogens, especially in zooplankton species assemblages of the genus Daphnia. To explore hybridization dynamics and the extent of clonal diversity in the Daphnia longispina complex, we analysed population structure in eight permanent lakes. Based on 15 microsatellite loci, three major taxonomic units emerged: two species, D. galeata and D. longispina and their F1 hybrids, supported by factorial correspondence analysis and two Bayesian methods. At the same time, the detection of backcross classes differed between methods. Mean clonal diversity was lowest in the F1 hybrids, as expected from the high rate of asexual reproduction. Within taxa, replicated genotypes were of clonal origin, but clonal lineages persisted in subsequent years in only one of three resampled lakes. In another lake, the taxon composition changed from being dominated by hybrids to complete dominance by one parental taxon. Such a year‐to‐year taxon replacement has not been reported for the D. longispina complex before. Our data on this hybrid complex illustrate that high‐resolution genotyping is essential for the understanding of ecological and evolutionary outcomes of hybridization in partially clonal taxa.     

Identifying century-old long-spined <Emphasis Type="Italic">Daphnia</Emphasis>: species replacement in a mountain lake characterised by paleogenetic methods

Mountain lakes often harbour morphologically or genetically unique populations of zooplankton species, including cladocerans. Daphnia lacustris Sars, predominantly found in Fennoscandia but also known from two Central European lakes in the Tatra Mountains, is one of such taxa. This Daphnia species often forms morphotypes with extremely long tailspines. Historical literature from a century ago documented similar morphs from another lake in the Tatra mountain range, presently inhabited by the phenotypically very different D. galeata. Using a paleogenetic approach (partial sequencing of the mitochondrial gene for 12S rRNA from preserved ephippial eggs in the lake sediment), we tested the hypothesis that Daphnia species composition changed in the lake due to anthropogenic disturbances, and that long-spined morphs were actually another relict population of currently extinct D. lacustris. Ephippia with extremely long spines were successfully retrieved from sediment cores. Despite being morphologically very well preserved, intact eggs were found in less than 2% of analysed ephippia. Genetic analyses, benefiting in most cases from amplification of short 12S fragments using internal primers, proved that long-spined ephippia belonged to D. longispina, which apparently coexisted with D. galeata in the mid-twentieth century. Our results confirm that paleogenetic methods are useful for studying the recent population structures of zooplankton species forming dormant egg banks but lacking reliably identifiable remains in sediments, and show that the extreme development of tailspines in mountain-lake Daphnia is associated with as-yet unclear environmental factors rather than taxonomic status.     

Phylogeography of two cryptic species of African desert jerboas (Dipodidae: Jaculus)

The lesser Egyptian jerboa Jaculus jaculus is a desert dwelling rodent that inhabits a broad Arabian–Saharan arid zone. Recently, two distant sympatric lineages were described in North‐West Africa, based on morphometric and molecular data, which may correspond to two cryptic species. In the current study, phylogenetic relationships and phylogeographical structure among those lineages and geographical populations from North Africa and the Middle East were investigated. The phylogeographical patterns and genetic diversity of the cytochrome b gene (1110 bp) were addressed on 111 jerboas from 41 localities. We found that the variation in Africa is partitioned into two divergent mitochondrial clades (10.5% divergence relating to 1.65–4.92 Mya) that corresponds to the two cryptic species: J. jaculus and J. deserti. Diversifications within those cryptic species/clades were dated to 0.23–1.13 Mya, suggesting that the Middle Pleistocene climatic change and its environmental consequences affected the evolutionary history of African jerboas. The third distant clade detected, found in the Middle East region, most likely represents a distinct evolutionary unit, independent of the two African lineages. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ??, ??–??.     

Species distribution modeling and machine learning in assessing the potential distribution of freshwater zooplankton in Northern Italy

Species distribution models (SDM's) are powerful tools used to describe species suitable habitats and spatial occurrences and many statistical methods and algorithms are available to model the spatial distribution of a target species. Here we explore a species distribution model framework combined with machine learning algorithms to describe the distribution of two freshwater zooplankton species Daphnia longispina (Cladocera) and Eucyclops serrulatus (Copepods) in a system of 283 shallow and ephemeral freshwater habitats in the Northern Italian Appennines. For each species, we model the habitat suitability by comparing one regression-based model, one generalized linear model (GLM) and two machine learning algorithms: random forest (RF) and artificial neural network (ANN) with one hidden layer. We used a total of 27 predictor variables. The modeling framework was used considering a scenario of future climate change in order to evaluate potential shifts in spatial distribution of the zooplankton species. For both species, the supervised machine learning algorthn (ANN) produced the highest mean values for all the performance metrics. For D. longispina and E. serrulatus, the two most important variables ranked by the shap analysis and global sensitivity and uncertainty analysis (GSUA) were temperature seasonality and precipitation of the warmest quarter. Both species, in a future climatic change scenario, are expected to shift their distribution mainly toward lower northern altitudes with an overall expansion of 7% with respect to the past/present climatic conditions. However, the spatial expansion of D. longispina and E. serrulatus was qualitatively different. In agricultural and natural areas, the expansion of E. serrulatus was greater than that of D. longispina but, in natural areas, the expansion of E. serrulatus was counterbalanced by a greater spatial contraction than that of D. longispina. As hypothesized, direct and indirect anthropogenic pressures may affect the predicted potential shift and expansion of the zooplankton species.     

The zooplankton-phytoplankton interface in lakes of contrasting trophic status: an experimental comparison

We report here the results of an experimental study designed to compare algal responses to short-term manipulations of zooplankton in three California lakes which encompass a broad range of productivity (ultra-oligotrophic Lake Tahoe, mesotrophic Castle Lake, and strongly eutrophic Clear Lake). To assess the potential strength of grazing in each lake, we evaluated algal responses to a 16-fold range of zooplankton biomass. To better compare algal responses among lakes, we determined algal responses to grazing by a common grazer (Daphnia sp.) over a range ofDaphnia densities from 1 to 16 animals per liter. Effects of both ambient grazers andDaphnia were strong in Castle Lake. However, neither ambient zooplankton norDaphnia had much impact on phytoplankton in Clear Lake. In Lake Tahoe, no grazing impacts could be demonstrated for the ambient zooplankton butDaphnia grazing had dramatic effects. These results indicate weak coupling between phytoplankton and zooplankton in Clear Lake and Lake Tahoe, two lakes which lie near opposite extremes of lake trophic status for most lakes. These observations, along with work reported by other researchers, suggest that linkages between zooplankton and phytoplankton may be weak in lakes with either extremely low or high productivity. Biomanipulation approaches to recover hypereutrophic lakes which aim only to alter zooplankton size structure may be less effective if algal communities are dominated by large, inedible phytoplankton taxa.     

Genetic diversity and gene flow within and between two different habitats of Primula merrilliana (Primulaceae), an endangered distylous forest herb in eastern China

Understanding whether and how different habitats shape population genetics is a fundamental question and a specific goal for evolutionary and conservation biology research. This study examined genetic diversity and gene flow within and between mountain and foothill habitats of Primula merrilliana, an endangered distylous forest herb in eastern China. Eleven population characteristics, including area, size and density variation, from the two habitats were also investigated. Mountain populations had significantly higher mean genetic diversity than foothill populations, which may be explained by stronger self‐incompatibility breeding system, more opportunity to use elevational shifts to track suitable sites under conditions of climate change and more heterogeneous environments in the former habitat, rather than by the differences of population size, gene flow and genetic drift intensity between them. Genetic analysis revealed that two distinct lineages, corresponding to the two habitats, diverged at China's ‘Last Glaciation’ (11 700–67 500 yr BP), suggesting this divergence was probably triggered by warmer climates during inter‐ (or post‐) glacial periods. Low unidirectional gene flow from mountain to foothill habitats, chiefly by seed dispersal, played a more important role in overall gene flow between habitats than within‐habitat gene flow. Within habitats, pollen contributes more substantially to gene flow than seed dispersal, especially in foothill habitats, possibly due to higher individual density and larger population sizes. These results have implications for the conservation in this and similar landscape areas and indicate the need to protect suitable habitats with wide elevational spans and sufficient size to permit ecological and elevational shifts in response to climatic changes. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 179 , 172–189.     

A description of pelagic zooplankton in the large lakes of the Todzha Depression (Bolshoi Yenisey River basin, Tuva)

The zooplankton structure of large lakes (Noyon-Khol’, Shuram-Khol’, Borzu-Khol’, Many-Khol’, Kadysh, and Todzha) of the Todzha Depression has been studied. A comparison of the species composition, abundance, and biomass of zooplankton in the lakes was made. Rotifers have the largest species diversity: from 10 to 16 species, with Conochilus sp., Collotheca sp., Kellicottia longispina (Kellicott), and Asplanchna priodonta Gosse being the most abundant. Copepods are represented mostly by Arctodiaptomus paulseni (Sars), Eudiaptomus graciloides (Lilljeborg), Cyclops scutifer Sars, and Mesocyclops leuckarti Claus. Daphnia galeata Sars and Bosmina longispina Leydig are the dominant cladoceran species. It is shown that the zooplankton communities of the lakes in the Todzha Depression are characterized by a high degree of species composition similarity. Factors forming the taxonomic structure of pelagic zooplankton in the system of these lakes are displayed.     

Zooplankton of lakes in the spurs of the Putorana Plateau and adjacent territories (North of Krasnoyarsk Krai)

Species composition and parameters of biomass of net plankton were analyzed for four large and 35 small lakes from 10 areas located between 69.5° and 67.5°N and 87° and 92°E that were examined in July–August, 2001 and 2003–2004. In the composition of the first (dominant) and/or second (subdominant) species in the ranged row of the average biomass, the lakes were copepod in 78.8% of cases, in 67.3%, calanoid. The share of biomass of cladocerans in the total biomass of zooplankton exceeded 50% only in 31% of cases. By the frequency of occurrence as dominant or subdominant by biomass the first place is occupied by copepodites calanoid (34.6% of cases), the second, by sexually mature Heterocope appendiculata (26.9%), the third, by copepodites cyclopoid (17.3%), the fourth, by Polyphemus pediculus (15.4%), the fifth, by Acanthodiaptomus denticornis (13.5%), the sixth, by Bosmina cf. longispina (11.5%), the seventh, by Heterocope borealis (9.6%), the eighth, by Daphnia cf. longispina (7.7% of cases). For the first time in the region 14 species of crustacean zooplankton are given. The known range of some species and subspecies (for example, Chydorus biovatus, Camptocercus fennicus, Ophyoxus gracilis kolymensis, Arctodiaptomus acutilobatus, Acanthrodiaptomus tibetanus) is widened owing to the findings in the studied region. The groups of the areas are more similar in terms of zooplankton north to south than east to west; the number of the cladoceran species and the number of cladoceran lakes grew north to south and east to west, which corresponded to the general change of climate towards more mild north to south for similar altitudes and east to west for different altitudes from mountain areas to the low lands. The comparison of the species lists from different northern regions showed that the species diversity (total number of species) of cladocerans and copepods does not change significantly west to east. Distribution of species and changes in the zooplankton structure are discussed from the point of view of possible influence of the global warming.     

Zooplankton Seasonal Abundance of South AmericanSaline Shallow Lakes

The central provinces of Argentina are characterized by the presence of a high number of shallow lakes, located in endorheic basins, many of which have elevated salinities as well as eutrophic or hypereutrophic condition. The zooplankton of four saline shallow lakes of the province of La Pampa was studied on a monthly basis during a 2‐year period to determine its temporal and spatial variation. The surface of these shallow lakes (<2.5 m depth) varied between 56.8 and 215.9 ha, and some have from 8.4 to 20.8 g · l^–1. The more saline lakes have “clear” water and the less saline lakes “turbid” water. Fishes, Jenynsia multidentata , were present in only two lakes during the last two months of the studied period. The zooplankton was composed of 17 taxa of Rotifera, 5 taxa of Cladocera and 4 taxa of Copepoda. The low diversity and the faunistic composition are characteristic of saline environments. Although the studied lakes share 38% of the species, the faunistic similarity was higher between the two least saline lakes. The lowest diversity was found in the two most saline lakes. All four shallow lakes were characterized by their very high zooplankton density, especially in the least saline lakes (<80000 ind · l^–1). The abundance is significantly correlated with the water transparency but not with salinity. The zooplankton temporal variation was characterized by the alternation of macro‐ and microzooplankton, probably regulated by competition and intrazooplanktonic predation. In each lake, the spatial abundance distribution of the macro‐ and microzooplankton was homogeneous. It was related to the shallow depht of the lakes and their polymictic condition. The Scheffer model on alternative states in shallow lakes acknowledges that it cannot be applied to saline lakes because Daphnia , the main responsible for the clear water state, is not tolerant to high salinity. Our study shows that the most saline lakes, where the halophylic Daphnia menucoensis is abundant, have also the most clear waters. Another difference that we found with regards to the mentioned model is that, in turbid lakes, it could not have had a top‐down control on macrozooplankton exerted by fishes because in these lakes fishes were practically absent. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Daphnia diversity on the Tibetan Plateau measured by DNA taxonomy

Daphnia on the Tibetan Plateau has been little studied, and information on species diversity and biogeography is lacking. Here, we conducted a 4‐year survey using the barcoding fragment of the mitochondrial COI gene to determine the distribution and diversity of Daphnia species found across the Plateau. Our results show that species richness is higher than previously thought, with total described and provisional species number doubling from 5 to 10. Six of the taxonomic units recovered by DNA taxonomy agreed well with morphology, but DNA barcoding distinguished three clades each for the D. longispina (D. galeata, D. dentifera, and D. longispina) and D. pulex (D. pulex, D. cf. tenebrosa, and D. pulicaria) complexes. The sequence divergence between congeneric species varied within a large range, from 9.25% to 30.71%. The endemic D. tibetana was the most common and widespread species, occurring in 12 hyposaline to mesosaline lakes. The lineage of D. longispina is the first confirmed occurrence in west Tibet.     

Phylogeographic analyses reveal distinct lineages of the liverworts Metzgeria furcata (L.) Dumort. and Metzgeria conjugata Lindb. (Metzgeriaceae) in Europe and North America

Seed plant genera often exhibit intercontinental disjunctions where different species are found on different continents. Many morphologically circumscribed bryophyte species exhibit similar disjunctions. We used nucleotide sequences from the plastid and nuclear genomes to test hypotheses of phylogeography within representatives of the genus Metzgeria: Metzgeria furcata, Metzgeria conjugata, and Metzgeria myriopoda. The first two species have sexual and asexual populations, exhibit disjunctions between North America and Europe, and have been split into separate species, numerous subspecies or varieties. The third species occurs in eastern North America but is not reported from Europe. Phylogenetic analyses resolved three distinct lineages within the morphologically defined species, M. furcata: one in North America, and two in Europe. Similarly, three morphologically cryptic clades of M. conjugata were resolved by the molecular data: northern North America, Europe, and south‐eastern North America. For both species, molecular divergence among taxa occurred in the absence of morphological change. In the case of M. myriopoda, all plants from eastern North America were both morphologically uniform and genetically homogeneous (although not identical). The present study provides significant insight into a plant group with complex taxonomy, and indicates that these liverwort taxa with wide distributions, extreme sex ratios, and continental disjunctions harbor cryptic lineages. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 745–756.     

Structure and dynamics of zooplankton communities in the littoral zone of some North Carolina lakes

Species composition and seasonal, dynamics of zooplankton in the littoral zone were studied in three piedmont North Carolina lakes for one year. Nygaard's compound index indicated oligotrophic conditions in Belews Lake and eutrophic conditions in Salem Lake and Lake 150. A total of 32 species of zooplankton were found in the samples. Significantly fewer species of truely littoral zooplankton were present in the oligotrophic lake regardless of season (P < 0.05). Eutrophication appears to favor increased diversity in zooplankton of the littoral zone. Habitat heterogeneity, provided by a well developed littoral zone containing aquatic macrophytes, may be the major factor contributing to the maintenance of more taxa of zooplankton in eutrophic systems.Distinct taxa of Cladocera and Copepoda are present in the littoral zone, exhibiting seasonal dynamics that are largely different from the limnetic fauna. Such dynamics may result from predation by characteristically limnetic species of cyclopoid copepods which seek prey in the littoral zone. The numerical and seasonal abundance of predators and prey are inversely related and the true littoral taxa, represented in the present study by the genera Alona, Chydorus, Pleuroxus, Sida, Simocephalus, and Eucyclops, contained no predaceous species. The seasonal dynamics of these genera are very similar even in widely separated geographical regions, indicating that the factor(s) responsible operate independently of climatic and chemical variables. Intrazooplankton predation appears to be a more plausable explanation than segregation along depth which, although consistent with data from studies of limnetic waters, cannot be related to populations of zooplankton in shallow littoral areas.     

Stoichiometry in an ecological context: testing for links between <Emphasis Type="Italic">Daphnia</Emphasis> P-content,growth rate and habitat preference

We used laboratory experiments with ten Daphnia taxa to test for links between Daphnia P-content, growth rate and habitat preference. The taxa represent a wide range of body sizes and most show distinct preferences for one of three habitats: shallow lakes, deep, stratified lakes or fishless ponds. Previous studies show that taxa from shallow lakes and fishless ponds experience high predation risk and rich food resources, whereas taxa from deep lakes experience low predation risk, strong food limitation and potentially P-deficient resources. Thus, we predicted higher P-content and higher maximal growth rates in taxa from ponds and shallow lakes and lower P-content, lower maximal growth but reduced sensitivity to P-limitation in taxa preferring stratified lakes. In each of 25 experiments, a clonal Daphnia cohort was cultured for 4 days on a P-sufficient (molar C:P ratio 70) or a P-deficient (C:P 1,000) diet of a green alga at a high concentration (1 mg C l^–1). The P-content of adult Daphnia fed the P-sufficient diet ranged from 1.52 to 1.22% mass. Small-bodied taxa from shallow lakes had higher P-content than larger-bodied taxa from deep lakes or fishless ponds. However, we found a nonsignificant negative correlation between P-content and growth on the P-sufficient diet, rather than the positive relationship predicted by the growth rate hypothesis. The P-deficient diet resulted in declines in both growth rate and P-content compared with the P-sufficient controls and the extent of the declines differed between taxa. Taxa from ponds showed a marginally greater decline in growth with the P-deficient diet compared with taxa from shallow or deep lakes. However, contrary to stoichiometric theory, no relationship was found between a species P-content and growth depression on the P-deficient diet. Although we found evidence for habitat adaptations, our results show that factors other than Daphnia P-content are important in determining differences between Daphnia species in both maximal growth rate and sensitivity to P-limited growth.     

At the edge and on the top: molecular identification and ecology of Daphnia dentifera and D. longispina in high-altitude Asian lakes

The occurrence of members of the highly diverse Daphnia longispina complex in Southern and Central Asian high-mountain lakes has been recognized for more than a century. Until now, however, no molecular data have been available for these populations inhabiting the “Roof of the World.” Here, we present the first identification for D. gr. longispina from that region based on a molecular phylogeny. Our findings show that alpine lakes in the Pamir and Himalaya mountains host populations of widespread species of the complex, for which these are the highest known localities. A spineless morph from the Himalaya region, previously labeled as D. longispina var. aspina, was clustering tightly with D. dentifera, while a population from the Pamir mountain range was grouped with D. longispina. In addition, we analyzed ecological data available for lakes in the Khumbu region (Himalaya) to investigate ecological preferences of non-pigmented D. gr. longispina. The identified factors can at least partly be related to avoidance of high UV conditions by this species. We conclude that the widespread species D. dentifera and D. longispina also colonized the Asian high-mountain lakes, and identify the need for further research to trace the possible effect of rapid environmental changes in this region on the diversity and ecology of high-altitude Daphnia populations.     

Hidden diversity of Euscorpius (Scorpiones: Euscorpiidae) in Greece revealed by multilocus species‐delimitation approaches

Phylogenetic analysis of the genus Euscorpius (Scorpiones: Euscorpiidae) across the Mediterranean region (86 specimens, 77 localities, four DNA markers: 16S rDNA, COI, COII, and ITS1), focusing on Greek fauna, revealed high variation, deep clade divergences, many cryptic lineages, paraphyly at subgenus level, and sympatry of several new and formerly known lineages. Numerous specimens from mainland and insular Greece, undoubtedly the least studied region of the genus' distribution, have been included. The reconstructed phylogeny covers representative taxa and populations across the entire genus of Euscorpius. The deepest clades detected within Euscorpius correspond (partially) to its current subgeneric division, outlining subgenera Tetratrichobothrius and Alpiscorpius. The rest of the genus falls into several clades, including subgenus Polytrichobothrius and a paraphyletic subgenus Euscorpius s.s. Several cryptic lineages are recovered, especially on the islands. The inadequacy of the morphological characters used in the taxonomy of the genus to delineate species is discussed. Finally, the time frame of differentiation of Euscorpius in the study region is estimated and the distributional patterns of the lineages are contrasted with those of other highly diversified invertebrate genera occurring in the study region. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 110 , 728–748.     

Evidence that fish structure the zooplankton communities of turbid lakes and reservoirs

1. Visually foraging fish typically exclude large zooplankton from clear‐water lakes and reservoirs. Do fish have the same effect in turbid waters, or does turbidity provide a refuge from visual predation? 2. To test the hypothesis that fish exclude large zooplankton species from turbid sites, I searched for populations of medium or large Daphnia species in turbid, fish‐containing reservoirs of south‐central Oklahoma and north‐central Texas, U.S.A., and surveyed the literature for accounts of Daphnia species in turbid habitats worldwide. 3. Only small Daphnia species and the exuberantly spined Daphnia lumholtzi were detected in the turbid reservoirs. The Daphnia species in the reservoirs are smaller than other Daphnia species that occur in the area but were not detected. An extensive survey of the literature suggests that large Daphnia may be found in the lakes of extreme turbidity [Secchi disk depth (SD) < 0.2 m] but that only small and spiny Daphnia are likely to occur in more typical turbid locations (1.0 m > SD > 0.2 m) unless some additional factor reduces the influence of fish predation in such sites. 4. The field samples from Texas and Oklahoma together with the literature review suggest that the effect of visually foraging planktivorous fish on the size structure of turbid‐water zooplankton communities may often be as strong or even stronger than the effect of fish on clear‐water zooplankton communities.     

Salicornia L. (Amaranthaceae) in South Africa and Namibia: rapid spread and ecological diversification of cryptic species

In Salicornia, morphology does not provide reliable diagnostic characters supporting the true extent of evolutionary divergence in the genus, and species concepts have been challenged by molecular analyses. Here, we report the results of an analysis of 91 accessions of the S. meyeriana complex from South Africa and Namibia using the measurements of 38 morphological traits and external transcribed spacer (ETS) sequence data. Morphological data were analysed using discriminant analysis, principal coordinate analysis and nonmetric multidimensional scaling. Phylogenetic divergence was compared with the geographical and ecological diversity of the sampled populations. Tree topology corresponds to geography and ecology, but not to morphology. Most clades have distinct distribution areas and ecological profiles related to tidal, supratidal or inland saline habitats. Salicornia probably diversified in habitats that have experienced regular fragmentation by marine transgression/regression cycles during the Pleistocene. We suggest that this radiation produced young, but genetically, geographically and ecologically well‐defined lineages. The lack of morphological signal reveals the existence of cryptic species in Salicornia and demonstrates the necessity of using molecular data to define taxa in this genus. We propose the recognition of two subspecies in the S. meyeriana complex: S. meyeriana subsp. meyeriana and S. meyeriana subsp. knysnaensis. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 172 , 175–186.     

Extensive diversification of pebblesnails (Lithoglyphidae: Fluminicola) in the upper Sacramento River basin, northwestern USA

Mitochondrial DNA sequences from the cytochrome c oxidase subunit I (COI) and cytochrome b (cytb) genes were obtained from the nine extant, previously described species of the northwestern North American freshwater gastropod genus Fluminicola (commonly known as pebblesnails) and from a large number of taxonomically undescribed populations of these animals from the upper Sacramento River basin, California and Oregon, which is composed of the Sacramento River headwaters, and the McCloud and Pit Rivers. Phylogenetic analyses of separate and combined molecular datasets yielded well‐supported and largely congruent trees delineating 13 genetically divergent and morphologically distinctive upper Sacramento basin lineages, which we describe as new species. These include two groups of closely related and geographically proximal species that are further united by unique radular or shell features. Most of these novelties have narrow geographical distributions and are restricted to headspring areas, whereas several are more wide ranging and typically occupy larger, well‐integrated habitats. The highly endemic fauna of upper Sacramento River pebblesnails is not a single species flock, but instead a polyphyletic assemblage spread among four separate clades. Our phylogeny, together with the application of a COI molecular clock for Fluminicola, suggests that upper Sacramento River clades originated as a result of late Neogene separation of this basin from neighbouring regions (northwestern Great Basin, Klamath River basin), which is consistent with previous biogeographical hypotheses based on the distributions of fishes. The upper Sacramento River pebblesnails evolved in association with the complex late Cenozoic history of regional landscape and drainage and diversification was also facilitated by the invasion of and adaptation to insular spring habitats. Our findings are consistent with the generally limited dispersal ability and geologically ancient (mid‐Tertiary) age of this genus and imply that other portions of northwestern North America may also harbour a large number of undescribed pebblesnail species. Journal compilation © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society, 2007, 149 , 371–422. No claim to original US government works.     

High Cryptic Diversity across the Global Range of the Migratory Planktonic Copepods Pleuromamma piseki and P. gracilis

Although holoplankton are ocean drifters and exhibit high dispersal potential, a number of studies on single species are finding highly divergent genetic clades. These cryptic species complexes are important to discover and describe, as identification of common marine species is fundamental to understanding ecosystem dynamics. Here we investigate the global diversity within Pleuromamma piseki and P. gracilis, two dominant members of the migratory zooplankton assemblage in subtropical and tropical waters worldwide. Using DNA sequence data from the mitochondrial gene cytochrome c oxidase subunit II (mtCOII) from 522 specimens collected across the Pacific, Atlantic and Indian Oceans, we discover twelve well-resolved genetically distinct clades in this species complex (Bayesian posterior probabilities >0.7; 6.3–17% genetic divergence between clades). The morphologically described species P. piseki and P. gracilis did not form monophyletic groups, rather they were distributed throughout the phylogeny and sometimes co-occurred within well-resolved clades: this result suggests that morphological characters currently used for taxonomic identification of P. gracilis and P. piseki may be inaccurate as indicators of species’ boundaries. Cryptic clades within the species complex ranged from being common to rare, and from cosmopolitan to highly restricted in distribution across the global ocean. These novel lineages appear to be ecologically divergent, with distinct biogeographic distributions across varied pelagic habitats. We hypothesize that these mtDNA lineages are distinct species and suggest that resolving their systematic status is important, given the ecological significance of the genus Pleuromamma in subtropical-tropical waters worldwide.     

The noncosmopolitanism paradigm of freshwater zooplankton: insights from the global phylogeography of the predatory cladoceran Polyphemus pediculus (Linnaeus, 1761) (Crustacea,Onychopoda)

A major question in our understanding of eukaryotic biodiversity is whether small bodied taxa have cosmopolitan distributions or consist of geographically localized cryptic taxa. Here, we explore the global phylogeography of the freshwater cladoceran Polyphemus pediculus (Linnaeus, 1761) (Crustacea, Onychopoda) using two mitochondrial genes, cytochrome c oxidase subunit I and 16s ribosomal RNA, and one nuclear marker, 18s ribosomal RNA. The results of neighbour‐joining and Bayesian phylogenetic analyses reveal an exceptionally pronounced genetic structure at both inter‐ and intra‐continental scales. The presence of well‐supported, deeply divergent phylogroups across the Holarctic suggests that P. pediculus represents an assemblage of at least nine, largely allopatric cryptic species. Interestingly, all phylogenetic analyses support the reciprocal paraphyly of Nearctic and Palaearctic clades. Bayesian inference of ancestral distributions suggests that P. pediculus originated in North America or East Asia and that European lineages of Polyphemus were established by subsequent intercontinental dispersal events from North America. Japan and the Russian Far East harbour exceptionally high levels of genetic diversity at both regional and local scales. In contrast, little genetic subdivision is apparent across the formerly glaciated regions of Europe and North America, areas that historical demographic analyses suggest that were recolonized just 5500–24 000 years ago.