Carbon partitioning in Arabidopsis thaliana is a dynamic process controlled by the plants metabolic status and its circadian clock

Plant growth involves the coordinated distribution of carbon resources both towards structural components and towards storage compounds that assure a steady carbon supply over the complete diurnal cycle. We used ¹⁴CO₂ labelling to track assimilated carbon in both source and sink tissues. Source tissues exhibit large variations in carbon allocation throughout the light period. The most prominent change was detected in partitioning towards starch, being low in the morning and more than double later in the day. Export into sink tissues showed reciprocal changes. Fewer and smaller changes in carbon allocation occurred in sink tissues where, in most respects, carbon was partitioned similarly, whether the sink leaf assimilated it through photosynthesis or imported it from source leaves. Mutants deficient in the production or remobilization of leaf starch exhibited major alterations in carbon allocation. Low‐starch mutants that suffer from carbon starvation at night allocated much more carbon into neutral sugars and had higher rates of export than the wild type, partly because of the reduced allocation into starch, but also because of reduced allocation into structural components. Moreover, mutants deficient in the plant's circadian system showed considerable changes in their carbon partitioning pattern suggesting control by the circadian clock.     

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

Cassava is an important staple crop in sub‐Saharan Africa, due to its high productivity even on nutrient poor soils. The metabolic characteristics underlying this high productivity are poorly understood including the mode of photosynthesis, reasons for the high rate of photosynthesis, the extent of source/sink limitation, the impact of environment, and the extent of variation between cultivars. Six commercial African cassava cultivars were grown in a greenhouse in Erlangen, Germany, and in the field in Ibadan, Nigeria. Source leaves, sink leaves, stems and storage roots were harvested during storage root bulking and analyzed for sugars, organic acids, amino acids, phosphorylated intermediates, minerals, starch, protein, activities of enzymes in central metabolism and yield traits. High ratios of RuBisCO:phosphoenolpyruvate carboxylase activity support a C₃ mode of photosynthesis. The high rate of photosynthesis is likely to be attributed to high activities of enzymes in the Calvin–Benson cycle and pathways for sucrose and starch synthesis. Nevertheless, source limitation is indicated because root yield traits correlated with metabolic traits in leaves rather than in the stem or storage roots. This situation was especially so in greenhouse‐grown plants, where irradiance will have been low. In the field, plants produced more storage roots. This was associated with higher AGPase activity and lower sucrose in the roots, indicating that feedforward loops enhanced sink capacity in the high light and low nitrogen environment in the field. Overall, these results indicated that carbon assimilation rate, the K battery, root starch synthesis, trehalose, and chlorogenic acid accumulation are potential target traits for genetic improvement.     

A reliable and efficient method for total rna isolation from various members of spurge family (Euphorbiaceae)

Introduction – It is prerequisite and crucial to extract RNA with high quality and integrity in order to carry out molecular biology studies in any plant species of a family. Euphorbiaceae members are known for high levels of their waxes, oils with polysaccharides, polyphenolics and secondary metabolites. These conditions are recognised to interfere unfavourably with various methodologies of RNA isolation. Objective – To develop a simple, rapid and reproducible cetyltrimethylamonium bromide (CTAB)‐based protocol, to reduce the time and cost of extraction without reducing quality and yield of RNA extracted from various recalcitrant Euphorbiaceae member plant tissues such as from tree leaves (Hevea brasilensis), woody shrubs leaves (Ricinus communis, Jatropha curcas, Manihot esculenta) and storage root tissue (M. esculenta). Methodology – Simple modifications and fast steps were introduced to the original CTAB protocol. All centrifugation steps were carried out at 4°C at 12000 rpm for 10 min, the sample weight was decreased and usage of spermidine and LiCl was omitted, reducing incubation time prior to RNA precipitation. This rapid CTAB protocol was compared with various RNA isolation methods intended for use with plants rich in polysaccharides and secondary metabolites. Results – The procedure can be completed within 2 h and many samples can be processed at the same time. RNA of high quality could be isolated from all the tissues of species that we tried. The isolated RNA from different species served as a robust template for RT‐PCR analysis. Conclusion – The study has shown that the improvement of a CTAB‐based protocol allows the rapid isolation of high‐quality RNA from various recalcitrant Euphorbiaceae members. Copyright © 2010 John Wiley & Sons, Ltd.     

The legwd mutant uncovers the role of starch phosphorylation in pollen development and germination in tomato

Starches extracted from most plant species are phosphorylated. α-Glucan water dikinase (GWD) is a key enzyme that controls the phosphate content of starch. In the absence of its activity starch degradation is impaired, leading to a starch excess phenotype in Arabidopsis and in potato leaves, and to reduced cold sweetening in potato tubers. Here, we characterized a transposon insertion ( legwd::Ds ) in the tomato GWD ( LeGWD ) gene that caused male gametophytic lethality. The mutant pollen had a starch excess phenotype that was associated with a reduction in pollen germination. SEM and TEM analyses indicated mild shrinking of the pollen grains and the accumulation of large starch granules inside the plastids. The level of soluble sugars was reduced by 1.8-fold in mutant pollen grains. Overall, the transmission of the mutant allele was only 0.4% in the male, whereas it was normal in the female. Additional mutant alleles, obtained through transposon excision, showed the same phenotypes as legwd::Ds . Moreover, pollen germination could be restored, and the starch excess phenotype could be abolished in lines expressing the potato GWD homolog ( StGWD ) under a pollen-specific promoter. In these lines, where fertility was restored, homozygous plants for legwd::Ds were isolated, and showed the starch excess phenotype in the leaves. Overall, our results demonstrate the importance of starch phosphorylation and breakdown for pollen germination, and open up the prospect for analyzing the role of starch metabolism in leaves and fruits.     

Infrared microspectroscopic imaging of plant tissues: spectral visualization of Triticum aestivum kernel and Arabidopsis leaf microstructure

Infrared microspectroscopy is a tool with potential for studies of the microstructure, chemical composition and functionality of plants at a subcellular level. Here we present the use of high‐resolution bench top‐based infrared microspectroscopy to investigate the microstructure of Triticum aestivum L. (wheat) kernels and Arabidopsis leaves. Images of isolated wheat kernel tissues and whole wheat kernels following hydrothermal processing and simulated gastric and duodenal digestion were generated, as well as images of Arabidopsis leaves at different points during a diurnal cycle. Individual cells and cell walls were resolved, and large structures within cells, such as starch granules and protein bodies, were clearly identified. Contrast was provided by converting the hyperspectral image cubes into false‐colour images using either principal component analysis (PCA) overlays or by correlation analysis. The unsupervised PCA approach provided a clear view of the sample microstructure, whereas the correlation analysis was used to confirm the identity of different anatomical structures using the spectra from isolated components. It was then demonstrated that gelatinized and native starch within cells could be distinguished, and that the loss of starch during wheat digestion could be observed, as well as the accumulation of starch in leaves during a diurnal period.     

Spatiotemporal mating pattern variation in a wind‐pollinated Mediterranean shrub

Spatiotemporal variation in mating patterns is poorly known in wind‐pollinated plant species. Here, we analysed mating patterns of the wind‐pollinated dioecious shrub Pistacia lentiscus by genotyping 904 seeds from 30 mother plants with eight microsatellite markers in a high‐density population in two consecutive flowering seasons. We found significant differences in some mating system estimates between years, particularly in the levels of correlated paternity. Overall, within‐mothers correlated paternity was higher in 2007 than in 2006 (r_pWM = 0.085 and 0.030), which translated into an effective number of fathers (N_ep) of 11.8 and 33.6 respectively. Using a smoothing interpolation technique, we show that the effective pollen cloud was spatially structured in patches of high‐ and low‐genetic diversity, which do not remain constant from year to year. In 2006, the among‐mothers correlated paternity (r_pAM) showed no trend with distance, suggesting no restriction of pollen dispersal. However, in 2007, r_pAM was greater than zero at short distances, revealing the existence of small‐scale patterns of pollen dispersal. The fact that the studied seasons were climatically homogeneous during the flowering time suggested that the observed differences might be ascribed to between‐year phenological variation of individuals in the studied population or other (unknown) factors. Numerical simulations, based on the real data set, indicated that the clumping of males and decreasing plant density, which is related to different types of pollen limitation, greatly increase correlated mating in this wind‐pollinated species, which is of relevance under the frame of the continuous anthropogenic habitat disturbance suffered by Mediterranean ecosystems.     

The chemical characteristic and distribution of brassinosteroids in plants

Brassinosteroids represent a class of plant hormones with high-growth promoting activity. They are found at low levels in pollen, anthers, seeds, leaves, stems, roots, flowers, grain, and young vegetative tissues throughout the plant kingdom. Brassinosteroids are a family of about 60 phytosteroids. The article gives a comprehensive survey on the hitherto known brassinosteroids isolated from plants. The chemical characteristic of brassinosteroids is also presented.     

Comparison of CO2 and bicarbonate as inorganic carbon sources for triacylglycerol and starch accumulation in Chlamydomonas reinhardtii

Microalgae are capable of accumulating high levels of lipids and starch as carbon storage compounds. Investigation into the metabolic activities involved in the synthesis of these compounds has escalated since these compounds can be used as precursors for food and fuel. Here, we detail the results of a comprehensive analysis of Chlamydomonas reinhardtii using high or low inorganic carbon concentrations and speciation between carbon dioxide and bicarbonate, and the effects these have on inducing lipid and starch accumulation during nitrogen depletion. High concentrations of CO₂ (5%; v/v) produced the highest amount of biofuel precursors, transesterified to fatty acid methyl esters, but exhibited rapid accumulation and degradation characteristics. Low CO₂ (0.04%; v/v) caused carbon limitation and minimized triacylglycerol (TAG) and starch accumulation. High bicarbonate caused a cessation of cell cycling and accumulation of both TAG and starch that was more stable than the other experimental conditions. Starch accumulated prior to TAG and then degraded as maximum TAG was reached. This suggests carbon reallocation from starch‐based to TAG‐based carbon storage. Biotechnol. Bioeng. 2013; 110: 87–96. © 2012 Wiley Periodicals, Inc.     

Advanced radiogasometric method for the determination of the rates of photorespiratory and respiratory decarboxylations of primary and stored photosynthates under steady-state photosynthesis

An advanced radiogasometric method for the study of plant leaf CO₂ exchange is presented. The method enables determination of the rates of CO₂ fixation, photorespiration and respiration in the light under steady‐state photosynthesis and discrimination between primary and stored photosynthates as substrates of photorespiratory and respiratory decarboxylations. The method is based on the analysis of the time curves of ¹⁴CO₂ evolution from labeled primary and stored photosynthates in leaves previously exposed to ¹⁴CO₂. The molar rates of different decarboxylation reactions are calculated from the initial slopes of the curves taking into account the specific radioactivity of CO₂ fed to leaves and/or evolved from leaves. To estimate the contribution of primary and stored photosynthates, the measurements of ¹⁴CO₂ evolution are performed after feeding plant leaves for different periods with ¹⁴CO₂. Photorespiration and respiration are distinguished on the basis of data obtained from measurements of ¹⁴CO₂ evolution under normal (210 ml l⁻¹) and low (15 ml l⁻¹) concentrations of oxygen. A principally new method for the determination of the rate of intracellular refixation of respiratory CO₂ has been developed. The method is based on the measurements of ¹⁴CO₂ evolution from leaves into the medium of very high concentrations (30 ml l⁻¹) of ¹²CO₂, where the probability of refixation of ¹⁴CO₂ evolved inside the cell is close to zero. The results obtained were comparable with the data derived from parallel refixation measurements by means of gasometric methods. As an example of application, the data on CO₂ exchange in leaves of two contrasting groups of C₃‐species, differing in the ability of starch accumulation, are presented.     

Hemicellulose concentration and composition in plant cell walls under extreme carbon source–sink imbalances

Hemicelluloses account for one‐quarter of the global dry plant biomass and therefore are the second most abundant biomass fraction after cellulose. Despite their quantitative significance, the responsiveness of hemicelluloses to atmospheric carbon oversupply is still largely unknown, although hemicelluloses could serve as carbon sinks with increasing CO₂ concentrations. This study aimed at clarifying the role hemicelluloses play as carbon sinks, analogous to non‐structural carbohydrates (NSC), by experimentally manipulating the plants' carbon supply. Sixteen plant species from four different plant functional types (grasses, herbs, seedlings of broad‐leaved trees and conifers) were grown for 2 months in greenhouses at either extremely low (140 ppm), medium (280 ppm) or high (560 ppm) atmospheric CO₂ concentrations, thus inducing situations of massive C‐limitation or ‐oversupply. Above and belowground biomass as well as NSC significantly increased in all species and tissues with increasing CO₂ concentrations. Increasing CO₂ concentrations had no significant effect on total hemicellulose concentrations in leaves and woody tissues in all species, except for two out of four grass species, where hemicellulose concentrations increased with atmospheric CO₂ supply. Despite the overall stable total hemicellulose concentrations, the monosaccharide spectra of hemicelluloses showed a significant increase in glucose monomers in leaves of woody species as C‐supply increased. In summary, total hemicellulose concentrations in de novo built biomass seem to be largely unaffected by changed atmospheric CO₂ concentrations, while significant increases of hemicellulose‐derived glucose with increasing CO₂ concentrations in leaves of broad‐leaved and conifer tree seedlings showed differential responses among the different hemicellulose classes in response to varying CO₂ concentrations.     

Dynamics of storage reserve deposition during Brassica rapa L. pollen and seed development in microgravity

Pollen and seeds share a developmental sequence characterized by intense metabolic activity during reserve deposition before drying to a cryptobiotic form. Neither pollen nor seed development has been well studied in the absence of gravity, despite the importance of these structures in supporting future long-duration manned habitation away from Earth. Using immature seeds (3-15 d postpollination) of Brassica rapa L. cv. Astroplants produced on the STS-87 flight of the space shuttle Columbia, we compared the progress of storage reserve deposition in cotyledon cells during early stages of seed development. Brassica pollen development was studied in flowers produced on plants grown entirely in microgravity on the Mir space station and fixed while on orbit. Cytochemical localization of storage reserves showed differences in starch accumulation between spaceflight and ground control plants in interior layers of the developing seed coat as early as 9 d after pollination. At this age, the embryo is in the cotyledon elongation stage, and there are numerous starch grains in the cotyledon cells in both flight and ground control seeds. In the spaceflight seeds, starch was retained after this stage, while starch grains decreased in size in the ground control seeds. Large and well-developed protein bodies were observed in cotyledon cells of ground control seeds at 15 d postpollination, but their development was delayed in the seeds produced during spaceflight. Like the developing cotyledonary tissues, cells of the anther wall and filaments from the spaceflight plants contained numerous large starch grains, while these were rarely seen in the ground controls. The tapetum remained swollen and persisted to a later developmental stage in the spaceflight plants than in the ground controls, even though most pollen grains appeared normal. These developmental markers indicate that Brassica seeds and pollen produced in microgravity were physiologically younger than those produced in 1 g. We hypothesize that microgravity limits mixing of the gaseous microenvironments inside the closed tissues and that the resulting gas composition surrounding the seeds and pollen retards their development.     

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

Introduction –  RNA quality and integrity are critical for many studies in plant molecular biology. High‐quality RNA extraction from grapevine and other woody plants is problematic due to the presence of polysaccharides, polyphenolics and other compounds that bind or co‐precipitate with the RNA. Objective  – To develop an optimised cetyltrimethylammonium bromide (CTAB)‐based protocol, to reduce the time and cost of extraction without reducing quality and yield of RNA extracted from polysaccharide‐rich tissues of several plants. Methodology  – Several changes were introduced to the original CTAB protocol. All centrifugation steps were carried out at 4°C, the sample weight was decreased and the concentrations of PVP‐40 and LiCl were increased reducing incubation time prior to RNA precipitation. This rapid CTAB protocol was compared with six different RNA extraction methods from three grapevine tissues, namely, in vitro plantlets, and leaves and mature canes from actively growing field vines. Results –  The rapid CTAB method gave high‐quality RNA in only 3 h at low cost with efficiency equal to or higher than that obtained with other time‐consuming and expensive protocols. The procedure was applied to RNA extraction from other grapevine tissues and other woody species including olive, lemon, poplar, chestnut, apple, pear, peach, cherry, apricot, plum and kiwi fruit. RNA of high quality could be isolated from all tissues and from all species. Conclusion –  The study has shown that the improvement of a CTAB‐based protocol allows the rapid isolation of high‐quality RNA from grapevine and many woody species. Copyright © 2008 John Wiley & Sons, Ltd.     

Effect of Day Length and Night Temperature on Starch Accumulation and Degradation in Soybean

The effect of the day length on the accumulation and the degradationof the starch in leaf, stem and root tissues of prefloweringsoybean plants was determined by growing plants under a 7 or14 h light regime. As has been reported previously, the rateof starch accumulation by leaves was inversely related to daylength. High sucrose content was associated with a high rateof starch accumulation. Stem tissue showed diurnal fluctuationsin starch content and the rate of accumulation was also inverselyrelated to day length. This starch resulted from photosynthesiswithin the stem itself. A negligible amount of starch was foundin root tissue of both sets of plants. The rate of starch breakdown in leaves of 7 h plants was significantlyless than that in 14 h plants. Nevertheless, leaf starch inshort day length plants was depleted at least 4 h prior to theend of the dark period. In both sets of plants, degradationof stem starch started simultaneously with that in the leavesand continued throughout the dark period, although at a muchlower rate than that of leaves. Thus, stem starch acted as abuffer once leaf starch was depleted, providing carbohydratesto the plant, although in small quantities. To determine if soybean leaves adjust their rate of starch accumulationduring the light period to different dark period temperatures,plants were grown under temperature regimes of 30/20 ^°Cand 30/30 ^°C. Plants did not differ in rate of starch accumulationor CO₂ exchange rate, but did show large differences in growthcharacteristics. High temperature plants had significantly greaterleaf area and tended to have greater leaf area ratio. Thus,despite similar rates of starch accumulation on a leaf areabasis, high temperature plants accumulated greater amounts ofstarch on a per plant basis. Glycine max(L.)Merr., soybean reserve carbohydrates, remobilization, source-sink realtionships     

CO2 Exchange and Chlorophyll Fluorescence of Phospho-enolpyruvate Carboxylase Transgenic Rice Pollen Lines

To elucidate the photosynthetic physiological characteristics and the physiological inherited traits of rice （Oryza sativa L.） hybrids and their parents, physiological indices of photosynthetic CO2 exchange and chlorophyll fluorescence parameters were measured in leaves of the maize phosphoenolpyruvate carboxylase （PEPC） transgenic rice as the male parent, sp. japonica rice cv. 9516 as the female parent, and the stable JAAS45 pollen line. The results revealed that the PEPC gene could be stably inherited and trans- ferred from the male parent to the JAAS45 pollen line. Moreover, the JAAS45 pollen line exhibited high levels of PEPC activity, manifesting higher saturated photosynthetic rates, photosynthetic apparent quantum yield （AQY）, photochemical efficiency of photosystem II and photochemical and non-photochemical quenching, which indicated that the JAAS45 pollen line has a high tolerance to photo-inhibition/photooxidation under strong light and high temperature. Furthermore, JAAS45 was confirmed to still be a C3 plant by δ^13C carbon isotope determination and was demonstrated to have a limited photosynthetic C4 microcycle by feeding with exogenous C4 primary products, such as oxaloacetate or malate, or phosphoenolpyruvate. The present study explains the physiological inherited properties of PEPC transgenic rice and provides an expectation for the integration of traditional breeding and biological technology.     

Growth and Photosynthetic Carbon Metabolism in Tobacco Plants under an Oscillating CO2 Concentration in the Atmosphere

Abstract: The hypothesis for the present work was that photosynthetic acclimation to increased atmospheric CO₂ in Nicotiana tabacum could be prevented by an oscillating supply of CO₂. This was tested by growing half of the plants (for the 20 day period after sowing) at 700 μmol mol^‐1 CO₂ (S+ plants) and half at 350 μmol mol^‐1 CO₂ (S‐ plants) and thereafter switching them every 48 h from high to low CO₂ and vice versa. These plants were compared with plants continuously kept (from sowing onwards) at 350 μmol mol^‐1 CO₂ (C‐ plants) and 700 μmol mol^‐1 CO₂ (C+ plants). Switching plants from high to low CO₂ and vice versa (S+ and S‐) did not improve plant growth efficiency, as hypothesized. The extra carbon fixed by the leaves under increased CO₂ in the atmosphere, supplied either continuously or intermittently, was mostly stored as starch and not used to build additional structural biomass. The differences in final plant biomass, observed between S+ and S‐ plants, are explained by the CO₂ concentration in the atmosphere during the first 20 days after sowing, the oscillation in CO₂ supply thereafter is playing a smaller role in this response. Switching plants from high to low CO₂ and vice versa, also did not prevent down‐regulation of photosynthesis, despite lower leaf sugar concentrations than in C+ plants. Nitrate concentration decreased dramatically in C+, S+ and S‐ plants. The leaf C/N ratio was highest in C+ plants (ranging from 8 to 13), intermediate in S+ and S‐ plants (from 7 to 11) and lowest in C‐ plants (from 6 to 8). This supports the view that the balance between carbohydrates and nitrogen may have a triggering role in plant response under elevated CO₂. Carbon export rates by the leaves seem to be independent of total carbon assimilation, suggesting a sink limiting effect on tobacco growth and phototsynthesis under elevated CO₂.     

Identification of mutants in phosphorus metabolism

Phosphorus availability is often limiting for plant growth. However, little is known of the pathways and mechanisms that regulate phosphorus (P) uptake and distribution in plants. We have developed a screen based on the induction of secreted root acid phosphatase activity by low‐P stress to identify mutants of Arabidopsis thaliana with defects in P metabolism. Acid phosphatase activity was detected visually in the roots of A. thaliana seedlings grown in vitro on low‐P medium, using the chromogenic substrate, 5‐bromo‐4‐chloro‐3‐indolyl‐phosphate (BCIP). In low‐P stress conditions the roots of wild‐type plants stained blue, as the induced root acid phosphatase cleaved BCIP to release the coloured product. Potential mutants were identified as having white, or pale blue, roots under these conditions. Out of approximately 79 000 T‐DNA mutagenised seedlings screened, two mutants with reduced acid phosphatase staining were further characterised. Both exhibited reduced growth and differences in their P contents when compared to wild‐type A. thaliana. The mutant with the most severe phenotype, pho3, accumulated high levels of anthocyanins and starch in a distinctive visual pattern within the leaves. The phenotypes of these mutants are distinct from two previously identified phosphorus mutants (phol and pho2) and from an acid phosphatase deficient mutant (pupl) of A. thaliana. This suggested that the screening method was robust and might lead to the identification of further mutants with the potential for increasing our understanding of P nutrition.     

Discrete forms of amylose are synthesized by isoforms of GBSSI in pea

Amyloses with distinct molecular masses are found in the starch of pea embryos compared with the starch of pea leaves. In pea embryos, a granule-bound starch synthase protein (GBSSIa) is required for the synthesis of a significant portion of the amylose. However, this protein seems to be insignificant in the synthesis of amylose in pea leaves. cDNA clones encoding a second isoform of GBSSI, GBSSIb, have been isolated from pea leaves. Comparison of GBSSIa and GBSSIb activities shows them to have distinct properties. These differences have been confirmed by the expression of GBSSIa and GBSSIb in the amylose-free mutant of potato. GBSSIa and GBSSIb make distinct forms of amylose that differ in their molecular mass. These differences in product specificity, coupled with differences in the tissues in which GBSSIa and GBSSIb are most active, explain the distinct forms of amylose found in different tissues of pea. The shorter form of amylose formed by GBSSIa confers less susceptibility to the retrogradation of starch pastes than the amylose formed by GBSSIb. The product specificity of GBSSIa could provide beneficial attributes to starches for food and nonfood uses.