Determination of the cell lytic properties of amphiphilic inhibitors of the cytosolic phospholipase A2 against human platelets by measuring the liberation of serotonin with high-performance liquid chromatography and fluorescence detection

A procedure for the determination of the influence of detergents on the cell integrity of human platelets by measuring the release of serotonin with high-performance liquid chromatography and fluorescence detection is presented. After exposure of the platelets to the test compounds the cells and cell fragments, respectively, are centrifuged off. In the supernatants the liberated serotonin is determined directly without a further sample clean up. The amphiphilic inhibitors of cytosolic phospholipase A2 (cPLA2), arachidonyltrifluoromethyl ketone (AACOCF3), palmityltrifluoromethyl ketone (PACOCF3) and methyl arachidonylfluorophosphonate (MAFP), and the polyoxyethylene detergent Brij 58 were investigated for their cell lytic properties with this method. All compounds lysed the platelets liberating serotonin at a concentration of 33 microM. AACOCF, and Brij 58 even caused cell lysis at lower concentrations.     

Purification of endo-(1→3)-β-D-glucanases lysing yeast cell walls from Rhizoctonia solani

Three forms of $\text{endo}\text{-(1→3)-β-}\text{g}\text{-glucanases}$ lysing yeast cell walls from Rhizoctonia solani were separated by precipitation with ammonium sulfate and by successive chromatographies on CM Bio-Gel A and Bio-Gel P-60 or P-30, and were finally purified by substrate affinity chromatography on short-chain pachyman-AH-Sepharose CL 6B column. Each preparation was found to be homogeneous on gel filtration and by electrophoresis on acrylamide gel with sodium dodecyl sulfate. They exhibit high activity against insoluble pachyman, but only restricted activity against soluble short-chain pachyman. In the affinity chromatography, three enzymes were found to be strongly absorbed on the column, so that they could be easily eluted with substrate solution using biospecific counter-ligand. It was thus revealed that covalent binding of such a soluble glucan to aminohexyl-Sepharose provides a useful carrier for separation of $\text{endo}\text{-(1→3)-β-}\text{D}\text{-glucanases}$ lysing yeast cell walls.     

Plasmids of the cyanobacterium Synechocystis 6701

Abstract Plasmids were obtained from Synechocystis 6701 using a lysis method that employed a hemicellulase digestion procedure. Eight major bands were observed in the initial preparation. Four of the smaller plasmids were isolated using preparative agarose electrophoresis gels and identified by restriction endonuclease analysis. Chromosomal DNA was screened with 15 restriction enzymes and 6 ( Eco RI, Sst I, Hpa I, Bst EII, Acc I, and Bgl II) were effective. Analysis of DNA fragments from plasmids pSCY 1–4 indicated that each plasmid was unique and that their approximate sizes were 5, 7.5, 13.5 and 15 kb, respectively. Digestion of pSCY 1 and pSCY 4 with Bgl II produced DNA fragments that may be used to construct a conjugation vector for this unicellular cyanobacterium.     

一株高产细胞表面植酸酶酵母的实验研究

对一株高产细胞表面植酸酶酵母突变株WZ4菌的细胞植酸酶进行了研究。探讨了菌体生长与产酶的关系。结果表明:菌体在培养的前期植酸酶酶活很低,培养30h后酶活迅速增加,酶活在菌体生长的平衡期达到最大,该菌产植酸酶为非生长偶联型。在此基础了解WZ4菌细胞植酸酶的性质,实验表明:该酶的最适pH为5,最适温度为50℃,Km(以植酸钠为底物)为0666mmolL。通过磷对产酶影响因素的实验研究,初步得到WZ4菌产植酸酶受控于培养基中的磷浓度的结论,即最大产酶磷浓度为05mg100ml,当磷浓度大于10mg100ml时产酶被完全阻遏。     

酵母浸粉刺激以木薯为原料的丁醇生产的发酵相转型

在7L静态厌氧发酵罐下,使用\"非粮\"作物木薯替代玉米淀粉开展丁醇发酵。无论是传统发酵还是油醇萃取发酵,木薯粉丁醇发酵的性能均远不及以玉米淀粉为原料时的水平,主要体现在发酵产酸相向溶剂生产相的转型严重迟延或无法转型、发酵时间长、丁醇生产效率低。实验结果表明,当发酵相转型迟延出现后,添加2.5g/L的酵母浸粉,可以刺激丁酸/乙酸向丁醇/丙酮的转化、转型延迟时间缩短10~30h左右。在此条件下,传统和萃取发酵方式下的丁醇总产量分别达到12.95g/L和29.81g/L,丁醇生产效率与使用玉米淀粉为原料时基本持平。     

Methods of cell lysis and effect of detergents for the recovery of nitrile metabolizing enzyme from Amycolatopsis sp. IITR215

Nitrile metabolizing enzymes are of great industrial interest for the selective bio-transformation of nitriles and surface modification of synthetic polymers under mild reaction conditions. In the present work, isolated strain Amycolatopsis sp. IITR215 was cultivated in the bench top bioreactor for the recovery of maximum biomass of whole cell catalyst. Effect of different lyoprotectants was studied on nitrile metabolizing enzyme from Amycolatopsis sp. IITR215 in which sorbitol proved to be an efficient lyoprotectant. In physical and mechanical methods, only 30% activity was recovered while 85% activity was achieved in the enzymatic method using 2 g/l lysozyme. Very less activity was recovered during stationary phase when cells were grown in mineral base media containing 1 g/l yeast. Therefore, recovery of intracellular enzymes was enhanced by using different concentrations of sodium cholate and deoxycholate.     

生物被膜主动分散机制研究进展

细菌生物被膜(bacterial biofilm, BBF)为微生物栖息提供了所需要的保护屏障和生长微环境。生物被膜对抗菌药物的耐受性使得它在医学治疗等领域产生了严重的危害。因此如何分散被膜显得意义重大。综述了生物被膜主动分散的几种主要机制,包括降解酶的合成、运动力的恢复、表面活性剂的产生和细胞死亡。     

过量无机盐及谷氨酸抑制重组菌核黄素发酵

在重组枯草芽孢杆菌24/pMX45核黄素发酵中,酵母粉促进核黄素合成,酵母抽提物抑制核黄素合成。分析显示,酵母抽提物的无机离子和游离氨基酸含量均高于酵母粉。在酵母粉基础发酵培养基中,添加各种无机离子和游离氨基酸,使其含量与酵母抽提物相同。摇瓶发酵结果表明:过量的无机离子和谷氨酸对核黄素合成有显著的抑制作用。酵母抽提物含有较高浓度的谷氨酸,是其抑制核黄素合成的主要原因。     

太子参细胞悬浮培养及其皂苷含量分析

以太子参的幼叶为外植体,诱导培养获得太子参愈伤组织,并通过细胞悬浮培养获取皂苷.结果表明：用MS＋BA 0.2 mg L^-1＋2,4-D 1.0 mg L^-1＋KT 1.0 mgL^-1液体培养基可获得大量繁殖速度快、生长均匀一致的悬浮细胞.由细胞悬浮培养获得的太子参皂苷的HPLC色谱峰值与常规种植及组培苗的相同,但纯度较好.细胞悬浮培养约30 d时,每克干重细胞的培养液内可提取总皂苷量为2.13-2.92 mg,略低于大田常规种植所收获的每克干重太子参块根内的总皂苷含量（3.6-4.3 mg）,与组培苗收获的太子参块根内的总皂苷含量相近.     

The fission yeast cell cycle control gene cdc2: isolation of a sequence suc1 that suppresses cdc2 mutant function

Summary A DNA fragment called suc1 has been found to rescue cells mutated in the cell cycle control gene cdc2 of the fission yeast Schizosaccharomyces pombe. The suppressing activity of suc1 is observed when it is present on a multicopy number plasmid. The gene does not hybridise to cdc2 and maps elsewhere in the genome. Its effect is cdc2 allele specific suggesting that it interacts directly with the cdc2 gene function.     

Dielectrophoretic properties of yeast cells dividing by budding and by transversal fission

The dielectrophoretic behaviour of yeast cells dividing by budding or by transversal fission was analyzed. The results obtained show that the dielectrophoretic yield is a linear function of alternating voltage, cell concentration and the square root of the time of collection in all the species assayed. Dependence of the rate of collection on the frequency of the voltage applied (between 0.2 and 5 MHz) was also found. This behaviour is similar in the three microorganisms studied. The scale factor correlating the frequency spectrum for Saccharomyces cerevisiae and Saccharomycopsis lipolytica is proportional to cell size. However, these results can not be extended to Schizosaccharomyces pombe. A relationship between the dielectrophoretic yield and the age of the culture and the consumption of glucose has been established for the three yeast strains. Dielectrophoresis also permits the differentiation between viable and non-viable cells.     

Characterization of quillaja bark extracts and evaluation of their purity using liquid chromatography–high resolution mass spectrometry

In the course of development of semi-preparative liquid chromatographic methods for the isolation of individual quillaja saponins from Quillaja saponaria (L.), some commercially available quillaja bark extracts revealed a distinctive and characteristic pattern of additional peaks in the chromatogram that could not be attributed to saponins commonly present in quillaja. To identify these peaks, analytical procedures based on HPLC coupled with high resolution MS detection were optimized which allowed the identification of the additional saponins Mi saponin A, Mi saponin B, Mi saponin C, madhucoside A and madhucoside B. These compounds are known to be the main saponins of the Indian plant Madhuca longifolia (L.). Tandem MS experiments were performed for the unambiguous assignment of the sapogenin. Madhuca saponins yielded a characteristic fragment of protobassic acid, whereas quillaja saponins showed a fragment of quillaic acid as expected. In addition, samples from madhuca seed kernels were analysed to verify the origin of the characteristic chromatographic peak pattern observed frequently in commercially available quillaja bark extracts.     

Differences in cell viabilities of phytoplankton between spring and late summer in the northwest Pacific Ocean

Cell viabilities of phytoplankton in the Oyashio and Kuroshio-Oyashio transition regions of the northwest Pacific Ocean were examined in September 2003 (late summer) and May 2005 (spring) using a membrane permeability test. Specific lysis rates of the phytoplankton during late summer were also assessed by an esterase activity assay. In late summer, cyanobacteria Synechococcus spp. were > 2 × 10⁴ cells ml^− 1 and numerically dominated the phytoplankton communities. The cell viabilities of Synechococcus spp. and eukaryotic ultraphytoplankton (< 10 μm in size) were 60-79% and 26-41% in surface waters, respectively. The specific lysis rates of the phytoplankton were 0.12-0.67 d^− 1 in late summer. By contrast, in spring, eukaryotic cells were predominant in the phytoplankton communities. The cell viabilities of surface eukaryotic ultraphytoplankton in spring were > 70% and significantly higher than those in late summer. During spring, Synechococcus spp. only occurred with < 1 × 10⁴ cells ml^− 1 in the Kuroshio-Oyashio transition region, and their viabilities were 80%. In the Oyashio region where a spring diatom bloom developed, the viability of fucoxanthin-containing algae (mainly diatoms and prymnesiophytes) was ca. 90%. These results suggested that the cell viability of phytoplankton could vary seasonally with their community structure in the study area. The phytoplankton cell death in late summer was particularly significant for their loss process and could support the microbial food webs by supplying dissolved organic carbon (DOC) derived from the dead cells.     

Defective in Mitotic Arrest 1 (Dma1) Ubiquitin Ligase Controls G1 Cyclin Degradation

Progression through the G₁ phase of the cell cycle is controlled by diverse cyclin-dependent kinases (CDKs) that might be associated to numerous cyclin isoforms. Given such complexity, regulation of cyclin degradation should be crucial for coordinating progression through the cell cycle. In Saccharomyces cerevisiae, SCF is the only E3 ligase known to date to be involved in G₁ cyclin degradation. Here, we report the design of a genetic screening that uncovered Dma1 as another E3 ligase that targets G₁ cyclins in yeast. We show that the cyclin Pcl1 is ubiquitinated in vitro and in vivo by Dma1, and accordingly, is stabilized in dma1 mutants. We demonstrate that Pcl1 must be phosphorylated by its own CDK to efficiently interact with Dma1 and undergo degradation. A nonphosphorylatable version of Pcl1 accumulates throughout the cell cycle, demonstrating the physiological relevance of the proposed mechanism. Finally, we present evidence that the levels of Pcl1 and Cln2 are independently controlled in response to nutrient availability. This new previously unknown mechanism for G₁ cyclin degradation that we report here could help elucidate the specific roles of the redundant CDK-cyclin complexes in G₁.     

Genetic interactions among genes involved in the STT4-PKC1 pathway of Saccharomyces cerevisiae

Loss of yeast protein kinase C function results in three distinct phenotypes: staurosporine sensitivity, cell lysis and blockage of cell cycle progression at the G2/M boundary. Genetic analysis of the PKC1/STT1 protein kinase C gene and its interactions with STT4, encoding an upstream phosphatidylinositol 4-kinase, and BCK1, encoding a downstream protein kinase, reveal that they form part of a single pathway. However, the BCK1-20 mutation (a gain-of-function mutation of BCK1) or overexpression of PKC1 cannot suppress all of the phenotypes caused by the loss of STT4 function, strongly suggesting the existence of a branch point between STT4 and PKC1. We also describe the MSS4 gene, a multicopy suppressor of the temperature-sensitive stt4-1 mutation. MSS4 is predicted to encode a hydrophilic protein of 779 amino acid residues and is essential for cell growth. Based on genetic and biochemical data, we suggest that MSS4 acts downstream of STT4, but in a pathway that does not involve PKC1. GenBank accession number: The accession number for the MSS4 sequence reported in this paper is D13716.     

Acetic acid induces Sch9p-dependent translocation of Isc1p from the endoplasmic reticulum into mitochondria

Changes in sphingolipid metabolism have been linked to modulation of cell fate in both yeast and mammalian cells. We previously assessed the role of sphingolipids in cell death regulation using a well characterized yeast model of acetic acid-induced regulated cell death, finding that Isc1p, inositol phosphosphingolipid phospholipase C, plays a pro-death role in this process. Indeed, isc1? mutants exhibited a higher resistance to acetic acid associated with reduced mitochondrial alterations. Here, we show that Isc1p is regulated by Sch9p under acetic acid stress, since both single and double mutants lacking Isc1p or/and Sch9p have the same resistant phenotype, and SCH9 deletion leads to a higher retention of Isc1p in the endoplasmic reticulum upon acetic acid exposure. We also found that the higher resistance of all mutants correlates with higher levels of endogenous mitochondrial phosphorylated long chain bases (LCBPs), suggesting that changing the sphingolipid balance in favour of LCBPs in mitochondria results in increased survival to acetic acid. In conclusion, our results suggest that Sch9p pathways modulate acetic acid-induced cell death, through the regulation of Isc1p cellular distribution, thus affecting the sphingolipid balance that regulates cell fate.