Founder events and variation at microsatellite loci in an insular passerine bird, the Laysan finch (Telespiza cantans)

Historically documented founder events provide opportunities to assess the effects of population size reductions on genetic variation, but the actual magnitude of genetic change can be measured only when direct comparisons can be made to the source or ancestral population. We assayed variation at nine microsatellite loci in the translocated population of the Laysan finch ( Telespiza cantans ) at Pearl and Hermes reef (PHR), and compared the level of variation to that in the source population on Laysan Island. Heterogeneity in allele frequencies was highly significant at eight of the nine loci, primarily as a result of fluctuations in allele frequencies in the three PHR populations. Intra- and interpopulational measures of genetic diversity generally matched predictions based on the well-documented history of three islet populations at PHR: significantly lower numbers of alleles and polymorphic loci, as well as higher pairwise F _ST values and genetic distance, were observed for the two populations that underwent severe size reductions. Changes in heterozygosity at single loci were unpredictable, as both significant increases and decreases were observed in founder populations. A significant excess of heterozygotes was found in two populations and was highly significant over all four finch populations ( P < 0.003). Estimates of effective population size from temporal changes in heterozygosity and allele frequencies were very small ( N _e≤ 30) as a result of the founding events and the constraints of islet area on population numbers. We concluded that the PHR population is not adequate as a secondary genetic reserve for T. cantans , and an alternative refuge needs to be established.     

Genetic structure and mating system in the palila, an endangered Hawaiian honeycreeper, as assessed by DNA fingerprinting

We conducted DNA fingerprinting analyses to ascertain the mating system and population genetic structure of the palila, an endangered Hawaiian honeycreeper, which occupies a fragmented range on the Mauna Kea volcano of the island of Hawai'i. DNA fingerprinting of twelve complete families from the Pu'u La'au population revealed no evidence of extrapair fertilization or intraspecific brood parasitism. Band-sharing coefficients from fingerprints produced with two probes revealed that the large Pu'u La'au population on the southwest slope of Mauna Kea, and a smaller, geographically separate population on the east slope (at Kanakaleonui) had relatively high and virtually identical levels of minisatellite variability (mean S of 0.27 for each population based on combined data of M13 and Jeffreys 33.15 probes). The two populations also had nearly identical allele frequencies based on their mean corrected similarity, S_ij, of 0.98. These data suggest that the two populations have not been fragmented long and/or have sufficient current gene flow to ameliorate any affects of genetic drift. We conclude that present levels of inbreeding are low within both populations, and that proposed translocations of individuals from Pu'u La'au to Kanakaleonui appear appropriate from a genetic standpoint.     

Habitat availability,hunting or poaching: what affects distribution and density of large mammals in western Tanzanian woodlands?

Game reserves (GR) in Tanzania have been found to support similar or lower densities of large mammals compared with National parks (NP). But as these areas usually differ considerably not only in regard to management but also to environmental factors, we assessed the relative importance of vegetation cover, species‐specific habitat preferences and legal (trophy hunting) and illegal off‐take for observed differences in species‐specific densities. In the Katavi ecosystem, open habitats were characteristic elements of Katavi NP, while Rukwa GR was dominated by miombo forest. In an inter‐specific comparison, density differences were moderately correlated with preferences for open habitats, and with estimates of combined legal and illegal off‐take but not with one of these separately. In a multiple linear regression, open habitat preference was found to explain 39.6% of the density differences between the two protected areas. This analysis suggests that the broad‐scale pattern of most species’ distributions is governed by differing vegetation cover but that several species are overexploited by illegal (elephant, giraffe, buffalo, bush pig, warthog) or combined off‐take (hippopotamus, eland, waterbuck), thus emphasizing the need for quota readjustments and a more efficient anti‐poaching control.     

Rampant drift in artificially fragmented populations of the endangered tidewater goby (Eucyclogobius newberryi)

Habitat fragmentation and its genetic consequences are a critically important issue in evaluating the evolutionary penalties of human habitat modification. Here, we examine the genetic structure and diversity in naturally subdivided and artificially fragmented populations of the endangered tidewater goby (Eucyclogobius newberryi), a small fish restricted to discrete coastal lagoons and estuaries in California, USA. We use five naturally fragmented coastal populations from a 300‐ km spatial scale as a standard to assess migration and drift relative to eight artificially fragmented bay populations from a 30‐ km spatial scale. Using nine microsatellite loci in 621 individuals, and a 522‐base fragment of mitochondrial DNA control region from 103 individuals, we found striking differences in the relative influences of migration and drift on genetic variation at these two scales. Overall, the artificially fragmented populations exhibited a consistent pattern of higher genetic differentiation and significantly lower genetic diversity relative to the naturally fragmented populations. Thus, even in a species characterized by habitat isolation and subdivision, further artificial fragmentation appears to result in substantial population genetic consequences and may not be sustainable.     

气候变化背景下秦岭地区羚牛生境脆弱性评估及适应性保护对策

脆弱性是指物种受气候变化影响的程度,开展脆弱性评估工作有助于人类认识气候变化对野生动物的影响,为制定野生动物适应气候变化的保护对策提供科学依据。采用最大熵模型评估气候变化背景下秦岭地区羚牛(Budorcas taxicolor bedfordi)生境脆弱性。结果表明：(1)当前秦岭地区羚牛适宜生境总面积为6473 km²,到2050s年,预测秦岭地区羚牛适宜生境总面积为4217 km²,减少34.85%,羚牛适宜生境将向更高海拔地区转移,转移约210 m;(2)已建保护区覆盖49.82%当前羚牛适宜生境,尚有3248 km²的适宜生境处于保护区之外;到2050s年,保护区覆盖了43.87%适宜生境,尚有2367 km²的适宜生境未被保护;(3)到2050s年,当前分布在太白县、佛坪县、洋县和宁陕县等地区的3490 km²羚牛适宜生境将会成为生境脆弱区域,丧失53.92%;(4)分布在秦岭核心区域的2983 km²当前和2050s年保持不变适宜生境,将成为羚...     

Ecology of spawning humpback chub, Gila cypha, in the Little Colorado River near Grand Canyon, Arizona

The morphologically unique and endangered humpback chub, Gila cypha, is found in canyon-bound reaches of the Colorado River and its tributaries. Now limited to six isolated reproducing populations, this species is believed to have been once distributed over a large portion of the mainstem river. Because the species inhabits remote canyon areas, little is known about its spawning ecology. The largest remaining population occurs in the lower Little Colorado River (LCR) near Grand Canyon, where we conducted a three-year study of spawning ecology during spring (March-June) 1993–1995. We analyzed seasonal patterns of movement, population density, relative condition, spawning scores, and frequency of ripe condition and fin abrasions and compared these data with seasonal discharge and water temperature to determine spawning phenology and ecology. Spawning commenced in late March, peaked in mid-April, and waned in mid-May. A high proportion of males remained ripe over this period, whereas ripe females were relatively abundant only in April. Increased densities of adult fish in March-April and rapid declines in May-June coupled with recaptures of 18.4% of these adults in the Colorado River suggest that a portion of the population migrated from the Colorado River into the LCR to spawn and then returned. Ripe males aggregated in areas of complex habitat structure with high angular variation in bottom profiles (matrix of large boulders, travertine masses combined with chutes, runs and eddies, 0.5–2.0 m deep) and were associated with deposits of clean gravel. Ripe females appeared to move to these male aggregations to spawn. Near-spawning (including gravid) females and non-spawning fish used similar habitats and were segregated but close (< 50 m) to habitats occupied by aggregations of ripe males. Abrasions on anal and lower caudal fins of males and females suggest that spawning involves contact with gravel substrates, where semi-adhesive eggs are deposited and fertilized. The findings of this study should aid recovery efforts for humpback chub by identifying spawning habitat within the historic distributional range where additional spawning stocks could be established.     

Deleterious effects by mosquitofish (Gambusia affinis) on the endangered fire salamander (Salamandra infraimmaculata)

Invasive fishes, via competition and predation, may be an important factor in endangering populations of amphibians and other aquatic fauna. The mosquitofish, Gambusia affinis , commonly stocked into amphibian breeding sites for mosquito control worldwide, has recently been found in some breeding sites of the endangered fire salamander Salamandra infraimmaculata in northern Israel. A comparison of Salamandra larvae in natural pools varying in Gambusia densities suggested that Gambusia negatively affects Salamandra by causing damage to its appendages, in particular, its tailfin (as manifested in a smaller tail:body ratio). Comparison of the same pool before and after mosquitofish introduction suggested strong negative effects on larval performance and number of emerging metamorphs. To explicitly test the hypothesis that Gambusia negatively affects Salamandra larval development, growth and survival, we conducted a replicated outdoor mesocosm experiment. In this experiment, we also tested how habitat structural complexity, in the form of radiating cords simulating artificial vegetation, might mediate damage caused by Gambusia . We used a two-by-two factorial design: the presence or absence of increased structural complexity crossed with the presence or absence of mosquitofish. After a short period, mosquitofish strongly reduced larval wet weight and survival, and increased body damage in the form of a reduced larval tail:body ratio and partially missing gills and limbs. No Salamandra larvae exposed to mosquitofish survived to metamorphosis in either habitat type. We conclude that Gambusia strongly and negatively affects Salamandra larvae and that the introduction of Gambusia into sites containing Salamandra is inconsistent with the goal of preserving this endangered urodele.