Heuristics for the Hodgkin–Huxley system

Hodgkin and Huxley (HH) discovered that voltages control ionic currents in nerve membranes. This led them to describe electrical activity in a neuronal membrane patch in terms of an electronic circuit whose characteristics were determined using empirical data. Due to the complexity of this model, a variety of heuristics, including relaxation oscillator circuits and integrate-and-fire models, have been used to investigate activity in neurons, and these simpler models have been successful in suggesting experiments and explaining observations. Connections between most of the simpler models had not been made clear until recently. Shown here are connections between these heuristics and the full HH model. In particular, we study a new model (Type III circuit): It includes the van der Pol-based models; it can be approximated by a simple integrate-and-fire model; and it creates voltages and currents that correspond, respectively, to the h and V components of the HH system.     

Estimating the Development Assistance for Health Provided to Faith-Based Organizations, 1990–2013

Background

Faith-based organizations (FBOs) have been active in the health sector for decades. Recently, the role of FBOs in global health has been of increased interest. However, little is known about the magnitude and trends in development assistance for health (DAH) channeled through these organizations.

Material and Methods

Data were collected from the 21 most recent editions of the Report of Voluntary Agencies. These reports provide information on the revenue and expenditure of organizations. Project-level data were also collected and reviewed from the Bill & Melinda Gates Foundation and the Global Fund to Fight AIDS, Tuberculosis and Malaria. More than 1,900 non-governmental organizations received funds from at least one of these three organizations. Background information on these organizations was examined by two independent reviewers to identify the amount of funding channeled through FBOs.

Results

In 2013, total spending by the FBOs identified in the VolAg amounted to US$1.53 billion. In 1990, FB0s spent 34.1% of total DAH provided by private voluntary organizations reported in the VolAg. In 2013, FBOs expended 31.0%. Funds provided by the Global Fund to FBOs have grown since 2002, amounting to $80.9 million in 2011, or 16.7% of the Global Fund’s contributions to NGOs. In 2011, the Gates Foundation’s contributions to FBOs amounted to $7.1 million, or 1.1% of the total provided to NGOs.

Conclusion

Development assistance partners exhibit a range of preferences with respect to the amount of funds provided to FBOs. Overall, estimates show that FBOS have maintained a substantial and consistent share over time, in line with overall spending in global health on NGOs. These estimates provide the foundation for further research on the spending trends and effectiveness of FBOs in global health.     

Guidelines for the Tetra-Primer ARMS–PCR Technique Development

The tetra-primer amplification refractory mutation system–polymerase chain (ARMS–PCR) reaction is a simple and economical method to genotype single-nucleotide polymorphisms (SNPs). It uses four primers in a single PCR and is followed just by gel electrophoresis. However, the optimization step can be very hardworking and time-consuming. Hence, we propose to demonstrate and discuss critical steps for its development, in a way to provide useful information. Two SNPs that provided different amplification conditions were selected. DNA extraction methods, annealing temperatures, PCR cycles protocols, reagents, and primers concentration were also analyzed. The use of tetra-primer ARMS–PCR could be impaired for SNPs in DNA regions rich in cytosine and guanine and for samples with DNA not purified. The melting temperature was considered the factor of greater interference. However, small changes in the reagents concentration significantly affect the PCR, especially MgCl₂. Balancing the inner primers band is also a key step. So, in order to balance the inner primers band, intensity is important to observe which one has the weakest band and promote its band by increasing its concentration. The use of tetra-primer ARMS–PCR attends the expectations of modern genomic research and allows the study of SNPs in a fast, reliable, and low-cost way.     

Kakapo,a Novel Cytoskeletal-associated Protein Is Essential for the Restricted Localization of the Neuregulin-like Factor,Vein, at the Muscle–Tendon Junction Site

In the Drosophila embryo, the correct association of muscles with their specific tendon cells is achieved through reciprocal interactions between these two distinct cell types. Tendon cell differentiation is initiated by activation of the EGF-receptor signaling pathway within these cells by Vein, a neuregulin-like factor secreted by the approaching myotube. Here, we describe the cloning and the molecular and genetic analyses of kakapo, a Drosophila gene, expressed in the tendons, that is essential for muscle-dependent tendon cell differentiation. Kakapo is a large intracellular protein and contains structural domains also found in cytoskeletal-related vertebrate proteins (including plakin, dystrophin, and Gas2 family members). kakapo mutant embryos exhibit abnormal muscle-dependent tendon cell differentiation. A major defect in the kakapo mutant tendon cells is the failure of Vein to be localized at the muscle–tendon junctional site; instead, Vein is dispersed and its levels are reduced. This may lead to aberrant differentiation of tendon cells and consequently to the kakapo mutant deranged somatic muscle phenotype.     

Birch pollen production,transport and deposition for the period 1984–1993 at Kevo,northernmost Finland

Summary Betula pollen production and flowering, pollen transport and pollen deposition are considered for the mountain birch region of northern Finland for the ten-year period 1984–1993. The most abundant flowering year was 1989 and, after that, 1985. In these years the highest values were also recorded for pollen in the air. There is a significant correlation between the amount of pollen released and the thermal sum of the previous year. In terms of pollen deposition the peak years were 1989 and 1986. The correlation between the amount of pollen in the air and that being deposited on the ground is also statisticaly significant. It is evident that some birch pollen is already present in the air before local flowering begins and that, in some years, this non-local pollen can account for more than 20% of the yearly total. This preflowering proportion was highest in 1985 and 1993, the latter being a prolific flowering year in the south of the country. There is a clear relationship between the proportion of the non-local pollen in the air and the proportion ofBetula pubescens/pendula type pollen deposited on the ground and, conversely, there is a significant correlation between the amount of local pollen in the air and the amount ofBetula tortuosa plusB. nana type pollen being deposited on the ground. The questions both of the viability of this long-distance pollen and of its ability to cause allergic reactions are considered. An assessment is also made of the degree to which fossil birch pollen assemblages can be realistically interpreted in terms of local vegetation if a varying proportion of the same pollen type is non-local.     

The Status of the Stock and the Current Fishery for the Atka Mackerel,Pleurogrammus monopterygius (Pallas, 1810), in the Olyutorsky–Navarin Area,Bering Sea

Russian Journal of Marine Biology - The dynamics of the Atka mackerel stock in the Olyutorsky–Navarin area in 1994–2019 is inferred from bottom-trawl surveys, fishery statistics,...     

Seasonal effects on the sleep–wake cycle,the rest–activity rhythm and quality of life for Japanese and Thai older people

Background: The sleep-wake cycle and the rest–activity rhythm are known to change with aging, and such changes have been implicated in higher levels of depression as well as an increased incidence of dementia. However, information supporting seasonal changes in the sleep–wake cycle, the rest–activity rhythm and quality of life in older community-dwelling people remains insufficient. The aim of the present study was to prospectively investigate seasonal effects on the sleep–wake cycle, the rest–activity rhythm and quality of life among older people living in areas of Japan or Thailand with different climate classifications.

Method: The survey was conducted from March 2016 to May 2017, and 109 participants were recruited from Japan and Thailand: 47 older people living in Akita prefecture, Japan, and 62 older people living in Chiang Mai or Nakhon Ratchasima, Thailand. According to the Köppen–Geiger classification of Asian climates comprising tropical, desert, steppe, temperate and subarctic climates, Akita prefecture, which is located in northern Japan, is classified as a humid subarctic climate, while the Thai study areas are classified as tropical savanna. To monitor parameters of the sleep–wake cycle during nighttime (e.g. total sleep time, sleep latency, sleep efficiency, awaking time and frequency of sleep interruptions) and to calculate parameters of the rest–activity rhythm over the 24 h profile (e.g., interdaily stability, intradaily variability, relative amplitude, mean of least active 5 h period and mean of most active 10 h period), all the participants from both countries wore an Actiwatch 2 device on their nondominant wrist continuously for 7 days during each local season. The World Health Organization Quality of Life Questionnaire-BREF (WHOQOL-BREF) was also assessed during each local season.

Results: The final sample size was 37 older people living in Akita prefecture, Japan, and 44 older people living in Thailand; these subjects completed the data collections during each local season. The dropout rates were 21% in Japan and 29% in Thailand. The results for the Japanese subjects showed a significantly shorter sleep time with higher levels of activity during the nighttime on summer (p < 0.001) and a fragmented rest–activity rhythm over the 24 h profile on winter (p < 0.001). The older Thai participants exhibited a poor state of night sleeping year-round, and a significant relationship was observed between seasonal variations in motor activity and the social domain of WHOQOL-BREF for each Thai season (|r| = 0.4, p < 0.01).

Conclusion: These findings provide new and important information regarding seasonal effects on the sleep–wake cycle, the rest–activity rhythm and quality of life in older community-dwelling people living in two different Asian climates. Consequently, clinical preventions targeting such seasonal variations might be useful for improving the quality of life of older Japanese and Thai individuals.     

Search for Protein Markers for the Genetic CMS–Rf System in Sunflower

Pollen and anthers of the F₁ hybrid with the restored fertility and the parental forms, a maternal male-sterile line harboring the mitochondrial orfH522 gene and a paternal male-fertile line harboring dominant alleles of the nuclear Rf gene, were studied. In order to find protein markers for the genetic CMS–Rf system in sunflower, we analyzed cytoplasmic proteins by disc electrophoresis under denaturing conditions. As a result, a protein fraction with a mol wt of 43 kD specific for cytoplasmic proteins of the paternal anthers, and a protein fraction with a mol wt of 16 kD specific for cytoplasmic proteins of the maternal anthers, were detected. The electrophoretic patterns of water-soluble proteins from the hybrid and paternal lines did not differ.     

New HPLC–MS method for the simultaneous quantification of the antileukemia drugs imatinib,dasatinib, and nilotinib in human plasma

A new method using high performance liquid chromatography coupled with electrospray mass spectrometry is described for the quantification of plasma concentration of tyrosine kinase inhibitors imatinib, dasatinib and nilotinib. A simple protein precipitation extraction procedure was applied on 250 μl of plasma aliquots. Chromatographic separation of drugs and Internal Standard (quinoxaline) was achieved with a gradient (acetonitrile and water + formic acid 0.05%) on a C18 reverse phase analytical column with 20 min of analytical run, at flow rate of 1 ml/min. Mean intra-day and inter-day precision for all compounds were 4.3 and 11.4%; mean accuracy was 1.5%; extraction recovery ranged within 95 and 114%. Calibration curves ranged from 10,000 to 62.5 ng/ml. The limit of quantification was set at 78.1 ng/ml for imatinib and at 62.5 ng/ml for dasatinib and nilotinib. This novel developed methodology allows a specific, sensitive and reliable simultaneous determination of the three tyrosine kinase inhibitors imatinib, dasatinib and nilotinib in a single chromatographic run, useful for drugs estimation in plasma of patients affected by chronic myeloid leukemia.     

Novel opportunities for the exploitation of host–microbiome interactions in the intestine

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Estimation of the Parameters for Tremograms According to the Eskov–Zinchenko Effect

The features of the chaotic dynamics of parameters of the neuromuscular system (tremors) were studied using conventional and novel biological methods based on a multidimensional phase-space representation. The dynamics of involuntary micromovements of limbs (finger tremor) both in the relaxation phase (F = 0) and under static load (F = 3N) was manifested in a change in the number of “coincidences” of randomly selected sample pairs (k) of matrices (15 × 15) in paired comparison of tremograms, which demonstrated the global statistical instability of the samples (statistical distribution functions f(x), spectral densities of signals, and autocorrelation A(t)). The samples that result from one experiment cannot be randomly repeated in the next experiment (with the same homeostasis). This represents a quantitative measure of the Eskov–Zinchenko effect in the analysis of chaotically changing statistical distribution functions of tremogram samples. In this paper, the use of quasi-attractor parameters of tremograms (their areas) is proposed to represent changes in the neuromuscular system when passing from one homeostasis to another (G₁ ≠ G₂).

     

Combined biological–chemical procedure for the mineralization of TNT

Contamination of ground and surface water with 2,4,6-trinitrotoluene (TNT) and its biological and chemical transformation products are a persisting problem at former TNT production sites. We have investigated the photochemical degradation of TNT and its aminodinitro-(ADNT) and diaminonitrotoluene (DANT) metabolites using OH-radical generating systems like Fenton and hydrogen peroxide irradiated with UV, in order to compare the degradation and mineralization rate of ADNT- and DANT-isomers with TNT itself. As a result, we find that the aminoderivatives were mineralized much faster than TNT. Consequently, as ADNTs and DANTs are the known dead-end products of biological TNT degradations, we have combined our photochemical procedure with a preceding biological treatment of TNT by a mixed culture from sludge of a sewage plant. This consecutive degradation procedure, however, shows a reduced mineralization rate of the ADNTa and DANTs in the biologically derived supernatant as compared to the pure substances, suggesting that during the biological TNT treatment by sludge competing substrates are released into the solution, and that a more defined biological procedure would be necessary in order to achieve an effective, ecologically and economically acceptable mineralization of TNT from aqueous systems.     

A dual process for the coupled Wright–Fisher diffusion

Journal of Mathematical Biology - Discrete-state stochastic models are a popular approach to describe the inherent stochasticity of gene expression in single cells. The analysis of such models is...     

On the Delayed Ross–Macdonald Model for Malaria Transmission

The feedback dynamics from mosquito to human and back to mosquito involve considerable time delays due to the incubation periods of the parasites. In this paper, taking explicit account of the incubation periods of parasites within the human and the mosquito, we first propose a delayed Ross–Macdonald model. Then we calculate the basic reproduction number R ₀ and carry out some sensitivity analysis of R ₀ on the incubation periods, that is, to study the effect of time delays on the basic reproduction number. It is shown that the basic reproduction number is a decreasing function of both time delays. Thus, prolonging the incubation periods in either humans or mosquitos (via medicine or control measures) could reduce the prevalence of infection. S. Ruan’s research was partially supported by NIH grants P20RR020770-02 and R01GM083607-01, NSF grant DMS-0715772. D. Xiao’s research was supported by the National Natural Science Fund (NNSF) of China.