Leaf silicon content in banana (Musa spp.) reveals the weathering stage of volcanic ash soils in Guadeloupe

Several plant species accumulate silicon, which is taken up by roots in soil solution. The Si concentration in soil solution can be governed by silicate dissolution and formation, and thus soil constitution. Here, we study the Si leaf content of mature banana plants (Musa acuminata cv Grande Naine) cropped on soils derived from andesitic ash in Guadeloupe through standard foliar analysis. The soils strongly differ in weathering stage and total Si content. The most desilicated soils (Andosol–Nitisol–Ferralsol) occur in the wettest areas, on the Eastern slopes (Es) of the volcano exposed to rain bearing winds. Least weathered soils (Andosol–Cambisol) occur on Western slopes (Ws). The average leaf Si concentration ranges from 2.7 to 3.9 g kg^?1 for bananas cropped in Es soils, and from 7.7 to 9.6 g kg^?1 in Ws soils. The leaf Si concentrations are lowest for the Es gibbsite-rich Andosols and Ferralsols. The leaf Si concentration is positively correlated with soil CaCl₂-extractable Si content, soil Si content and total reserve in weatherable minerals. The silicon content of banana leaves thus reveals the weathering stage of volcanic ash soils in Guadeloupe.     

Insecticide-tolerant and plant growth promoting <Emphasis Type="Italic">Bradyrhizobium</Emphasis> sp. (<Emphasis Type="Italic">vigna</Emphasis>) improves the growth and yield of greengram [<Emphasis Type="Italic">Vigna radiata</Emphasis> (L.) Wilczek] in insecticide-stressed soils

This study was designed to identify rhizobial strains specific to greengram expressing higher tolerance against insecticides, fipronil and pyriproxyfen, and synthesizing plant growth regulators even amid insecticide-stress. Of the 50 bradyrhizobial isolates, the Bradyrhizobium sp. strain MRM6 showed tolerance up to 1,600 μg mL⁻¹ against each of fipronil and pyriproxyfen. The tolerant Bradyrhizobium sp. (vigna) produced plant growth promoting substances in substantial amounts, both in the presence and absence of insecticides. The strain MRM6 was further used to investigate its impact on greengram grown in soils treated with 200 (the recommended dose), 400 and 600 μg kg⁻¹ soil of fipronil and 1,300 (the recommended dose), 2,600 and 3,900 μg kg⁻¹ soil of pyriproxyfen. Fipronil at 600 μg kg⁻¹ soils and pyriproxyfen at 3,900 μg kg⁻¹ soils had greatest toxic effects and decreased plant biomass, symbiotic efficiency, nutrient uptake and seed yield of greengram plants. The Bradyrhizobium sp. (vigna) inoculant when used with fipronil and pyriproxyfen significantly increased the measured parameters compared to the plants grown in soils treated solely with the same concentration of each insecticide. This study inferred that the Bradyrhizobium sp. (vigna) strain MRM6 may be exploited as bio-inoculant to increase the productivity of greengram exposed to insecticide-stressed soils.     

Plant silicon isotopic signature might reflect soil weathering degree

Plants fractionate Si isotopes which provides a useful Si tracer in the Si soil-plant cycle. This study reports plant Si content and Si-isotopic signatures in mature banana plants grown on soils with different weathering degree, but all developed from basaltic pyroclasts in the Mungo area, Cameroon. The δ³⁰Si compositions were determined in various plant parts and soil surface horizons by MC-ICP-MS in dry plasma mode with external Mg doping to a precision of ± 0.15‰ (± 2σ_SD). The Si-isotopic compositions in banana plants grown on weathered clayey soils (+0.54 ± 0.15‰) are heavier than on weakly developed soils rich in fresh ash and pumice (+0.02 ± 0.15‰). The corresponding bulk soils display lower δ³⁰Si value in weathered soil (?1.41‰) than in poorly developed soil (?0.41‰). We suggest that the dissolved Si source for the plant, governed firstly by dissolution of easily weatherable minerals, was isotopically enriched in heavy isotopes through clay formation over long periods. At seasonal to annual time scale, this source is influenced by a combination of following processes: Si adsorption of light isotopes onto Fe oxides, plant Si uptake and recycling in surface horizons. This would provide an isotopically heavier Si source in the more weathered soil since the Fe oxides content increases with weathering. Plant Si-isotopic signature might thus reflect the soil weathering degree. This study further suggests that in addition to weathering processes, rivers isotopic signatures likely depend on the fate of phytoliths in the soil-plant-river system.     

Silicate-Mediated Alleviation of Pb Toxicity in Banana Grown in Pb-Contaminated Soil

Silicate (Si) can enhance plant resistance or tolerance to the toxicity of heavy metals. However, it remains unclear whether Si can ameliorate lead (Pb) toxicity in banana (Musa xparadisiaca) roots. In this study, treatment with 800 mg kg⁻¹ Pb decreased both the shoot and root weight of banana seedlings. The amendment of 800 mg kg⁻¹ Si (sodium metasilicate, Na₂SiO₃·9H₂O) to the Pb-contaminated soil enhanced banana biomass at two growth stages significantly. The amendment of 800 mg kg⁻¹ Si significantly increased soil pH and decreased exchangeable Pb, thus reducing soil Pb availability, while Si addition of 100 mg kg⁻¹ did not influence soil pH. Results from Pb fractionation analysis indicated that more Pb were in the form of carbonate and residual-bound fractions in the Si-amended Pb-contaminated soils. The ratio of Pb-bound carbonate to the total Pb tended to increase with increasing growth stages. Treatment with 100 mg kg⁻¹ Si had smaller effects on Pb forms in the Si-amended soils than that of 800 mg kg⁻¹ Si. Pb treatment decreased the xylem sap greatly, but the addition of Si at both levels increased xylem sap and reduced Pb concentration in xylem sap significantly in the Si-amended Pb treatments. The addition of Si increased the activities of POD, SOD, and CAT in banana roots by 14.2% to 72.1% in the Si-amended Pb treatments. The results suggested that Si-enhanced tolerance to Pb toxicity in banana seedlings was associated with Pb immobilization in the soils, the decrease of Pb transport from roots to shoots, and Si-mediated detoxification of Pb in the plants.     

Functional Diversity of Culturable Bacterial Communities in the Rhizosphere in Relation to Fine-root and Soil Parameters in Alder Stands on Forest, Abandoned Agricultural, and Oil-shale Mining Areas

Grey alder (Alnus incana) and black alder (Alnus glutinosa) stands on forest land, abandoned agricultural, and reclaimed oil-shale mining areas were investigated with the aim of analysing the functional diversity and activity of microbial communities in the soil–root interface and in the bulk soil in relation to fine-root parameters, alder species, and soil type. Biolog Ecoplates were used to determine community-level physiological profiles (CLPP) of culturable bacteria in soil–root interface and bulk soil samples. CLPP were summarized as AWCD (average well color development, OD 48 h⁻¹) and by Shannon diversity index, which varied between 4.3 and 4.6 for soil–root interface. The soil–root interface/bulk soil ratio of AWCD was estimated. Substrate-induced respiration (SIR) and basal respiration (BAS) of bulk soil samples were measured and metabolic quotient (Q = BAS/SIR) was calculated. SIR and Q varied from 0.24 to 2.89 mg C g⁻¹ and from 0.12 to 0.51, respectively. Short-root morphological studies were carried out by WinRHIZO^TM Pro 2003b; mean specific root area (SRA) varied for grey alder and black alder from 69 to 103 and from 54 to 155 m² kg⁻¹, respectively. The greatest differences between AWCD values of culturable bacterial communities in soil–root interface and bulk soil were found for the young alder stands on oil-shale mining spoil and on abandoned agricultural land. Soil–root interface/bulk soil AWCD ratio, ratio for Shannon diversity indices, and SRA were positively correlated. Foliar assimilation efficiency (FOE) was negatively correlated with soil–root interface/bulk soil AWCD ratio. The impact of soil and alder species on short-root morphology was significant; short-root tip volume and mass were greater for black alder than grey alder. For the investigated microbiological characteristics, no alder-species-related differences were revealed.     

Soil particle accumulation in termite (Macrotermes bellicosus) mounds and the implications for soil particle dynamics in a tropical savanna Ultisol

This study investigated the influence of mound-building termites on soil particle dynamics on the land surface and in soil-forming processes by examining the amount of soil particles in mound structures of Macrotermes bellicosus in a highly weathered Ultisol of tropical savanna. Soil particle turnover via the mounds was estimated using particle stock data and soil turnover data from previous studies. A 4-ha study plot with six mounds of relatively uniform shape and size was investigated. Soil mass constituting the mounds was 6,166 ± 1,581 kg mound⁻¹ within which the mound wall and nest body accounted for 5,002 ± 1,289 and 1,164 ± 293 kg, respectively. The mound wall contained a significantly larger amount of clay (252 ± 9.97 g kg⁻¹) balanced with a lower sand content (676 ± 26.5 g kg⁻¹) than in the adjacent surface (Ap1) horizon, (46.4 ± 12.8 g clay kg⁻¹; 866 ± 83.2 g sand kg⁻¹); the nest body had much higher clay content (559 ± 51.0 g kg⁻¹) but less sand (285 ± 79.2 g kg⁻¹) than the mound wall. As a result, the mounds of M. bellicosus accumulated clay of 2,874 ± 781 kg ha⁻¹ (corresponding to 2.52% of clay stock in the Ap1 horizon) along with an estimated clay turnover rate of 169 kg ha⁻¹ year⁻¹. These findings suggest a positive feedback effect from termite mound-building activity on soil particle dynamics in tropical savanna ecosystems: M. bellicosus preferentially use subsoil material for mound construction, resulting in relocation of illuvial clay in the subsoil to the land surface where clay eluviation from the surface soil and its illuviation in the subsoil are major soil-forming processes.     

Potential Phytoextraction and Phytostabilization of Perennial Peanut on Copper-Contaminated Vineyard Soils and Copper Mining Waste

This study sought to evaluate the potential of perennial peanut (Arachis pintoi) for copper phytoremediation in vineyard soils (Inceptisol and Mollisol) contaminated with copper and copper mining waste. Our results showed high phytomass production of perennial peanut in both vineyard soils. Macronutrient uptakes were not negatively affected by perennial peanut cultivated in all contaminated soils. Plants cultivated in Mollisol showed high copper concentrations in the roots and shoots of 475 and 52 mg kg⁻¹, respectively. Perennial peanut plants showed low translocation factor values for Cu, although these plants showed high bioaccumulation factor (BCF) for both vineyard soils, Inceptisol and Mollisol, with BCF values of 3.83 and 3.24, respectively, being characterized as a copper hyperaccumulator plant in these soils. Copper phytoextraction from Inceptisol soil was the highest for both roots and entire plant biomass, with more than 800 mg kg⁻¹ of copper in whole plant. The highest potential copper phytoextraction by perennial peanut was in Inceptisol soil with copper removal of 2,500 g ha⁻¹. Also, perennial peanut showed high potential for copper phytoremoval in copper mining waste and Mollisol with 1,700 and 1,500 g of copper per hectare, respectively. In addition, perennial peanuts characterized high potential for phytoextraction and phytostabilization of copper in vineyard soils and copper mining waste.     

Heterogeneity of the inland water–land palm ecotones (morichals) in the Orinoco lowlands,South America

We analyzed the distributional pattern of species and environmental gradients across inland water–land palm ecotones (morichals) of the Orinoco lowlands to increase comprehension of the nature of ecotone heterogeneity. A total of 91 species (53 genera and 45 families) with aboveground phytomass > 0.1 g dry mass were recorded. Detrented canonical correspondence analysis (DCCA) indicated that vegetation phytomass was related strongly to soil properties, including gradients of silt (14.5–4.7%), exchangeable Al (1.05–3.10 cmole kg⁻¹), K (0.03–0.30 cmole kg⁻¹), Na (0.01–0.08 cmole kg⁻¹), Mg (0.03–0.54 cmole kg⁻¹) concentrations, pH (3.7–5.0 units), and soil organic matter. Cluster analysis allowed the definition of four types of ecotones on the basis of hydrogeomorphic processes. The first major group (1) encompassing the sites from Venezuelan lowlands (i.e., 3V, 4V, 5V, 6V, and 7V) was related to less acidic soils with high organic matter content. The second group (II) from Eastern Colombian llanos (i.e., sites 8C, 9C, 11C, 12C, 13C, 14C, and 15C) was located in acidic soils (3.9–4.5 units) with high Mg concentration. The third group (III) (i.e., sites IV and 10C) was located in soils with high Na content, whereas the fourth group (IV) (i.e., site 2V) was characterized by species growing in soils with low exchangeable aluminum. The results evidenced the interactive role of valley constraint, landforms, hydrological regime, and soil feature in structuring the plant community. Biogeographic and floristic considerations were also taken into account to explain differences in species composition.     

Low Concentration of Copper Inhibits Colonization of Soil by the Arbuscular Mycorrhizal Fungus <Emphasis Type="Italic">Glomus intraradices</Emphasis> and Changes the Microbial Community Structure

Common agricultural practices result in accumulation of copper in agricultural soils worldwide. The effect of bioavailable copper ([Cu]_bio) on colonization of soil by the AM fungus Glomus intraradices and other soil microorganisms was investigated in microcosms containing copper-amended soil. To avoid indirect effects through the plant, copper was only added to root-free microcosm compartments. [Cu]_bio was measured using a Pseudomonas fluorescens biosensor strain. In the range of 0–1.5 μg g⁻¹ [Cu]_bio, a log–log linear relationship between added copper and [Cu]_bio was found. Microbial colonization of the root-free compartment was evaluated by whole-cell fatty acid analysis (WCFA) and amplified rDNA restriction analysis (ARDRA). The WCFA analysis showed that the AM fungus soil colonization was severely inhibited by Cu with a 50% reduction of mycorrhizal growth at 0.26 μg g⁻¹ [Cu]_bio. The growth of other main microbial groups was not significantly affected by copper. However, ARDRA analysis showed a very strong effect of copper on the bacterial community composition probably caused by an increased proportion of Cu-resistant bacteria. Our results suggest that problems with plant yield may arise when converting slightly copper-contaminated soils to land uses such as low-input and sustainable agriculture that are dependent on AM fungal symbiosis.     

Growth and physiological activity in <Emphasis Type="Italic">Larix kaempferi</Emphasis> seedlings inoculated with ectomycorrhizae as affected by soil acidification

To evaluate the effect of ectomycorrhizal colonization on growth and physiological activity of Larix kaempferi seedlings grown under soil acidification, we grew L. kaempferi seedlings with three types of ectomycorrhizae for 180 days in acidified brown forest soil derived from granite. The soil had been treated with an acid solution (0 (control), 10, 30, 60, and 90 mmol H⁺ kg⁻¹). The water-soluble concentrations of Ca, Mg, K, Al, and Mn increased with increasing amounts of H⁺ added to the soil. Ectomycorrhizal development significantly increased in soil treated with 10 and 30 mmol H⁺ kg⁻¹ but was significantly reduced in soil treated with 60 and 90 mmol H⁺ kg⁻¹. The concentrations of Al and Mn in needles or roots increased with increasing H⁺ added to the soil. The total N in seedlings significantly increased with increasing H⁺ in soil and colonization with ectomycorrhiza. The maximum net photosynthetic rate at light and CO₂ saturation (P _max) was greater in soil treated with 10 mmol H⁺ kg⁻¹ than in controls, and was less is soils treated with greater than with 30 mmol H⁺ kg⁻¹, especially with 60 and 90 mmol H⁺ kg⁻¹. However, colonization with ectomycorrhiza significantly reduced the concentration of Al and Mn in needles or roots and increased the values of P _max and total dry mass (TDM). The relative TDM of L. kaempferi seedlings was approximately 40% at a (BC, base cation)/Al ratio of 1.0. However, ectomycorrhizal seedlings had a 100–120% greater TDM at a BC/Al ratio of 1.0 than non-ectomycorrhizal seedlings, even though the acid treatment reduced their overall growth.     

Composition of organic matter in sandy relict and cultivated heathlands as examined by pyrolysis-field ionization MS

Unusually high SOC levels have been reported for sandy cropland soils in North-Western Europe. A potential link with their general heathland land-use history was investigated by comparing two soil pairs of relict heathland and cultivated former heathland in the Belgian sandy region. A sequential chemical fractionation yielded similar sizes in corresponding SOM fractions between the heathland and cropland soils (i.e. NaOCl resistant: 12.3–15.0 g C kg⁻¹ and NaOCl + HF resistant: 2.6–5.3 g C kg⁻¹). Higher amounts of clay sized N in the cropland plots can be attributed to N additions from mineral fertilizers and animal manure. Temperature resolved Pyrolysis Field Ionization Mass Spectroscopy analysis showed that the composition of both relict heathland and cultivated soils was surprisingly similar, in spite of over 60 years of intense cropland management. The mass spectra of SOM in both heathland-cropland soil pairs investigated was dominated by signals from lipids, alkylaromatics and sterols. The accumulation of this SOM rich in aliphatics was logically linked to the high input of lipids, long-chain aliphatics and sterols from heathland vegetation and the low soil pH and microbial activity. Based on the relatively high OC surface loadings of HF-extractable OM (13–44 mg C m⁻² Fe and 1.2–2.3 mg C m⁻² clay), direct organo-mineral bonds between OM and Fe-oxides or clay minerals seem to be only partly involved as a stabilization mechanism in these soils. The distinct bimodal shape of the thermograms indicates that OM-crosslinking could furthermore contribute substantially to SOM stabilization in these soils. This study therefore corroborates the previously proposed view that lipids may be bound in networks of alkylaromatics, the structural building blocks of OM macromolecules. We hypothesize that such binding is able to explain the measured retention of these OM components, even under several decades of cropland management.     

Stabilization of Soil Organic Matter: Association with Minerals or Chemical Recalcitrance?

Soil organic matter (OM) can be stabilized against decomposition by association with minerals, by its inherent recalcitrance and by occlusion in aggregates. However, the relative contribution of these factors to OM stabilization is yet unknown. We analyzed pool size and isotopic composition (¹⁴C, ¹³C) of mineral-protected and recalcitrant OM in 12 subsurface horizons from 10 acidic forest soils. The results were related to properties of the mineral phase and to OM composition as revealed by CPMAS ¹³C-NMR and CuO oxidation. Stable OM was defined as that material which survived treatment of soils with 6 wt% sodium hypochlorite (NaOCl). Mineral-protected OM was extracted by subsequent dissolution of minerals by 10% hydrofluoric acid (HF). Organic matter resistant against NaOCl and insoluble in HF was considered as recalcitrant OM. Hypochlorite removed primarily ¹⁴C-modern OM. Of the stable organic carbon (OC), amounting to 2.4–20.6 g kg⁻¹ soil, mineral dissolution released on average 73%. Poorly crystalline Fe and Al phases (Fe_o, Al_o) and crystalline Fe oxides (Fe_d−o) explained 86% of the variability of mineral-protected OC. Atomic C_p/(Fe+Al)_p ratios of 1.3–6.5 suggest that a portion of stable OM was associated with polymeric Fe and Al species. Recalcitrant OC (0.4–6.5 g kg⁻¹ soil) contributed on average 27% to stable OC and the amount was not correlated with any mineralogical property. Recalcitrant OC had lower Δ¹⁴C and δ¹³C values than mineral-protected OC and was mainly composed of aliphatic (56%) and O-alkyl (13%) C moieties. Lignin phenols were only present in small amounts in either mineral-protected or recalcitrant OM (mean 4.3 and 0.2 g kg⁻¹ OC). The results confirm that stabilization of OM by interaction with poorly crystalline minerals and polymeric metal species is the most important mechanism for preservation of OM in these acid subsoil horizons.     

Effects of AM colonization on “wild tobacco” plants grown in zinc-contaminated soil

This greenhouse study aimed to determine the effect of colonization by the arbuscular mycorrhizal (AM) fungus (Glomus intraradices Schenck & Smith) on the “wild” tobacco (Nicotiana rustica L. var. Azteca), under soil–zinc (Zn) conditions. Plants of N. rustica were grown in AM or non-AM inoculated substrate and subjected to four soil–[Zn] concentrations (0, 50, 100, and 250 mg Zn kg⁻¹ dry soil). The AM root colonization increased markedly from 14 to 81% with the increasing soil–[Zn] and the mycorrhizal structures were significantly more abundant at the highest soil–[Zn], suggesting that Zn may be involved directly or indirectly in AM root colonization. In addition, total Zn content or Zn concentrations in shoots and roots were shown to increase as soil–[Zn] increased in both AM and non-AM plants. As for the growth parameters studied, there were no significant differences between treatments despite the increase in Zn content or concentration. The AM roots subjected to the highest soil–[Zn] had a significant reduction by about 50% of total Zn content and Zn concentration compared to non-AM roots. Still, the relative extracted Zn percentage decreased dramatically as soil–[Zn] increased. Soil pH was significantly lower in non-AM than AM treatments at the highest soil–[Zn]. In summary, AM plants (particularly roots) showed lower Zn content and concentration than non-AM plants. In this regard, the AM fungi have a protective role for the host plant, thus playing an important role in soil-contaminant immobilization processes; and, therefore, are of value in phytoremediation, especially when heavy metals approach toxic levels in the soil.     

Increase in silicon concentrations and release from suspended solids and bottom sediments in Lake Kasumigaura, Japan

Increasing trends of dissolved Si measured by a colorimetric method and ICP (DSi_col and DSi_ICP, respectively) and total Si concentrations were detected at the center of Lake Kasumigaura during 1980–2006 (mean DSi_col concentration in the 1980s and 2000s was 1.3 and 4.0 mg l⁻¹, respectively). The observation of such trends is rare; therefore, the elucidation of the causes could be useful to understanding silicon dynamics in inland waters. Based on statistical analysis, we found that the increases in DSi_col and lithogenic Si accounted for most of the total Si increase (44 and 45%, respectively) and that biogenic Si, consisting of diatom frustules, also increased with them. Increases in DSi_ICP concentration were not detected near the mouth of the inflowing rivers, suggesting that the increase was caused by in-lake processes. Because the increase in suspended solids (SS) caused by sediment resuspension had been observed in the lake for the same period, we assumed that the Si release from SS containing diatom frustules contributed to the increase. The results of the laboratory experiments in which surface sediments were stirred in lake waters showed that the change in DSi_col concentration depended mainly on SS concentration, water temperature and the elapsed time of diatom frustules dissolution. An estimation of the released amount of Si from SS using the sediment resuspension model was (1.0–2.7) × 10⁹ g year⁻¹ in the 2000s, which was about 30–90% of the increase in the DSi_col outflow of 3.0 × 10⁹ g year⁻¹ from the 1980s to the 2000s. We also determined the Si release rates from bottom sediments through laboratory experiments. The Si amount released from bottom sediments in the lake in the 2000s was estimated to be 4.3 × 10⁹ g year⁻¹, which was about 2–4 times higher than the estimated Si amount released from SS. These findings suggest that the sediment resuspension might be the cause of the latest DSi increase.     

Plant and soil carbon accumulation following fire in Mediterranean woodlands in Spain

We measured plant and soil carbon (C) storage following canopy-replacing wildfires in woodlands of northeastern Spain that include an understory of shrubs dominated by Quercus coccifera and an overstory of Pinus halepensis trees. Established plant succession models predict rapid shrub recovery in these ecosystems, and we build on this model by contrasting shrub succession with long-term C storage in soils, trees, and the whole ecosystem. We used chronosequence and repeated sampling approaches to detect change over time. Aboveground plant C increased from <100 to ~3,000 g C m⁻² over 30 years following fire, which is substantially less than the 5,942 ± 487 g C m⁻² (mean ±1 standard error) in unburned sites. As expected, shrubs accumulated C rapidly, but the capacity for C storage in shrubs was <600 g C m⁻². Pines were the largest plant C pool in sites >20 years post fire, and accounted for all of the difference in plant C between older burned sites and unburned sites. In contrast, soil C was initially higher in burned sites (~4,500 g C m⁻²) than in unburned sites (3,264 ± 261 g C m⁻²) but burned site C declined to unburned levels within 10 years after fire. Combining these results with prior research suggests two states for C storage. When pine regeneration is successful, ~9,200 g C m⁻² accumulate in woodlands but when tree regeneration fails (due to microclimatic stress or short fire return intervals), ecosystem C storage of ~4,000 g C m⁻² will occur in the resulting shrublands.     

Nickel bioavailability in an ultramafic toposequence in the Vosges Mountains (France)

A serpentinised harzburgite outcrop located in the Vosges Mountains hosts a population of the Ni-hyperaccumulator Thlaspi caerulescens J. & C. Presl. A complete study was undertaken to relate the variability of Ni availability along the ultramafic toposequence to pedogenesis, soil mineralogy and functioning with X-Ray Diffraction, Transmission Electron Microscope observations coupled with Isotopic Exchange Kinetics and diethylenetriamine pentaacetic acid extraction of Ni. The soil profiles ranging from Dystric Cambisol to Hypermagnesic Hypereutric Cambisol were distributed unevenly along the toposequence probably due to geochemical variability of the bedrock and also complex quaternary erosion features. The richest soils were characterised by slight mineral weathering leading to Ni, Cr and Fe accumulation in the B horizons whereas the lowest saturated soils had very low-metal contents. Most soil minerals were inherited from the parent materials and there were only few traces of formation of secondary minerals. Primary minerals (e.g. serpentine, chlorite) contained low Ni concentrations (0.2%) whereas neoformed goethite, mainly in the B horizons of the richest soils, contained up to 4.3% Ni. Ni was probably sorbed onto amorphous Fe oxy−hydroxide particles (oxalate extraction) rather than incorporated within the crystal lattice of goethite. Ni availability in the B horizon of Hypereutric Cambisols was extremely high and so was the oxalate extractable Fe. At the toposequence level, there was a high level of Ni availability in the least weathered soils and a very low-availability level in the more intensively weathered soils (strongly acidic pH). Ni availability was unexpectedly positively correlated to pH and was controlled by soil mineralogy and Ni-bearing mineral phases. Ni hyperaccumulation (above 1,000 mg kg⁻¹) by native T. caerulescens was only reached in the Ni-rich soils as a consequence of the local edaphic factors. Ni uptake by T. caerulescens is strongly regulated by Ni availability in soils and therefore related to pedogenesis.     

Land use intensification affects soil microbial populations, functional diversity and related suppressiveness of cucumber Fusarium wilt in China’s Yangtze River Delta

The extent of soil microbial diversity in agricultural soils is critical to the maintenance of soil health and quality. The aim of this study was to investigate the influence of land use intensification on soil microbial diversity and thus the level of soil suppressiveness of cucumber Fusarium wilt. We examined three typical microbial populations, Bacillus spp., Pseudomonas spp. and Fuasarium oxysporum, and bacterial functional diversity in soils from three different land use types in China’s Yangtze River Delta, and related those to suppressiveness of cucumber Fusarium wilt. The land use types were a traditional rice wheat (or rape) rotation land, an open field vegetable land, and a polytunnel greenhouse vegetable land that had been transformed from the above two land use types since 1995. Results generated from the field soils showed similar counts for Bacillus spp. (log 5.87–6.01 CFU g⁻¹ dw soil) among the three soils of different land use types, significantly lower counts for Pseudomonas spp. (log 5.44 CFU g⁻¹ dw soil) in the polytunnel greenhouse vegetable land whilst significantly lower counts for Fusarium oxysporum (log 3.21 CFU g⁻¹ dw soil) in the traditional rice wheat (or rape) rotation land. A significant lower dehydrogenase activity (33.56 mg TPF kg⁻¹ dw day⁻¹) was observed in the polytunnel greenhouse vegetable land. Community level physiological profiles (CLPP) of the bacterial communities in soils showed that the average well color development (AWCD) and three functional diversity indices of Shannon index (H′), Simpson index (D) and McIntosh index (U) at 96 h incubation in BIOLOG Eco Micro plates were significantly lower in the polytunnel greenhouse vegetable land than in both the traditional rice wheat (or rape) rotation land and the open field vegetable land. A further greenhouse experiment with the air-dried and sieved soils displayed significantly lower plant growth parameters of 10-old cucumber seedlings as well as significantly lower biomass and total fresh fruit yield at the end of harvesting at day 70 in the polytunnel greenhouse vegetable soil sources. The percentages of Fusarium wilt plant death were greatly increased in the polytunnel greenhouse vegetable plants, irrespective of being inoculated with or without Fusarium oxysporum f. sp. cucumerinum. Our results could provide a better understanding of the effects of land use intensification on soil microbial population and functional diversity as well as the level of soil suppressiveness of cucumber Fusarium wilt.     

Stabilization of recent soil carbon in the humid tropics following land use changes: evidence from aggregate fractionation and stable isotope analyses

Quantitative knowledge of stabilization- and decomposition processes is necessary to understand, assess and predict effects of land use changes on storage and stability of soil organic carbon (soil C) in the tropics. Although it is well documented that different soil types have different soil C stocks, it is presently unknown how different soil types affect the stability of recently formed soil C. Here, we analyze the main controls of soil C storage in the top 0.1 m of soils developed on Tertiary sediments and soils developed on volcanic ashes. Using a combination of fractionation techniques with ¹³C isotopes analyses we had the opportunity to trace origin and stability of soil carbon in different aggregate fractions under pasture and secondary forest. Soil C contents were higher in volcanic ash soils (47–130 g kg⁻¹) than in sedimentary soils (19–50 g kg⁻¹). Mean residence time (MRT) of forest-derived carbon in pastures increased from 37 to 57 years with increasing silt + clay content in sedimentary soils, but was independent from soil properties in volcanic ash soils. MRTs of pasture-derived carbon in secondary forests were considerably shorter, especially in volcanic ash soils, where no pasture-derived carbon could be detected in any of the four studied secondary forests. The implications of these results are that the MRT of recently incorporated organic carbon depends on clay mineralogy and is longer in soils dominated by smectite than non-crystalline minerals. Our results show that the presence of soil C stabilization processes, does not necessarily mean that recent incorporated soil C will also be effectively stabilized.     

Effect of nitrate and glucose addition on denitrification and nitric oxide reductase (<Emphasis Type="Italic">cnorB</Emphasis>) gene abundance and mRNA levels in <Emphasis Type="Italic">Pseudomonas mandelii</Emphasis> inoculated into anoxic soil

The effect of glucose addition (0 and 500 μg C g⁻¹ soil) and nitrate (NO₃) addition (0, 10, 50 and 500 μg NO₃–N g⁻¹ soil) on nitric oxide reductase (cnorB) gene abundance and mRNA levels, and cumulative denitrification were quantified over 48 h in anoxic soils inoculated with Pseudomonas mandelii. Addition of glucose-C significantly increased cnorB _p (P. mandelii and related species) mRNA levels and abundance compared with soil with no glucose added, averaged over time and NO₃ addition treatments. Without glucose addition, cnorB _p mRNA levels were higher when 500 μg NO₃–N g⁻¹ soil was added compared with other NO₃ additions. In treatments with glucose added, addition of 50 μg NO₃–N g⁻¹ soil resulted in higher cnorB _p mRNA levels than soil without NO₃ but was not different from the 10 and 500 μg NO₃–N g⁻¹ treatments. cnorB _p abundance in soils without glucose addition was significantly higher in soils with 500 μg NO₃–N g⁻¹ soil compared to lower N-treated soils. Conversely, addition of 500 μg NO₃–N g⁻¹ soil resulted in lower cnorB _p abundance compared with soil without N-addition. Over 48 h, cumulative denitrification in soils with 500 μg glucose-C g⁻¹ soil, and 50 or 500 μg NO₃–N g⁻¹ was higher than all other treatments. There was a positive correlation between cnorB _p abundance and cumulative denitrification, but only in soils without glucose addition. Glucose-treated soils generally had higher cnorB _p abundance and mRNA levels than soils without glucose added, however response of cnorB _p abundance and mRNA levels to NO₃ supply depended on carbon availability.     

Seasonal changes in growth rate, carrageenan yield and lectin content in the red alga Kappaphycus alvarezii cultivated in Camranh Bay, Vietnam

The three color morphotypes of the red alga Kappaphycus alvarezii (brown, red and green) were cultured in Camranh Bay, Vietnam, using the fixed off-bottom monoline culture method to evaluate the growth rate, carrageenan yield, 3,6-anhydrogalactose, gel strength and lectin content. The brown morphotype was cultivated over a 12-month period; the red and green morphotypes were over a 6-month period. At the 60-day culture timepoint, the brown morphotype showed a higher growth rate (3.5–4.6% day⁻¹) from September to February, and lower growth rate (1.6–2.8% day⁻¹) from March to August. Significant (P < 0.05) differences in growth rate between culture months were found with the brown morphotype. High growth rates for the red (3.6–4.4% day⁻¹) and green (3.7–4.2% day⁻¹) morphotypes were obtained from September to February. The carrageenan yield, 3,6-anhydrogalactose and gel strength of the three morphotypes showed little variation, with the highest values obtained in November–December. At the 30-day sampling point, the brown morphotype had a higher lectin content (167–302 μg g⁻¹ dry alga) from August to March and a lower lectin content (23–104 μg g⁻¹ dry alga) from April to July. High lectin contents were recorded for the red (139–338 μg g⁻¹ dry alga) and green (124–259 μg g⁻¹ dry alga) morphotypes from September to February. This study shows that the different morphotypes of K. alvarezii can be grown in the tropical waters of the Camranh during the northeast monsoon, and part of the southwest monsoon, especially the brown morphotype, which can be grown during any season.