Genetic differentiation of coregonid fishes in pechora river

A population–genetic study of five coregonid fish species has been carried out using 30 enzyme loci. The species under study included whitefish, a natural hybrid of vendace and least cisco, inconnu, peled, and Arctic cisco. The investigation revealed a low intraspecific genetic differentiation of the abovementioned species from Lower Pechora River and Usa River, which is the main tributary in the Pechora River basin, where coregonid fishes migrate to spawn. Presumably, whitefish, vendace, and inconnu inhabiting the main channels of Lower Pechora and Usa rivers are represented here by introgressive populations of species formed by a mix of discrete evolutionary lineages originating from geographically separated Late Quaternary refugia. Some lineages of whitefish, vendace, and inconnu from the West Siberian periglacial lake came to Eastern Europe together with the last migration wave of Siberian species to the west, including peled, broad whitefish, and Arctic cisco, during the Middle Weichselian glaciation (60000–50000 years ago), while in the Eastern European Periglacial refugium (Lake Komi), local lineages of these species had survived. The periglacial Lake Komi has probably been located on the Pechora Plain since early Weichselian glaciation (90000–80000 years ago), and the studied whitefish specimens from Upper Pechora River are probably the purest descendants of the periglacial race of whitefish from Lake Komi. This assumption is supported by the data on the high level of genetic differentiation between the whitefish of Upper Pechora and Lower Pechora (D _N = 0.005), as well as by the pattern of allele distribution in some polymorphic loci. In our opinion, the ecologic and genetic differentiation of vendace in the Pechora River basin is also connected with the interaction between two evolutionary lineages that originated from independent periglacial refugia.     

Mitochondrial DNA genetic differentiation of the muksun Coregonus muksun (Pallas) and related Siberian species of Coregonus (Coredonidae, Salmoniformes)

Restriction enzyme analysis of the mitochondrial DNA (mtDNA) fragment encoding subunit 1 of the NADH dehydrogenase complex (ND-1) amplified via polymerase chain reaction (PCR) has been used to obtain data on genetic differentiation of muksun Coregonus muksun (Pallas) populations. Population polymorphism with respect to the restriction sites of 18 endonucleases has been described. It has been demonstrated that the muksun is genetically related to the pidschian C. pidschian (Gmelin), its sympatric species in Siberian waters. Analysis of the median network of mtDNA haplotypes has shown that haplotypes of muksun from various Siberian basins form a common group with haplotypes of pidschian of the Arctic Ocean basin, some frequent haplotypes been found in both forms. This raises the question as to the validity of the muksun as a species. Differences within this group of haplotypes are much smaller than those typical of species of the genus Coregonus. The possibility of a hybrid origin of the muksun from a pidschian-like ancestor and species of the cisco-peled (C. sardinella-C. peled) complex is discussed.     

Phylogenetic relationships among the subfamily Coregoninae as revealed by mitochondrial DNA restriction analysis

Mitochondria1 DNA (mtDNA) restriction analysis was used to assess phylogenetic patterns among 21 taxa of the subfamily Coregoninae. The genus Prosopium formed a very distinct group differing by 10% (sequence divergence estimate) from other species. Coregonus and Stenodus species were closely related, diverging by sequence divergence estimates of less than 5.6%. These species split into two major sister groups. One comprised all 'true whitefish' (subgenus Coregonus ) and four cisco species (subgenus Leucichrhys ). The most distant species within this assemblage was the Acadian whitefish ( C. huntsmani ). The other group included all other cisco species and also the Inconnu ( Stenodus leucichthys ). These results supported a polyphyletic origin of the ciscoes, and did not support Stenodus as a sister taxon of the genus Coregonus . The levels of sequence divergence observed suggested that most extant coregonines radiated during the Pleistocene.     

Mitochondrial DNA genetic differentiation of the muksun <Emphasis Type="Italic">Coregonus muksun</Emphasis> (Pallas) and related Siberian species of <Emphasis Type="Italic">Coregonus</Emphasis> (Coredonidae,Salmoniformes)

Restriction enzyme analysis of the mitochondrial DNA (mtDNA) fragment encoding subunit 1 of the NADH dehydrogenase complex (ND-1) amplified via polymerase chain reaction (PCR) has been used to obtain data on genetic differentiation of muksun Coregonus muksun (Pallas) populations. Population polymorphism with respect to the restriction sites of 18 endonucleases has been described. It has been demonstrated that the muksun is genetically related to the pidschian C. pidschian (Gmelin), its sympatric species in Siberian waters. Analysis of the median network of mtDNA haplotypes has shown that haplotypes of muksun from various Siberian basins form a common group with haplotypes of pidschian of the Arctic Ocean basin, some frequent haplotypes been found in both forms. This raises the question as to the validity of the muksun as a species. Differences within this group of haplotypes are much smaller than those typical of species of the genus Coregonus. The possibility of a hybrid origin of the muksun from a pidschian-like ancestor and species of the cisco-peled (C. sardinella-C. peled) complex is discussed.     

Genetic comparisons of New and Old World coregonid fishes*

The genetic relationships among New and Old World coregonid fishes were studied by electrophoresis. The genetic composition of 60 populations, representing perhaps nine commonly recognized species of Coregonus and Stenodus from Europe and North America was determined for 37 genetic loci. Six distinct genetic groups were evident. The first contained only populations of the inconnu, Stenodus leucichthys (Güldenstadt). The Nei genetic distance between Stenodus and Coregonus was 0.305, a relatively small value as compared to other salmonid inter-generic comparisons. The second genetic grouping contained the Arctic cisco, C. autumnalis (Pallas), the N. American lake cisco, C. artedii Lesueur, and the Irish pollan, C. autumnalis pollan Thompson. These three taxa appear to be conspecific on the basis of genetic distances. The third genetic grouping contained the European whitefish, C. lavaretus (L.), and the N. American lake whitefish, C. clupeaformis (Mitchill). European and lake whitefish may be conspecific. Lake whitefish from northwestern N. America were more closely related to European whitefish (genetic distance 0.038) than to lake whitefish from central N. America (genetic distance 0.098). The fourth group contained the broad whitefish, C. nasus (Pallas), which is perhaps more closely related to the European/lake whitefish groups than other coregonids. The fifth genetic grouping contained only the Asian endemic, C. peled (Gmelin), and the sixth contained the least cisco, C. sardinella Valenciennes, and vendace, C. albula (L.), which also appear to be conspecific. The widespread genetic groupings obtained for ciscoes indicate that they do not constitute a single closely related group within the genus Coregonus.     

Chromosome analysis in coregonid individuals in the interspecific hybridization zone

Artificial spawning (reproduction), a popular method in fisheries, has caused the unintentional hybridization between native European whitefish (Coregonus lavaretus) and introduced peled (Coregonus peled). The resultant hybrids are fertile and their morphological identification is impossible. The study shows the genetic characteristics of the hybrid coregonid fish specimens. Analyses of the number and morphology of chromosomes were based on conventional Giemsa staining. Nucleolar Organiser Regions (NOR) were analysed using CMA₃‐ and Ag‐NOR staining. Metaphases were also investigated by C‐banding methods. Hybrid specimens had a diploid chromosome number (2n) ranging from 76 to 80 and an arm chromosome number ranging from 96 to 100. NORs were observed on the subtelo‐acrocentric and submeta‐metacentric chromosomes. Results of the present study indicate a high level of chromosomal differentiation due to rearrangement taking place in the gene pool of whitefish/peled hybrids.     

Genetics, recruitment, and migration patterns of Arctic cisco (Coregonus autumnalis) in the Colville River, Alaska, and Mackenzie River, Canada

Arctic cisco Coregonus autumnalis have a complex anadromous life history, many aspects of which remain poorly understood. Some life history traits of Arctic cisco from the Colville River, Alaska, and Mackenzie River basin, Canada, were investigated using molecular genetics, harvest data, and otolith microchemistry. The Mackenzie hypothesis, which suggests that Arctic cisco found in Alaskan waters originate from the Mackenzie River system, was tested using 11 microsatellite loci and a single mitochondrial DNA gene. No genetic differentiation was found among sample collections from the Colville River and the Mackenzie River system using molecular markers (P > 0.19 in all comparisons). Model-based clustering methods also supported genetic admixture between sample collections from the Colville River and Mackenzie River basin. A reanalysis of recruitment patterns to Alaska, which included data from recent warm periods and suspected changes in atmospheric circulation patterns, still finds that recruitment is correlated to wind conditions. Otolith microchemistry (Sr/Ca ratios) confirmed repeated, annual movements of Arctic cisco between low-salinity habitats in winter and marine waters in summer.     

Sequence analysis of the mitochondrial DNA control region of ciscoes (genus Coregonus): taxonomic implications for the Great Lakes species flock

Sequence variation in the control region (D-loop) of the mitochondrial DNA (mtDNA) was examined to assess the genetic distinctiveness of the shortjaw cisco ( Coregonus zenithicus ). Individuals from within the Great Lakes Basin as well as inland lakes outside the basin were sampled. DNA fragments containing the entire D-loop were amplified by PCR from specimens of C. zenithicus and the related species C. artedi , C. hoyi , C. kiyi , and C. clupeaformis . DNA sequence analysis revealed high similarity within and among species and shared polymorphism for length variants. Based on this analysis, the shortjaw cisco is not genetically distinct from other cisco species.     

New host species and new distribution areas of <Emphasis Type="Italic">Salmincola lavaretus</Emphasis> (Copepoda: Lernaeopodidae): A parasite of coregonid fishes of Siberia

Data on the infestation of certain fish species by the parasitic copepod Salmincola lavaretus are presented for the first time. The infested fish species included Bauntovsky whitefish (Coregonus baunti), an endemic species from the Maloye and Bolshoye Kapylyushi lakes; Siberian whitefish (C. pidschian) and Siberian cisco (C. sardinella) from Bolshoye Kapylyushi Lake and Baunt Lake, which belong to the Tsypo-Tsypikan lake system (the Lena River basin, Transbaikalia); and Teletsky whitefish (C. lavaretus natio smitti) from Teletskoe Lake (the Ob River basin). Previously, S. lavaretus had been described as a parasite of Baikal omul (C. migratorius) and Baikal whitefish (C. baicalensis) from Baikal. The taxons of S. longimanus complex (S. longimanus, S. l. sibirica, S. svetlanovi, and S. lavaretus)—parasites of nasal fossae of grayling and coregonid fishes—were registered in the lakes of the Lake Baikal basin (Lake Baikal and Khovsgol Lake), the Lena River, the Yenisei and the Ob rivers (the largest rivers of the Arctic zoogeographic province), and the Kobdo River (the Western Mongolian province). It was assumed that S. longimanus complex is more widely distributed in the water bodies of the Arctic zoogeographic province of the Palearctic.     

Metazoan parasites of whitefish Coregonus clupeaformis (Mitchill) and cisco C. artedii Lesueur from Southern Indian Lake, Manitoba

Metazoan parasites of whitefish Coregonus clupeaformis and cisco C. artedii from Southern Indian Lake, Manitoba were studied to reveal: species composition, differences with host age, sex, and location and season of capture. Whitefish hosted 19 species, 18 of which were also in cisco with generally lower intensity levels. Parasites exhibited definite patterns of abundance with host age and season, the primary causes being dietary and behavioural. No differences in parasite abundance existed between host sexes. Ranking of cisco parasites was significantly different between two sampling sites while whitefish parasites did not differ. Whitefish and cisco from sites 40 miles (64 km) apart had significantly different abundances of Tetracotyle intermedia but not Triaenophorus crassus . An increase in the abundance of copepod-vectored cestodes with a concomitant decrease in abundance of amphipod-vectored parasites is predicted after flooding and diversion.     

Genetic differentiation among European whitefish ecotypes based on microsatellite data

The amount of genetic differentiation at DNA microsatellite loci in European whitefish (Coregonus lavaretus) was assessed among ecotypes, populations and run-timing types. The magnitude of genetic changes potentially caused by hatchery broodstock rearing were also compared with those observed in corresponding natural populations. A total of 35 populations were studied, including 33 Coregonus lavaretus populations and two samples of Coregonus peled. Five of the six whitefish ecotypes in Finland were represented within C. lavaretus populations. Genetic diversity among C. lavaretus populations proved to be high compared to two C. peled populations. The genetic D(A) distance between these two species was as high as 0.86. The genetic differentiation among ecotypes was generally low and thus gives support for the hypothesis of one native European whitefish species in Scandinavia. Among the ecotypes the northern, large sparsely-rakered, bottom-dwelling whitefish was most unique. Thus, observed genetic differences in quantitative traits have either developed independently of phylogenetic lineages, or have mixed and later changed according to environments and selection pressures. Overall genetic distances between the anadromous whitefish populations along the Finnish coast, especially in the Bothnian Bay area, were small. Populations of this area have been heavily influenced by human activities, and they also have the highest probability of mixing by natural means. In two cases, the Rivers Iijoki and Tornionjoki, statistically significant genetic differences could be observed between summer- and autumn-run spawning-time types. Wild populations had slightly higher allelic diversity than hatchery-reared populations of corresponding rivers. Although some reduction in genetic diversity during hatchery rearing is possible, it is an important aid in maintaining endangered populations.     

PHYLOGEOGRAPHIC STRUCTURE IN MITOCHONDRIAL DNA OF THE LAKE WHITEFISH (COREGONUS CLUPEAFORMIS) AND ITS RELATION TO PLEISTOCENE GLACIATIONS

Restriction-fragment length polymorphisms were employed to evaluate the phylogenetic relationships, the genetic diversity and the geographic structure in mitochondrial DNA (mtDNA) lineages of the lake whitefish, Coregonus clupeaformis. Thirteen restriction enzymes that produced 148 restriction fragments were used to assay mtDNAs of 525 specimens collected among 41 populations. The sampling covered the entire range of the species, from Alaska to Labrador. Four distinct phylogeographic assemblages were identified. The Beringian assemblage, confined to Yukon and Alaska, was phylogenetically distinct from other assemblages and exhibited the highest level of nucleotide diversity. The Acadian assemblage was confined to southeastern North America and composed of a unique mtDNA clade. The Atlantic assemblage was confined to southern Québec and the northeastern United States and was also observed among anadromous populations of northern Hudson Bay. This group was highly polymorphic and responsible for most of the mtDNA diversity observed outside Beringia. The Mississippian assemblage occupied most of the actual range of lake whitefish, from the Mackenzie delta to Labrador. Ninety-two percent of all whitefish of this proposed origin belonged to a single mtDNA haplotype. Overall, the diversity, the geographic structure and the times of divergence of mtDNA phylogenetic assemblages correlate with the Pleistocene glaciations classically assumed to have dramatically altered the genetic diversity of northern fishes in recent evolutionary times. Our results emphasize the dominant role of these catastrophic events in shaping the population genetic structure of lake whitefish.     

Postglacial recolonization patterns and genetic relationships among whitefish (Coregonus sp.) populations in Denmark, inferred from mitochondrial DNA and microsatellite markers

The genetic relationships among morphologically and geographically divergent populations of whitefish (genus: Coregonus ) from Denmark and the Baltic Sea region were studied by analysis of microsatellites and polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) analysis of mitochondrial DNA (mtDNA) segments. The endangered North Sea houting (classified as C. oxyrhynchus ) differs morphologically and physiologically from other Danish whitefish ( C. lavaretus ). However, limited divergence of North Sea houting was observed both at the level of mtDNA and microsatellites. The implications of these results for the conservation status of North Sea houting are discussed in the light of current definitions of evolutionary significant units. Both mtDNA and microsatellite data indicated that postglacial recolonization by C. lavaretus in Denmark was less likely to have taken place from the Baltic Sea. Instead, the data suggested a recent common origin of all Danish whitefish populations, including North Sea houting, probably by recolonization via the postglacial Elbe River system. Estimates of genetic differentiation among populations based on mtDNA and microsatellites were qualitatively different. In addition, for both classes of markers analyses of genetic differentiation yielded different results, depending on whether molecular distances between alleles or haplotypes were included.     

Morphology and mitochondrial DNA variation of the Siberian whitefish <Emphasis Type="Italic">Coregonus lavaretus pidschian</Emphasis> (Gmelin) in the upstream water bodies of the Ob and Yenisei Rivers

Combining morphological, ecological and genetic analyses, we compared patterns of diversification within and among populations of the southern Siberian whitefish species Coregonus lavaretus pidschian (Gmelin) to illuminate their evolutionary history. Using sequencing data from 1,930 bp of NADH dehydrogenase subunit 1 (ND1) mitochondrial DNA regions, we documented phylogeographic relationships among populations and developed a phylogeny of mtDNA haplotypes. We found significant differences in the perforated lateral-line scale numbers within and between some populations. Clear differences in the number of gill rakers on the first branchial arch were only exhibited between populations of C. l. pidschian and Coregonus lavaretus pravdinellus Dulkeit. Concordance between different morphological groups based on two meristic traits and mtDNA patterns was also tested.     

<Emphasis Type="Italic">Coregonus peled</Emphasis> (Gmelin) transplanted into Ulaagchny Khar lake (western mongolia) showed no evidence of hybridization with other introduced <Emphasis Type="Italic">Coregonus</Emphasis> species

Coregonus peled (Gmelin) (Teleostei: Salmoniformes: Coregonidae), which is considered an important object of coldwater aquaculture, had been successfully introduced into an enclosed Western Mongolian lake Ulaagchny Khar in the early 1980s. At the same time larvae of two other Coregonus species—Baikal omul C. migratorius (Georgi) and least cisco C. sardinella Valenciennes—had also been released into the lake. Baikal omul was then reported as a naturalized species. This might have caused interspecific hybridization and gene introgression. Identification of coregonids by morphology can be problematic, so to determine which species was dominant in the lake (we presumed it was peled) and if its gene pool was affected by other introduced Coregonus species we sampled 40 individuals and analyzed them by sequencing a fragment of mtDNA cyt b and by allozyme electrophoresis. The analysis showed that all the fish belonged to C. peled with no evidence of admixture from other coregonid species. Taking into account mass release of both species in 1980s, it is evident that naturalization of peled in the lake was much more successful than that of Baikal omul.     

A revision of coregonine fish distribution and abundance in eastern James-Hudson Bay

Synopsis Recent sampling programs conducted in the estuaries of the Eastmain and La Grande rivers (James Bay) and the Great Whale, Little Whale, Innuksuac and Povungnituk rivers (Hudson Bay) revealed patterns of coregonine fish distribution that differ from previous observations. The relative abundance of cisco, Coregonus artedii, and lake whitefish, C. clupeaformis, varied among rivers but did not reveal a latitudinal cline. Previous sampling programs underestimated the abundance of cisco in the Little Whale River. In addition, cisco was the third most abundant species captured in the Povungnituk River, situated 200 km to the north of the previously proposed northern limit at Innuksuac River. As such, the low abundances of cisco in the Great Whale and Innuksuac rivers cannot be attributed to a physiological inability to cope with a reduced growing season. Immature cisco were almost totally absent from the estuaries of the Hudson Bay rivers following spring breakup whereas immature lake whitefish made up 100% of the catch in the Innuksuac River at the same time of year. Species-specific migration patterns in Hudson Bay that differ from those observed in James Bay and the existence of unique juvenile overwintering rivers are 2 hypotheses proposed to explain the discontinuous age-class distribution of cisco and lake whitefish observed in Hudson Bay.Contribution to the program of GIROQ (Groupe Interuniversitaire de Recherche Océanographique du Québec).     

Siberian Roe Deer (<Emphasis Type="Italic">Capreolus pygargus</Emphasis> Pallas, 1771) in Ukraine: Analysis of the Mitochondrial and Nuclear DNA

A molecular-genetic analysis of the nucleotide sequences of the cytochrome b gene (1140 base pairs) of the mitochondrial DNA and 17 microsatellite loci of eight samples of roe deer from the Samara forest of Dnipropetrovsk oblast (Ukraine) was carried out. For comparison, 212 corresponding mtDNA sequences of the Siberian and European roe deer and data on the variability of microsatellite markers in 49 representatives of these species were included in the study. It was noted that all the analyzed mitochondrial sequences of individuals from the Samara forest are characteristic of the Siberian roe Capreolus pygargus Pallas, 1771. Four haplotypes were described, all of which belonged to the haplogroup typical for the western part of the range of C. pygargus. A fragment analysis of the microsatellite loci of nuclear DNA confirmed the identification of the investigated group with the Siberian species.     

Differentiation between Diphyllobothrium dendriticum and D. latum using isozymes,restriction profiles and ribosomal gene probes

Plerocercoids of Diphyllobothrium dendriticum from cisco (Coregonus artedii) and whitefish (C. clupeaformis) and of Diphyllobothrium latum from pike (Esox lucius) and walleye (Stizostedion vitreum) were collected at Quigly Lake, Manitoba. Adult tapeworms were obtained by experimental infection of hamsters (Mesocricetus auratus) and were used to verify species identity. Isozyme analysis showed no differences between adult and plerocercoid stages. The enzymes esterase and malate dehydrogenase differed between species. Comparison of DNA restriction fragment profiles showed species specific differences, as did Southern hybridization analysis using nematode ribosomal gene probes.