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1.
The connector or portal particle from double-stranded DNA bacteriophage φ29 has been crystallized. This structure, which connects the head of the virus with the tail and plays a central role in prohead assembly and DNA packaging and translocation, is formed by 12 subunits of the p10 protein and has a molecular weight of 430 kDa. The connector structure was proteolysed with endoproteinase Glu-C from Staphylococcus aureus V8, which removes 13 and 18 amino acids from the amino- and carboxy-terminal regions of the p10 protein, respectively. Two crystal forms were grown from drops containing an alcohol solution and paraffin oil. Crystals of form I are monoclinic, space group C2 with cell dimensions a=416.86 Å, b=227.62 Å, c=236.68 Å and β=96.3° and contain four connector particles per asymmetric unit. Crystals of form II are tetragonal, space group P42212 with cell dimensions a=b=170.2 Å, c=156.9 Å and contain half a particle per asymmetric unit. X-ray diffraction data from both native crystal forms have been collected to 6.0 and 3.2 Å respectively, using synchrotron radiation. Crystals of form II are likely to have the same packing arrangement as the two-dimensional crystals analyzed previously by electron microscopy.  相似文献   

2.
1-Methylimidazoline-2(3H)-thione (mimtH) and copper(I) thiocyanate in refluxing ethanolacetonitrile produce a colourless, diamagnetic complex, [Cu2(mimtH)4(SCN)2], which crystallises in an orthorhombic cell (a=8.0724(3), b=15.9545(6), c=21.3357(8) Å), space GROUP=Pbca, Z=4, final R=0.0319 from 2427 observed reflections F>4σc(F)). In the dimeric complex the copper(I) atoms are pseudo-tetrahedrally coordinated by pairs of, respectively, asymmetrically μ2-S bridging mimtH, terminal monodentate-S mimtH, (Cu---S=2.290(1) Å), and terminal monodentate-S thiocyanate, (Cu---S=2.332(1) Å). Each pair of ligands is trans-related to its partner across crystallographic centres of symmetry, consequently, each copper(I) atom has an identical S4 donor set with angles at the metal ranging from 95.9(1)° to 121.8(1)°. The centro-symmetric Cu2S2 core is rhomboid with Cu---S=2.377(1) and 2.457(1) Å, Cu---Sbr---Cu=72.6(1)° and Cu---Cu, Sbr---Sbr separation distances of 2.861(1) and 3.897(2) Å, respectively. Thermal decomposition of the complex in flowing air, (133–1000 °C), involves de-sulfurisation of mimtH and thiocyanate with concomitant production of copper(II) sulfide followed by oxidation to copper(II) oxide.  相似文献   

3.
Neuropsin (Mr25 032) is a serine protease expressed in the limbic system of mouse brain. It has been implicated in various neurological processes including formation of memory and may be important as a drug target in the treatment of epilepsy. The recombinant protein was produced using a baculovirus expression system and was purified. Two crystal forms were obtained by a hanging-drop vapor-diffusion method with polyethylene glycol. Preliminary X-ray crystallographic analysis revealed that crystal form I belongs to triclinic space groupP1 with unit cell dimensionsa= 97.16 Å,b= 97.12 Å,c= 46.75 Å and α = 99.17°, β = 99.77°, γ = 117.35°. Self-rotation function analysis of these data of form I indicates the position of a noncrystallographic threefold axis. There are six molecules in the crystallographic asymmetric unit. Crystal form II also belongs to triclinic space groupP1 but has unit cell dimensions ofa= 38.40 Å,b= 55.16 Å,c= 65.37 Å and α = 95.38°, β = 89.98°, γ = 110.46° with two molecules in the crystallographic asymmetric unit. Form II has a noncrystallographic twofold axis. Intensity data to 3.1 Å resolution for form I and to 2.2 Å resolution for form II have been collected.  相似文献   

4.
The synthesis, crystal structure determination and magnetic properties of a new five-coordinated unsymmetrical copper(II) dinuclear complex [Cu2Cl3(C7H6N2)5]Cl·4H2O are reported. The crystals are orthorhombic, space group Pnma with 4 formula units in a cell of dimensions: a = 19.506(3), b = 17.384(4), C = 11.940(2) Å. The structure was solved by direct methods. Least-squares refinement using 2138 independent reflections with I3σ(I) has led to a final value of the conventional R factor (on F) of 0.047 and Rw of 0.049. The complex cation consists of pairs of deformed trigonal-bipyramidal copper(II) centers which share an edge by two equatorial chloride ions. The equatorial coordination sites of the Cu(1) atom are occupied by three chloride ligands, while of the Cu(2) atom by two chloride and one benzimidazole ligands. The axial sites are occupied by the nitrogen atoms from four benzimidazole ligands. The Cu atoms and equatorial ligands are located on the symmetry plane. The Cu---Cu non-bonding distance in the complex is 3.386(1) Å; the two shorter bridging Cu(1)---Cl(1) and Cu(2)---Cl(1) distances are 2.402(2) and 2.424(2) Å; the two longer Cu(1)---Cl(2) and Cu(2)---Cl(2) are 2.620(2) and 2.551(2) Å. The Cu(1)---Cl(1)---Cu(2) and Cu(1)---Cl(2)---Cu(2) angles are 89.1(1) and 81.8(1)°. The structure is the first example of a bibridged binuclear complex with two non-equivalent Cu---Cl---Cu bridges. Comparison to other binuclear bis(μ-halide)-bridged copper complexes of similar structure has been made. Magnetic susceptibility measurements indicate ferromagnetic coupling of the copper(II) centers, the intramolecular exchange parameter, 2J, being 5.6 cm−1 and the intermolecular one J′ = −0.6 cm−1. The investigation of the electronic structure of the complex and the orbital interpretation of the magnetic coupling based on extended Hückel molecular orbital calculations are also presented.  相似文献   

5.
The 30-membered hexaaza macrocylic ligand, L (L=3,7,11,18,22,26-hexaazatricyclo-[26.2.2.213,16]tetratriaconta-1(31),13(33),14,16(34),28(32),29-hexaene), is capable of forming binuclear complexes with the divalent transition metal ions Ni, Cu and Zn. The two metal ions are bound by the two dipropylenetriamine units of the macrocycle. Extra coordination sites on the metal ions can be occupied by exogenous ligands such as acetate, chloride and thiocyanate. The crystal structure of one of the di-copper complexes is described: [LCu2(CH3CO2)2](ClO4)2·5H2O crystallizes in the monoclinic space group P21/c (No. 14), with a=9.369(2), b=17.644(3), c= 27.466(3) Å, β=92.90(1)°, U=4534.7 Å3 and Z=4. The Cu1···Cu2 separation is 8.40(3) Å. The access for potential exogenous bridging ligands, to the cavity between the copper ions, is somewhat restricted by the two phenyl units of the macrocycle which appear almost parallel in the structure. The redox potential of the couple L(Cu2+)2/L(Cu+)2, recorded by cyclic voltammetry for the chloride adduct, [LCu2Cl2]Cl2·5H2O, is −0.061 V versus SCE in DMF.  相似文献   

6.
A new monohelical OH bridged dinuclear complex [Zn2(dmqpy)(OOCCH3)2(μ-OH)][ClO4] · 0.5EtOH, where dmqpy is 6,6-dimethyl-2,2′:6′,2″:6″,2:6,2-quinquepyridine, has been synthesized and characterized by X-ray crystallography: monoclinic, space group P21/c, a=13.670(1), b=14.751(1), c=16.782(1) Å, β=96.59(1)°, U=3361.7(4) Å3, Z=4, R=0.0601. Two Zn(II) ions are in different coordination modes, one is five-coordinate with a N3O2 donor set and the other is N2O2 four-coordinate with a distorted tetrahedral geometry, and the zinc ions are bridged by a hydroxyl group. The presence of the OH bridge is further confirmed by electrospray mass and infrared spectroscopies. The solution properties of the complex were investigated by 1H NMR spectroscopy. The results of NMR indicate that the complex has higher symmetry in solution than in the solid state.  相似文献   

7.
We have obtained two new crystal forms of theAscarismajor sperm protein (MSP) that mediates amoeboid cell motility in nematode sperm. We obtained crystals with C2 symmetry from bacterially expressed α-MSP witha= 216.5 Å,b= 38.6 Å,c= 32.5 Å, γ = 93.1° and also crystals with P21symmetry from native β-MSP witha= 63.1 Å,b= 91.7 Å,c= 72.5 Å, γ = 91.3°. A full native data set has been collected for each crystal form using synchrotron radiation. Both crystal forms diffract to 2 Å and are suitable for high-resolution structural investigation.  相似文献   

8.
A cardenolide-hydrolysing β-D-glucosidase was isolated from young leaves of Digitalis lanata. Since this enzyme differs from the cardenolide glucohydrolase (CGH) described and characterised previously, it was termed cardenolide glucohydrolase II (CGH II). CGH II was detected in various Digitalis tissue cultures as well as in young leaves of D. lanata. The latter source was used as the starting material for the isolation and purification of CGH II. The specific enzyme activity reached about 15 pkat·mg–1 protein in buffered leaf extracts. Optimal CGH II activity was seen at around pH 6.0 and 50 °C. CGH II was purified about 600-fold by anion exchange chromatography, size exclusion chromatography and hydroxyapatite chromatography. The apparent molecular mass of CGH II was 65 kDa as determined by SDS-PAGE. CGH II exhibited a high substrate specificity towards cardenolide disaccharides, especially to those with a 1-4-β-linked glucose-digitoxose moiety such as glucoevatromonoside. The Km- and Vmax-values for this particular substrate were calculated to be 101 μM and 19.8 nkat·mg–1 protein, respectively.  相似文献   

9.
Cycloaddition reactions with α,β-unsaturated carbene complexes of the Fischer-type bearing the carbene carbon atom and the double bond incorporated in the same ring are described. Pentacarbonyl(2H-benzopyran-2- ylidene)chromium(0) complexes (2a-c) and pentacarbonyl(4-methoxy-3,3-dimethyl-2-oxacyclopentylidene)- chromium(0) (3) show a rather low reactivity towards 1,3-dipoles and 1,3-dienes. The reactions with diazomethane are regioselective but not chemoselective; compounds 2 and 3 show two sites of attack: the α,β carbon-carbon and the carbon-metal double bond. The crystal and molecular structures of 2a and 3 have been elucidated by single crystal X-ray analysis. Crystals of 2a are monoclinic, space group P21/c, a=7.614(3), b=14.033(3), c=12.766(3) Å, β=95.24°, V=1358.3(7) Å Z=4; crystals of 3 are triclinic, space group P , a=6.553(1), b=9.408(1), c=10.620(1) Å α=92.70(1), β=92.30(1), γ=92.12(1)°, V=653.0(1), Å3, Z=2. Final agreement indices for 2a and 3 are R=0.034 and 0.033, respectively. Vibrational properties of the Cr(CO)5 moiety were interpreted by FT-IR and FT-Raman spectroscopy. Electronic spectra and π electron distribution were interpreted by resonance Raman spectroscopy.  相似文献   

10.
Bis(pentamethylcyclopentadienyl)samarium bis- (tetrahydrofuranate), (C5Me5)2Sm(THF)2, reacts with 2,3,5,6-tetramethylphenol in toluene to yield (C5Me5)2Sm(OC6HMe4-2,3,5,6). The compound crystallizes in the space group P21/c with a = 8.725(3) Å, b=18.821(6) Å, c=18.461(6) Å, β= 111.17(2)°, V = 2827(2) Å3 and Dc=1.340 g cm−3 for Z = 4. Molecules of the aryloxide complex are monomeric and exhibit a bent metallocene structure with a nearly linear Sm---O---C(aryloxide) linkage: Sm---O = 2.13(1) Å, O---C = 1.29(2) Å, and Sm---O---C = 172.3(13)°. Reaction of the samarium complex with phenyllithium produces the previously- characterized species (C5Me5)2Sm(C6H5)(THF).  相似文献   

11.
The copper(II), nickel(II) and silver(I) complexes of the pentadentate 17-membered macrocycle 1, 12, 15-triaza-3, 4:9, 10-dibenzo-5,8-dithiacycloheptadecane (L1) have been prepared as perchlorates and characterized by X-ray crystallography. The N3S2 ligand uses all donor atoms for complexation. The copper coordination is square pyramidal with one sulfur atom in the axial site. Ni(II) displays an octahedral coordination by an interaction with a water molecule. The Ag(I) coordination is best described as a distorted pentagonal bipyramid. In [CuL1]2+ the 1, 4, 7-triazaheptane fragment of L1 is meridionally coordinated, but facially in [NiL1(H2O)]2+ and intermediate in [AgL1](ClO4). Crystal data for [CuL1](ClO4)2: monoclinic, space group P21/n, a = 13.153(8), b = 11.951(5), c = 17.880(8)Å, β = 110.29(4)°, Z = 4, R = 0.086 for 2732 independent reflections with I 2σ(I); [NiL1(H2O)](ClO4)2: monoclinic, P21/a, a = 10.771(2), b= 16.157(2), c = 15.286(2) Å, β =93.08(1)°, Z = 4, R = 0.085 for 1464 independent reflections with I 2σ(I); [AgL1](ClO4): monoclinic, P21/n, a = 12.708(9), b = 9.483(7), c = 19.569(13) Å, β= 103.95(6)°, Z = 4, R = 0.039 for 3600 independent reflections with I 2σ(I).  相似文献   

12.
Three isoamylases of Rhyzopertha dominica (termed RdA70, RdA79, and RdA90 according to their relative mobility in gel electrophoresis) were isolated by ammonium sulfate fractionation and hydrophobic interaction chromatography. RdA70 and RdA79 showed an optimal pH of 7.0, whereas for RdA90 the optimal pH was 6.5. The three isoamylases remained stable at 50 °C for 1 h, but at 60 °C, all lost 50% of their activity in 20 min and were completely inactivated in 1 h. RdA70 and RdA79 were inhibited by albumin extracts from wheat samples varying widely in amylase inhibitory activity; however, RdA90 was highly resistant to inhibition. β-Mercaptoethanol up to 30 mM increased the activity of the three isoamylases by 2.5-fold. The action pattern of the three isoamylases was typical of endoamylases; however, differences were observed on the hydrolytic efficiency rates measured as Vmax/Km ratio on starch, amylopectin, and amylose. The hydrolyzing action of RdA90 on starch and amylopectin (Vmax/Km = 90.4 ± 2.3 and 78.9 ± 6.6, respectively) was less efficient than that on amylose (Vmax/Km = 214 ± 23.2). RdA79 efficiently hydrolyzed both amylopectin and amylose (Vmax/Km = 260.6 ± 12.9 and 326.5 ± 9.4, respectively). RdA70 hydrolyzed starch and amylose at similar rates (Vmax/Km = 202.9 ± 5.5 and 215.9 ± 6.2, respectively), but amylopectin was a poor substrate (Vmax/Km = 124.2 ± 7.4). The overall results suggest that RdA70 and RdA79 appear to belong to a group of saccharifying isoamylases that breaks down long fragments of oligosaccharide chains produced by the hydrolytic action of RdA90. The simultaneous action of the three isoamylases on starch, aside from the high resistance of RdA90 to wheat amylase inhibitors, might allow R. dominica to feed and reproduce successfully on the wheat kernel.  相似文献   

13.
Two new homo- and hetero-dinuclear complexes, [Cu2L(im)](ClO4)34H2O (1) and [CuZnL(im)](ClO4)34H2O (2) (where Im=1H-1midazole and L = 3, 6, 9, 16, 19, 22-hexaaza-6, 19-bis(1H-imidazol-4-ylmethyl)tricycle[22, 2, 2, 211,14]triaconta-1, 11, 13, 24, 27, 29-hexaene) were synthesized and characterized as model compounds for the active site of copper(II)–zinc(II) superoxide dismutase (Cu2Zn2–SOD). X-ray crystal structure analysis revealed that the metal centers in both complexes exhibit distorted trigonal-bipyramid coordination geometry and the CuCu and CuZn distances are both 6.02 Å. Magnetic and ESR spectral measurements of 1 showed antiferromagnetic exchange interactions between the imidazolate-bridged Cu(II) ions. The ESR spectrum of 2 displays typical signals of mononuclear Cu(II) complex, demonstrating the formation of heterodinuclear complex 2 rather than a mixture of homodinuclear Cu(II)/Zn(II) complexes. pH-dependent ESR and UV–visible spectral measurements manifest that the imidazolate exists as a bridging ligand from pH 6 to 11 for both complexes. The IC50 values of 1.96 and 1.57 μM [per Cu(II) ion] for 1 and 2 suggest that they are good models for the Cu2Zn2–SOD.  相似文献   

14.
The preparation and X-ray structure of [Ag(9-EtGH-N7)2]NO3·H2O(9-EtGH=neutral 9-ethylguanine) is reported. The compound crystallizes in the triclinic system, space group P with a=7.063(6), b=7.153(3), c=11.306(10) Å, α=83.36(6), β=76.66(7), γ=81.44(6)°. The cation is centrosymmetric with Ag(I) coordinated via two N7 positions and Ag---N7 bond lengths of 2.11(1) Å. Applying 109Ag NMR spectroscopy, complex formation constants for both the 1:1 complex (log β1=0.6) and the title compound (log β2=1.6) in Me2SO have been determined.  相似文献   

15.
(Ph4P)4[Tl4Se16] was prepared hydrothermally in a sealed pyrex tube by the reaction of TlCl, K2Se4 and Ph4PCl in a 1:1:1 molar ratio at 110 °C for one day. The red crystals were obtained in 50% yield. Crystals of (Ph4P)4[Tl4Se16]: triclinic P (No. 2), Z=1, a=12.054(9), b=19.450(10), c=11.799(6) Å, α=104.63(4), β=98.86(6), γ=101.99(6)° and V=2555(3) Å3 at 23 °C, 2θmax=40.0°, μ=120.7 cm−1, Dcalc=2.23. The structure was solved by direct methods. Number of data collected: 5206. Number of unique data having Fo2>3σ(Fo2): 1723. Final R=0.075 and Rw=0.089. [Tl4Se16]4− consists of four, almost already linearly arranged, tetrahedral thallium centers which are coordinated by two chelating Se42−, two bridging Se22− and four bridging Se2− ligands. [Tl4Se16]4− sits on an inversion center and possesses a central {Tl2Se2}2+ planar core. The Tl(1)–Tl(1)′ distance in this core is 3.583(6) Å. These two thallium atoms are then each linked to two cyclic Tl(Se4) fragments via bridging Se22− and Se2− ligands forming Tl2Se(Se2) five-membered rings.  相似文献   

16.
The compound [Cu2(bipy)2(OH)2](C4O4)·5.5H2O, where bipy and C4O42− correspond to 2,2′-bipyridyl and squarate (dianion of 3,4-dihydroxy-3-cyclo- butene-1,3-dione) respectively, has been synthesized. Its magnetic properties have been investigated in the 2–300 K temperature range. The ground state is a spin-triplet state, with a singlet-triplet separation of 145 cm−1. The EPR powder spectrum confirms the nature of the ground state.Well-formed single crystals of the tetrahydrate, [Cu2(bipy)2(OH)2](C4O4)·4H2O, were grown from aqueous solutions and characterized by X-ray diffraction. The system is triclinic, space group P , with a = 9.022(2), b = 9.040(2), c = 8.409(2) Å, α = 103.51(2), β = 103.42(3), γ = 103.37(2)°, V = 642.9(3) Å3, Z = 1, Dx = 1.699 g cm−3, μ(Mo Kα) = 17.208 cm−1, F(000) = 336 and T= 295 K. A total of 2251 data were collected over the range 1θ25°; of these, 1993 (independent and with I3σ(I)) were used in the structural analysis. The final R and Rw residuals were 0.034 and 0.038 respectively. The structure contains squarato-O1, O3-bridged bis(μ-hydroxo)bis[(2,2′-bipyridyl)copper(II)] units forming zigzag one-dimensional chains. Each copper atom is in a square-pyramidal environment with the two nitrogen atoms of 2,2′-bipyridyl and the two oxygen atoms of the hydroxo groups building the basal plane and another oxygen atom of the squarate lying in the apical position.The magnetic properties are discussed in the light of spectral and structural data and compared with the reported ones for other bis(μ-hydroxo)bis[(2,2′-bipyridyl)copper(II)] complexes.  相似文献   

17.
An X-ray structural analysis of bis-2,2′,N,N′-bipyridyl ketone cobalt(III) nitrate dihydrate, CoC22H20N4O4+· NO3·2H2O,Mr=559.38 g/mol, P , a=8.862(2), b=16.195(3), c=8.772(2) Å, α=103.54(2), β=95.74(3), γ=105.07°, V=1164.4(4) Å3, Z=2, Dx=1.595 g/cm3, Mo Kα radiation (λ=0.71073 Å), μ=7.8 cm−1 and R=0.079, revealed a Co(III) cation in a slightly distorted octahedral environment. The structure reveals that the ligand di-2-pyridyl ketone (dpk) has undergone a hydration reaction across the ketone double bond and one of the hydrate oxygen atoms coordinated to the metal forming a tridentate chelate. This new Co(dpk-hydrate)2+ complex displays the least distorted geometry yet reported for either 1:1 or 1:2 (metal:ligand) complexes. A geometry optimization using the INDO model Hamiltonian as implemented in the program ZINDO was performed on the title complex with the Co3+ modeled as a singlet. The result of the computation corroborates the geometry of the title complex as that expected for Co3+.  相似文献   

18.
Intramolecular M(II)H–C interactions (M(II)=Cu(II), Pd(II)) involving a side chain alkyl group of planar d8 and d9 metal complexes of the N-alkyl (R) derivatives of N,N-bis(2-pyridylmethyl)amine with an N3Cl donor set were established by structural and spectroscopic methods. The methyl group from the branched alkyl group (R = 2,2-dimethylpropyl and 2-methylbutyl) axially interacts with the metal ion with the MC and MH distances of 3.056(3)–3.352(9) and 2.317(1)–2.606(1) Å, respectively, and the M–H–C angles of 122.4–162.3°. The Cu(II) complexes showing the interaction have a higher redox potential as compared with those without it, and the 1H NMR signals of the interacting methyl group in Pd(II) complexes shifted downfield relative to the ligand signals. Dependence of the downshift values on the dielectric constants of the solvents used indicated that the M(II)H–C interaction is mainly electrostatic in nature and may be regarded as a weak hydrogen bond. Implications for possible environmental effects of the leucine alkyl group at the type 1 Cu site of fungal laccase are also discussed.  相似文献   

19.
Crystal structures of cyclomaltohexaose (α-cyclodextrin) complexes with p-chlorophenol and p-cresol have been determined by single-crystal X-ray diffraction studies. The space group of the α-cyclodextrin–p-chlorophenol complex is P212121 with unit cell dimensions of a=15.299(3), b=24.795(5), c=13.447(5) Å, and that of the α-cyclodextrin–p-cresol complex is P21 with unit cell dimensions of a=7.927(7), b=13.568(7), c=24.54(1) Å, β=90.41(8)°. In spite of the similar structures of guest molecules, both complexes have different inclusion modes and packing structures.  相似文献   

20.
Pentaammineosmium(III) coordinates to both the N7 and C8 positions of purine rings. The compound 7-[9MeHyp(NH3)5Os]Cl3·H2O crystallizes in the orthorhombic space group Pnma (No. 62) with the unit cell parameters: a=11.542(2), b=6.9841(8), c=21.960(3) Å and Z=4. The compound 8-[1,3,7Me3Xan(NH3)5Os]Cl3·2H2O crystallizes in the monoclinic space group P21/c (No. 14) with the unit cell parameters: a=7.1228(X), b=14.613(1), c=19.667(1) Å, β=91.782(9)° and Z=4. The Os---C bond in the latter structure is 2.039(9) Å and the imidazolylidine ligand exerts a slight trans influence seen in the lengthening of the Os---Nax distance (2.172(8) Å) by about 0.05 Å relative to the average of the equatorial Os---Neq value of 2.123(8) Å. The spectroscopic, electrochemical and structural properties of these and additional N-bound purine complexes are compared with those of similar N7 and C8 ruthenium(III) species.  相似文献   

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