Global analysis of a model of plasmid-bearing,plasmid-free competition in a chemostat

A model of competition between plasmid-bearing and plasmid-free organisms in a chemostat was proposed in a paper of Stephanopoulis and Lapidus. The model was in the form of a system of nonlinear ordinary differential equations. Such models are relevant to commercial production by genetically altered organisms in continuous culture. The analysis there was local (using index arguments). This paper provides a mathematically rigorous analysis of the global asymptotic behavior of the governing equations in the case of uninhibited specific growth rate.Research supported by the National Council of Science, Republic of ChinaResearch supported by National Science Foundation Grant, DMS-9204490Research supported by the Natural Science and Engineering Council of Canada. This author's contribution was made while on research leave visiting the Department of Ecology and Evolutionary Biology at Princeton University. She would especially like to thank Simon Levin for his guidance as well as for providing an exceptional working environment     

Competition between plasmid-bearing and plasmid-free organisms in a chemostat with an inhibitor

A model of competition in the chemostat with an inhibitor is combined with a model of competition in the chemostat between plasmid-bearing and plasmid-free organism to produce a model that more closely approximates the way chemostat-like devices are used in biotechnology. The asymptotic behavior of the solutions of the resulting system of nonlinear differential equations is analyzed as a function of the relevant parameters. The techniques are those of dynamical systems although perturbation techniques are used when the parameter reflecting plasmid-loss is small.Research Supported by National Council of Science, Republic of ChinaResearch Supported by National Science Foundation Grant MCS 9204490     

Global analysis of a model of plasmid-bearing,plasmid-free competition in a chemostat with inhibitions

A model of competition between plasmid-bearing and plasmid-free organisms in a chemostat was proposed in a paper of Stephanopoulis and Lapidus. The model was in the form of a system of nonlinear ordinary differential equations. Such models were relevant to commercial production by genetically altered organisms in continuous culture. The analysis there was local. The rigorous global analysis was done in a paper of Hsu, Waltman and Wolkowicz in the case of the uninhibited specific growth rates. This paper provides a mathematically rigorous analysis of the global asymptotic behavior of the governing equations in the cases of combinations of inhibited and uninhibited specific growth rates.Research Supported by the National Council of Science, Republic of China     

Competition between plasmid-bearing and plasmid-free organisms in a chemostat with nutrient recycling and an inhibitor

The asymptotic behavior of solutions of a model for competition between plasmid-bearing and plasmid-free organisms in the chemostat with two distributed delays and an external inhibitor is considered. The model presents a refinement of the one considered by Lu and Hadeler [Z. Lu, K.P. Hadeler, Model of plasmid-bearing plasmid-free competition in the chemostat with nutrient recycling and an inhibitor, Math. Biosci. 167 (2000) p. 177]. The delays model the fact that the nutrient is partially recycled after the death of the biomass by bacterial decomposition. Furthermore, it is assumed that there is inter-specific competition between the plasmid-bearing and plasmid-free organisms as well as intra-specific competition within each population. Conditions for boundedness of solutions and existence of non-negative equilibrium are given. Analysis of the extinction of the organisms, including plasmid-bearing and plasmid-free organisms, and the uniform persistence of the system are also carried out. By constructing appropriate Liapunov-like functionals, some sufficient conditions of global attractivity to the extinction equilibria are obtained and the combined effects of the delays and the inhibitor are studied.     

Global dynamics of a chemostat competition model with distributed delay

 We study the global dynamics of n-species competition in a chemostat with distributed delay describing the time-lag involved in the conversion of nutrient to viable biomass. The delay phenomenon is modelled by the gamma distribution. The linear chain trick and a fluctuation lemma are applied to obtain the global limiting behavior of the model. When each population can survive if it is cultured alone, we prove that at most one competitor survives. The winner is the population that has the smallest delayed break-even concentration, provided that the orders of the delay kernels are large and the mean delays modified to include the washout rate (which we call the virtual mean delays) are bounded and close to each other, or the delay kernels modified to include the washout factor (which we call the virtual delay kernels) are close in L ¹-norm. Also, when the virtual mean delays are relatively small, it is shown that the predictions of the distributed delay model are identical with the predictions of the corresponding ODEs model without delay. However, since the delayed break-even concentrations are functions of the parameters appearing in the delay kernels, if the delays are sufficiently large, the prediction of which competitor survives, given by the ODEs model, can differ from that given by the delay model. Received: 9 August 1997 / Revised version: 2 July 1998     

Allelopathy of plasmid-bearing and plasmid-free organisms competing for two complementary resources in a chemostat

We consider a model of competition between plasmid-bearing and plasmid-free organisms for two complementary nutrients in a chemostat. We assume that the plasmid-bearing organism produces an allelopathic agent at the cost of its reproductive abilities which is lethal to plasmid-free organism. Our analysis leads to different thresholds in terms of the model parameters acting as conditions under which the organisms associated with the system cannot thrive even in the absence of competition. Local stability of the system is obtained in the absence of one or both the organisms. Also, global stability of the system is obtained in the presence of both the organisms. Computer simulations have been carried out to illustrate various analytical results.     

Population dynamics and competition in chemostat models with adaptive nutrient uptake

 The standard Monod model for microbial population dynamics in the chemostat is modified to take into consideration that cells can adapt to the change of nutrient concentration in the chemostat by switching between fast and slow nutrient uptake and growing modes with asymmetric thresholds for transition from one mode to another. This is a generalization of a modified Monod model which considers adaptation by transition between active growing and quiescent cells. Global analysis of the model equations is obtained using the theory of asymptotically autonomous systems. Transient oscillatory population density and hysteresis growth pattern observed experimentally, which do not occur for the standard Monod model, can be explained by such adaptive mechanism of the cells. Competition between two species that can switch between fast and slow nutrient uptake and growing modes is also considered. It is shown that generically there is no coexistence steady state, and only one steady state, corresponding to the survival of at most one species in the chemostat, is a local attractor. Numerical simulations reproduce the qualitative feature of some experimental data which show that the population density of the winning species approaches a positive steady state via transient oscillations while that of the losing species approaches the zero steady state monotonically. Received 4 August 1995; received in revised form 15 December 1995     

Allelopathy of plasmid-bearing and plasmid-free organisms competing for two complementary resources in a chemostat

We consider a model of competition between plasmid-bearing and plasmid-free organisms for two complementary nutrients in a chemostat. We assume that the plasmid-bearing organism produces an allelopathic agent at the cost of its reproductive abilities which is lethal to plasmid-free organism. Our analysis leads to different thresholds in terms of the model parameters acting as conditions under which the organisms associated with the system cannot thrive even in the absence of competition. Local stability of the system is obtained in the absence of one or both the organisms. Also, global stability of the system is obtained in the presence of both the organisms. Computer simulations have been carried out to illustrate various analytical results.     

Periodic solutions: a robust numerical method for an S-I-R model of epidemics

 We describe and analyze a numerical method for an S-I-R type epidemic model. We prove that it is unconditionally convergent and that solutions it produces share many qualitative and quantitative properties of the solution of the differential problem being approximated. Finally, we establish explicit sufficient conditions for the unique endemic steady state of the system to be unstable and we use our numerical algorithm to approximate the solution in such cases and discover that it can be periodic, just as suggested by the instability of the endemic steady state. Received: 1 September 1995 / Revised version: 30 April 1997     

Competing predators for a prey in a chemostat model with periodic nutrient input

A system of ordinary differential equations is used to model the interactions of n competing predators on a single prey population in a chemostat environment with a periodic nutrient input. In the case of one or no predators, criteria for the existence of periodic solutions are given. In the general case, conditions for all populations to persist are derived.Research is in part based on a Ph.D. thesis submitted to the Faculty of Graduate Studies, University of AlbertaResearch is partly supported by the Natural Sciences and Engineering Research Council of Canada, Grant No. NSERC A4823     

Persistent solutions for age-dependent pair-formation models

Conditions on the vital rates and the mating function are derived which imply existence or nonexistence of exponentially growing persistent age-distributions for age-dependent pair-formation models.     

The periodically forced Droop model for phytoplankton growth in a chemostat

 It is proved that the periodically forced Droop model for phytoplankton growth in a chemostat has precisely two dynamic regimes depending on a threshold condition involving the dilution rate. If the dilution rate is such that the sub-threshold condition holds, the phytoplankton population is washed out of the chemostat. If the super-threshold condition holds, then there is a unique periodic solution, having the same period as the forcing, characterized by the presence of the phytoplankton population, to which all solutions approach asymptotically. Furthermore, this result holds for a general class of models with monotone growth rate and monotone uptake rate, the latter possibly depending on the cell quota. Received 10 October 1995; received in revised form 26 March 1996     

Periodic solution of a chemostat model with Beddington-DeAnglis uptake function and impulsive state feedback control

In this paper, a chemostat model with Beddington-DeAnglis uptake function and impulsive state feedback control is considered. We obtain sufficient conditions of the global asymptotical stability of the system without impulsive state feedback control. We also obtain that the system with impulsive state feedback control has periodic solution of order one. Sufficient conditions for existence and stability of periodic solution of order one are given. In some cases, it is possible that the system exists periodic solution of order two. Our results show that the control measure is effective and reliable.     

Periodic solution of a chemostat model with Monod growth rate and impulsive state feedback control

In this paper, we develop a mathematical model concerning a chemostat with impulsive state feedback control to investigate the periodicity of bioprocess. By the existence criteria of periodic solution of a general planar impulsive autonomous system, the conditions under which the model has a periodic solution of order one are obtained. Furthermore, we estimate the position of the periodic solution of order one and discuss the existence of periodic solution of order two. The theoretical results and numerical simulations indicate that the chemostat system with impulsive state feedback control either tends to a stable state or has a periodic solution, which depends on the feedback state, the control parameter of the dilution rate and the initial concentrations of microorganisms and substrate.     

A generalized transport model for biased cell migration in an anisotropic environment

 A generalized transport model is derived for cell migration in an anisotropic environment and is applied to the specific cases of biased cell migration in a gradient of a stimulus (taxis; e.g., chemotaxis or haptotaxis) or along an axis of anisotropy (e.g., contact guidance). The model accounts for spatial or directional dependence of cell speed and cell turning behavior to predict a constitutive cell flux equation with drift velocity and diffusivity tensor (termed random motility tensor) that are explicit functions of the parameters of the underlying random walk model. This model provides the connection between cell locomotion and the resulting persistent random walk behavior to the observed cell migration on longer time scales, thus it provides a framework for interpreting cell migration data in terms of underlying motility mechanisms. Received: 8 April 1999     

Gender-based changes in cognition and emotionality in a new rat model of epilepsy

Summary. Epilepsy research relies heavily on animal models that mimic some, or all, of the clinical symptoms observed. We have previously described a new developmental rat model of epilepsy that demonstrates both behavioural seizures and changes in hippocampal morphology. In the current study we investigated whether these rats also show changes in cognitive performance as measured using the Morris water maze task, and emotionality as measured using the Elevated plus maze task. In the water maze, significant differences between male and female rats were found in several performance variables regardless of treatment. In addition, female but not male rats, treated neonatally with domoic acid had significant impairments in learning new platform locations in the water maze. In the elevated plus maze, a significant proportion of female rats spent more time in the open arm of the maze following prior exposure to the maze whereas this effect was not seen in male rats. We conclude that perinatal treatment with low doses of domoic acid results in significant gender-based changes in cognition and emotionality in adult rats.     

A simple SIS epidemic model with a backward bifurcation

It is shown that an SIS epidemic model with a non-constant contact rate may have multiple stable equilibria, a backward bifurcation and hysteresis. The consequences for disease control are discussed. The model is based on a Volterra integral equation and allows for a distributed infective period. The analysis includes both local and global stability of equilibria.     

Reactivity and oxidative potential of fructose and glucose in enkephalin-sugar model systems

Summary. The reactions of Leu- and Met-enkephalin (Tyr-Gly-Gly-Phe-Leu/Met) with fructose resulted in the parallel formation of Heyns compounds (N-peptidyl-d-mannosamine and -d-glucosamine) and sugar-peptide generated imidazolidinone diastereomers. Glucose showed higher level of reactivity than fructose with respect to the extent of glycated product formation. The presence of fructose in the incubation mixtures makes Met residue more susceptible to oxidation than glucose. Authors’ address: Dr. Štefica Horvat, Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, POB 180, 10002 Zagreb, Croatia     

Coevolutionary interactions between a haploid species and a diploid species

We investigate a general model describing coevolutionary interaction between a haploid population and a diploid population, each with two alleles at a single locus. Both species are allowed to evolve, with the fitness of the genotypes of each species assumed to depend linearly on the frequencies of the genotypes of the other species. We explore the resulting outcomes of these interactions, in particular determining the location of equilibria under various conditions. The coevolution here is much more complex than that between two haploid populations and allows for the possibility of two polymorphic equilibria. To allow for further analysis, we construct a semi-symmetric model. The variety of outcomes possible even in this second model provides support for the geographic mosaic theory of coevolution by suggesting the possibility of small local populations coevolving to very different outcomes, leading to a shifting geographic mosaic as neighboring populations interact with each other through migration.