斑马鱼在生命科学研究中的应用

利用模式生物进行研究是推动生命科学发展的主要手段之一.斑马鱼已成为继小鼠之后的又一个重要的模式脊椎动物.本文将重点介绍斑马鱼在学习记忆和疾病研究领域中的应用,以及我国推动斑马鱼相关研究的策略.     

以斑马鱼为模式动物研究器官的发育与再生

斑马鱼因其受精卵体外发育、胚胎透明、具有较强的再生能力以及适于大规模遗传筛选的优势, 成为研究脊椎动物器官发育与再生的新兴模式动物。通过数十年的探索, 科研工作者已经在斑马鱼中建立了一套成熟的研究方法, 并对斑马鱼胚胎发育早期的细胞命运决定和分化、组织器官的形态建成以及受损后的再生过程有了初步的认识。近年来, 随着遗传筛选技术的大规模开展和活体成像技术在斑马鱼中的深入应用, 许多在小鼠等模式动物中悬而未决的问题开始得到充分解答。随着研究的不断深化和技术的不断更新, 以斑马鱼为模式动物, 对脊椎动物器官发育与再生的研究将会更加深入, 相关的调控机制也会被逐步探明, 从而为临床相关疾病的防治提供富有价值的参考。文章通过对近年来发表的文章进行回顾, 总结了斑马鱼作为模式动物研究中枢神经系统、肝脏和胰腺、血液细胞和血管等重要器官早期发育过程及其调控机制的进展, 并阐述了以斑马鱼研究尾鳍、心脏、肝脏等器官再生的优势和初步发现。     

斑马鱼在新药发现中的应用

在过去20年里,斑马鱼已成为一种重要的模式脊椎动物,在发育、遗传、免疫、肿瘤和毒理等诸多研究领域中被广泛应用。近年来,斑马鱼作为活体模型越来越多地应用于某些生物学过程的药物筛选。通过斑马鱼初步筛选,在药物研发初期可确定化合物的生物学活性、毒性以及副作用等。最近的研究还发现,斑马鱼不仅用于新药筛选,还可用于药物结构的优化。本文重点介绍斑马鱼在新药发现中的应用。     

斑马鱼早期内胚层发育及其分子调控机制

斑马鱼已成为研究脊椎动物胚胎发育的理想模式生物,它具有体外受精、发育周期快、胚体透明等优点,此外其胚胎发育过程中的信号通路与哺乳动物有很高的同源性。该文阐述了斑马鱼早期内胚层发育的过程及其分子调控机制。     

化石人类脑进化研究与进展

化石人类脑演化主要是研究在人类进化过程中脑的变化过程,它是随着古神经学和古人类学的发展而发展起来的。古神经学(Paleoneurology),是神经学和占生物学的交叉学科,通过对化石脊椎动物和现牛动物的神经系统的比较,探索脊椎动物神经系统的演化过程。     

Tenascin-r基因在斑马鱼胚胎发育中时空表达规律

Tenascin-r(TNR)是一种脊椎动物细胞外基质糖蛋白,在不同的物种间具有高度保守性,主要表达于神经系统,通过调节基质粘附状态和基质间相互作用而促进细胞的迁移、增殖和分化.在小鼠等动物模型中,TNR在中枢神经系统的发育中起重要作用,能控制大脑活动、调节适应性行为.而在斑马鱼研究中,TNR仅在视神经的发育和修复中起作用,通过对TNR在斑马鱼胚胎发育时期时空表达规律的研究,可以为利用斑马鱼进一步研究TNR的功能建立一个平台.     

斑马鱼在再生医学研究中的应用及进展

组织器官的再生现象一直以来吸引着众多生物学家们的关注。再生能力在不同物种间差异很大, 与人及高等脊椎动物相比, 低等脊椎动物(如：斑马鱼)有着较高的再生能力。斑马鱼的鳍、心脏、视网膜、视神经、脊髓、肝脏及感觉毛细胞等都具有很强的再生能力。因此, 从斑马鱼再生过程的研究中将获得大量有用的信息, 促进对人类再生能力缺陷的认识, 进而推动再生医学的发展。文章就斑马鱼在心脏、神经系统、肝脏、鳍再生医学研究中的进展及应用做一综述。     

模式动物斑马鱼在组织屏障发育及功能研究中的进展

斑马鱼作为一种新型的模式动物,以其独特的优势,已经成为现代遗传学、发育生物学等研究的重要模式生物。与人类及其他高等脊椎动物相似,斑马鱼同样具有不同的组织屏障系统。近年来,此领域的研究者利用斑马鱼对血脑屏障等组织屏障的研究取得了重要的进展。这对揭示诸多生理屏障相关的人类疾病的发病机制,以及探讨通过调控组织屏障通透性来达到药物有效投递的可行性等研究具有重要的启示作用。本文将介绍近年来斑马鱼作为模式动物在血脑屏障、血-视网膜屏障、皮肤表皮屏障、肠黏膜上皮屏障等组织屏障发育和功能研究中的最新进展。     

斑马鱼外胚层早期发育及其某些调控机制

斑马鱼已经成为脊椎动物发育生物学研究的一种常用模式生物。它的体形较小,价格低廉,受精和发育都在体外,胚胎的通体透明,可以用活体观察基因突变后引起的表型变化。该阐明斑马鱼外胚层的发育及其某些调控机制。     

斑马鱼发育图式

斑马鱼由于其生育能力强,孕期短以及胚胎大而透明等特点,正在成为研究脊椎动物胚胎发育的理想模式;在本篇MCP的文章中,作者绘制出斑马鱼胚生长两个不同阶段（受精后72和120小时）高质量蛋白质图式,借此对发育过程蛋白质表迭如何变化进行了较准确的定量分析。他们采用了两种不同的方法,     

Adult neurogenesis and brain regeneration in zebrafish

Adult neurogenesis is a widespread trait of vertebrates; however, the degree of this ability and the underlying activity of the adult neural stem cells differ vastly among species. In contrast to mammals that have limited neurogenesis in their adult brains,zebrafish can constitutively produce new neurons along the whole rostrocaudal brain axis throughout its life.This feature of adult zebrafish brain relies on the presence of stem/progenitor cells that continuously proliferate,and the permissive environment of zebrafish brain for neurogenesis. Zebrafish has also an extensive regenerative capacity, which manifests itself in responding to central nervous system injuries by producing new neurons to replenish the lost ones. This ability makes zebrafish a useful model organism for understanding the stem cell activity in the brain, and the molecular programs required for central nervous system regeneration.In this review, we will discuss the current knowledge on the stem cell niches, the characteristics of the stem/progenitor cells, how they are regulated and their involvement in the regeneration response of the adult zebrafish brain. We will also emphasize the open questions that may help guide the future research.     

Zebrafish models for the functional genomics of neurogenetic disorders

In this review, we consider recent work using zebrafish to validate and study the functional consequences of mutations of human genes implicated in a broad range of degenerative and developmental disorders of the brain and spinal cord. Also we present technical considerations for those wishing to study their own genes of interest by taking advantage of this easily manipulated and clinically relevant model organism. Zebrafish permit mutational analyses of genetic function (gain or loss of function) and the rapid validation of human variants as pathological mutations. In particular, neural degeneration can be characterized at genetic, cellular, functional, and behavioral levels. Zebrafish have been used to knock down or express mutations in zebrafish homologs of human genes and to directly express human genes bearing mutations related to neurodegenerative disorders such as spinal muscular atrophy, ataxia, hereditary spastic paraplegia, amyotrophic lateral sclerosis (ALS), epilepsy, Huntington's disease, Parkinson's disease, fronto-temporal dementia, and Alzheimer's disease. More recently, we have been using zebrafish to validate mutations of synaptic genes discovered by large-scale genomic approaches in developmental disorders such as autism, schizophrenia, and non-syndromic mental retardation. Advances in zebrafish genetics such as multigenic analyses and chemical genetics now offer a unique potential for disease research. Thus, zebrafish hold much promise for advancing the functional genomics of human diseases, the understanding of the genetics and cell biology of degenerative and developmental disorders, and the discovery of therapeutics. This article is part of a Special Issue entitled Zebrafish Models of Neurological Diseases.     

Zebrafish Models of p53 Functions

Zebrafish models have significantly contributed to our understanding of vertebrate development and, more recently, human disease. The growing number of genetic tools available in zebrafish research has resulted in the identification of many genes involved in developmental and disease processes. In particular, studies in the zebrafish have clarified roles of the p53 tumor suppressor in the formation of specific tumor types, as well as roles of p53 family members during embryonic development. The zebrafish has also been instrumental in identifying novel mechanisms of p53 regulation and highlighting the importance of these mechanisms in vivo. This article will summarize how zebrafish models have been used to reveal numerous, important aspects of p53 function.The zebrafish, Danio rerio, is a small model organism that has long been used to study vertebrate development. Zebrafish embryos are optically clear and develop externally to the mother, facilitating the study of early developmental processes. In addition, zebrafish have increasingly been used in modeling human diseases, including a number of cancers. The availability of forward and reverse genetic tools in the zebrafish has resulted in the identification and characterization of many genes involved in development and disease. One gene that has been extensively studied is the p53 tumor suppressor gene, which is structurally and functionally conserved in the zebrafish. This article will discuss how studies in the zebrafish have increased our understanding of how p53 contributes to the formation of specific tumor types, resulted in the identification of novel mechanisms of p53 regulation, and showed how p53 and p53 family members are involved in embryonic development.     

斑马鱼生物钟研究进展

斑马鱼是生物钟研究领域中一种新兴的脊椎动物模型。文章总结了斑马鱼生物钟研究的一些进展, 以及利用斑马鱼研究生物钟的特点及优势。由于光照和温度作为重要的外部信号在斑马鱼生物钟调节中发挥重要作用, 文章主要就近期光和温度对斑马鱼钟基因及调节通路的研究进行了概述, 最后对斑马鱼生物钟研究的未来提出了展望。     

Zebrafish embryo, a tool to study tumor angiogenesis

Zebrafish (Danio rerio) represents a powerful model system in cancer research. Recent observations have shown the possibility to exploit zebrafish to investigate tumor angiogenesis, a pivotal step in cancer progression and target for anti-tumor therapies. Experimental models have been established in zebrafish adults, juveniles, and embryos, each one with its own advantages and disadvantages. Novel genetic tools and high resolution in vivo imaging techniques are also becoming available in zebrafish. It is anticipated that zebrafish will represent an important tool for chemical discovery and gene targeting in tumor angiogenesis. This review focuses on the recently developed tumor angiogenesis models in zebrafish, with particular emphasis to tumor engrafting in zebrafish embryos.     

The use of mature zebrafish (Danio rerio) as a model for human aging and disease

Zebrafish (Danio rerio) have been extensively utilized for understanding mechanisms of development. These studies have led to a wealth of resources including genetic tools, informational databases, and husbandry methods. In spite of all these resources, zebrafish have been underutilized for exploring pathophysiology of disease and the aging process. Zebrafish offer several advantages over mammalian models for these studies, including the ability to perform saturation mutagenesis and the capability to contain thousands of animals in a small space. In this review, we will discuss the use of mature zebrafish as an animal model and provide specific examples to support this novel use of zebrafish. Examples include demonstrating that clinical pathology can be performed in mature zebrafish and that age-associated changes in heat shock response can be observed in zebrafish. These highlights demonstrate the utility of zebrafish as a model for disease and aging.     

Zebrafish disease models in hematology: Highlights on biological and translational impact

Zebrafish (Danio rerio) has proven to be a versatile and reliable in vivo experimental model to study human hematopoiesis and hematological malignancies. As vertebrates, zebrafish has significant anatomical and biological similarities to humans, including the hematopoietic system. The powerful genome editing and genome-wide forward genetic screening tools have generated models that recapitulate human malignant hematopoietic pathologies in zebrafish and unravel cellular mechanisms involved in these diseases. Moreover, the use of zebrafish models in large-scale chemical screens has allowed the identification of new molecular targets and the design of alternative therapies. In this review we summarize the recent achievements in hematological research that highlight the power of the zebrafish model for discovery of new therapeutic molecules. We believe that the model is ready to give an immediate translational impact into the clinic.     

Antibiotic Toxicity and Absorption in Zebrafish Using Liquid Chromatography-Tandem Mass Spectrometry

Evaluation of drug toxicity is necessary for drug safety, but in vivo drug absorption is varied; therefore, a rapid, sensitive and reliable method for measuring drugs is needed. Zebrafish are acceptable drug toxicity screening models; we used these animals with a liquid chromatography-tandem mass spectrometry (LC-MS/MS) method in a multiple reaction monitoring mode to quantify drug uptake in zebrafish to better estimate drug toxicity. Analytes were recovered from zebrafish homogenate by collecting supernatant. Measurements were confirmed for drugs in the range of 10–1,000 ng/mL. Four antibiotics with different polarities were tested to explore any correlation of drug polarity, absorption, and toxicity. Zebrafish at 3 days post-fertilization (dpf) absorbed more drug than those at 6 h post-fertilization (hpf), and different developmental periods appeared to be differentially sensitive to the same compound. By observing abnormal embryos and LD₅₀ values, zebrafish embryos at 6 hpf were considered to be suitable for evaluating embryotoxicity. Also, larvae at 3 dpf were adapted to measure acute drug toxicity in adult mammals. Thus, we can exploit zebrafish to study drug toxicity and can reliably quantify drug uptake with LC-MS/MS. This approach will be helpful for future studies of toxicology in zebrafish.     

Zebrafish forebrain and temporal conditioning

The rise of zebrafish as a neuroscience research model organism, in conjunction with recent progress in single-cell resolution whole-brain imaging of larval zebrafish, opens a new window of opportunity for research on interval timing. In this article, we review zebrafish neuroanatomy and neuromodulatory systems, with particular focus on identifying homologies between the zebrafish forebrain and the mammalian forebrain. The neuroanatomical and neurochemical basis of interval timing is summarized with emphasis on the potential of using zebrafish to reveal the neural circuits for interval timing. The behavioural repertoire of larval zebrafish is reviewed and we demonstrate that larval zebrafish are capable of expecting a stimulus at a precise time point with minimal training. In conclusion, we propose that interval timing research using zebrafish and whole-brain calcium imaging at single-cell resolution will contribute to our understanding of how timing and time perception originate in the vertebrate brain from the level of single cells to circuits.     

Development of zebrafish epidermis

Zebrafish epidermal ionocytes are analogous to mammalian kidney cells in terms of expression and function of ion transporters. In this review, we summarize current findings about the development of the zebrafish epidermis and demonstrate how the zebrafish regulate stress acclimation through induction of cell differentiation. In addition, cellular homologies between zebrafish epidermal ionocytes and mammalian kidney cells are presented to show the potential of zebrafish epidermis as an in vivo model to study the development and function of mammalian cells.