A single origin of large colony size in allodapine bees suggests a threshold event among 50 million years of evolutionary tinkering

Evolutionary origins of highly eusocial organization involving morphological castes have been very rare, yet these origins have often led to enormous diversification and ecological success. This suggests that once an apparently severe selective barrier to highly eusocial behaviour is overcome, major new adaptive landscapes open up. One would therefore expect a discontinuity in patterns of evolutionary change across this barrier. However, we do not know if highly eusocial organization has evolved incrementally from less complex societies, or if it has involved some kind of evolutionary leap. Our study examines this issue using colony size data from 33 allodapine bee species, with a crown age of ca. 47 Mya. Our species cover all major allodapine clades, and include Exoneurella tridentata, the only known allodapine with morphologically discrete castes. Phylogenetic analyses indicate a strong effect of phylogeny on the evolution of maximum brood size, but the effect of phylogeny on maximum colony size (number of adults) depends on whether E. tridentata is excluded or included in analyses. We found no evidence of punctuational change in maximum colony or brood sizes over the phylogeny as a whole, but colony and brood sizes in E. tridentata fall well beyond variation among the other allodapines. Colony size in E. tridentata therefore represents an evolutionary outcome that does not fit within the kinds of incremental changes found in other allodapines. We propose that E. tridentata indicates the crossing of an important threshold, and this has entailed some very unusual ecological circumstances.     

High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae)

The Agaricales is the largest and most diverse order of mushroom-forming Basidiomycota, with over 100 natural groups recognized in recent Fungal Tree of Life studies. Most agarics are either saprotrophic or ectomycorrhizal fungi, but the family Hygrophoraceae is in part characterized by a unique and remarkable diversity of lichenized forms. The most familiar of these is the chlorolichen genus Lichenomphalia, whose phylogenetic position in the Agaricales has been established. Recent limited evidence suggested that Hygrophoraceae also contains cyanolichens in the genus Dictyonema, which indicates a remarkable concentration and diversity of lichen-formers in a single family of agarics. To demonstrate the relationships of lichen-formers to other fungi in the family, we assembled ribosomal sequences from 52 species representing recognized groups within the Hygrophoraceae, among them new sequences representing Acantholichen and most species and forms of Dictyonema. The molecular data were evaluated using parsimony, likelihood, Bayesian, and distance analyses, including coding of ambiguous regions by means of INAASE and ARC, all of which indicate that Dictyonema and Acantholichen form a monophyletic clade derived from the primarily bryophilous genus Arrhenia and sister to the enigmatic Athelia pyriformis, a species unrelated to the Atheliales for which we are proposing a new genus name Eonema. The chlorolichen genus Lichenomphalia may be polyphyletic. Fungi in the Dictyonema-Acantholichen clade are typically tropical, entirely lichenized, and associate with cyanobacterial photobionts. Our data indicate a transition from agaricoid-omphalinoid basidiomes observed in Arrhenia to stereoid-corticioid forms in Dictyonema, and also support a previous suggestion of a connection between loss of clamp connections and lichenization. The diverse basidiome and thallus morphologies and nutritional ecologies of these fungi indicate a remarkable evolutionary flexibility that appears to have developed in part as a consequence of symbiosis.     

The monophyletic origin of a remarkable sexual system in akentrogonid rhizocephalan parasites: A molecular and larval structural study

We use sequences from the nuclear ribosomal genes, 18S and 28S to analyze the phylogeny of the Rhizocephala Akentrogonida including two species, Clistosaccus paguri and Chthamalophilus delagei, that are critical for understanding rhizocephalan evolution but have not previously been part of a molecularly based study. In addition we use light and scanning electron microscopy to compare the cypris larvae of C. paguri, Sylon hippolytes and two species of the family Thompsoniidae, since this larval stage offers a suite of characters for analyzing the evolution of these otherwise highly reduced parasites. The Rhizocephala Akentrogonida form a monophyletic group nested within a paraphyletic “Kentrogonida”. C. paguri and S. hippolytes are sistergroups confirming the monophyly of the Clistosaccidae that was originally based on similarities in the cypris larvae. We find numerous LM and SEM level similarities between the two species, many of which appear to be correlated with their specialized sexual system, where male cyprids use an antennule to implant cells into the virgin female parasite. Some of these traits are also found in cyprids of the thompsoniid species. We conclude that the special cypris morphology and the implantation of males by antennular penetration was present in the stem species to the Thompsoniidae and the Clistosaccidae and emphasize the power of larval characters in rhizocephalan systematics. C. delagei is a sister group to Boschmaella balani and the two are nested deep within the Akentrogonida. This confirms the monophyly of the Chthamalophilidae and falsifies the theory that C. delagei should represent the most primitive extant rhizocephalan. Instead, chthamalophilid rhizocephalans represent some of the most highly advanced members of the parasitic barnacles.     

The analysis of three markers flanking GJB2 gene suggests a single origin of the most common 35delG mutation in the Moroccan population

In Caucasian populations a single mutation, 35delG, accounts for the majority of GJB2 gene mediated hearing loss, with carrier frequencies estimated between 2-4%, possibly resulting from a founder effect rather than from a mutational hot spot. In Moroccan population, the 35delG mutation accounts for 90.8% of all GJB2 mutated alleles in deaf patients with a carrier frequency of 2.65%. The aim of this study was to evaluate whether the 35delG mutation has derived from a single origin in the Moroccan population. We enrolled 30 unrelated deaf patients homozygous for the 35delG mutation and 165 unrelated control individuals negative for this mutation, and genotyped three microsatellite markers flanking the GJB2 region: D13S141, D13S175 and D13S143. Data analysis revealed that the 35delG mutation is associated with particular alleles of these markers, with significant linkage disequilibrium for the 125 and 105 nucleotide long alleles of D13S141 and D13S175, and that a single specific haplotype accounts for 68% of the chromosomes carrying the 35delG mutation. The estimate age of 35delG mutation is 135 generations or approximately 2700 years old. Like in other Mediterranean populations, our results suggest that in the Moroccan population the 35delG mutation has derived from a single origin in a common founder process.     

A new variant of the neodermatan-type spermiogenesis in a parasitic 'turbellarian', Notentera ivanovi (Platyhelminthes) and the origin of the Neodermata

Spermiogenesis is characterized by fully incorporated (in the testes of mature worms) or partially free (submature worms) axonemes in spermatids. Formation of free flagella correlates with tight arrangement of cells in the testes and small size of the zone of differentiation and vice versa . In both cases the axonemes elongate within the growing shaft, so that the organization of the resulting spermatids is different only with regard to the distal end. In late spermatids, the nucleus occupies the proximal half, the two mitochondria and the axonemes directed distally lie in the distal half. After detachment of the spermatid, a migration of the nucleus takes place. In the resulting mature sperm, the proximal (anterior) half is occupied by the mitochondria and axonemes the basal bodies of which lie at the anterior end of the spermatozoon; the nucleus occupies the distal (posterior) half. Because of the distal orientation of the axonemes and a peculiar mode of the migration of the nucleus, the spermiogenesis of Notentera should be classified as a new variant of the type characteristic of the Neodermata (parasitic Platyhelminthes). Based on the analysis of the available morphological and other relevant data it is argued (i) that a high-ranked taxon, the Fecampiida, should be established within the Neoophora to include Notentera and the closely related Fecampiidae and (ii) that all the Platyhelminthes with neodermatan-type spermiogenesis form a monophyletic taxon, the Revertospermata, which includes the sister groups Fecampiida and Mediofusata.     

Economic weights of production and functional traits for Merinolandschaf, Romney, Romanov and Sumavska sheep in the Czech Republic

Economic weights of production and functional traits were estimated for the dual-purpose sheep breeds Romney (RY), Merinolandschaf (ML), Romanov (RV) and Sumavska (SA). A bio-economic computer model simulating the profit function for production systems with one lambing per year was used for the calculations. First, marginal economic values were calculated which were defined as partial derivatives of the profit function with respect to the average level for each trait. Applying gene-flow methodology, absolute and relative economic weights for direct and maternal components of the traits were then estimated for pure-bred production systems and systems which included partial terminal cross-breeding. The following traits were evaluated: birth weight, daily gain till weaning and during rearing, mature weight, dressing percentage, fleece weight, conception rate of ewe lambs and ewes, litter size at lambing (total number of lambs born per ewe lambing), survival rate of lambs at birth and till weaning and productive lifetime of ewes. Standardized economic weights were calculated as the product of the economic weight and the genetic standard deviation of each trait or trait component. The total economic importance was defined as the sum of the absolute (not taking into account the sign) standardized economic weights over all traits and trait components, and relative economic weights were then computed as the standardized economic weights expressed as percentages of total economic importance. The direct components of survival rate at birth and till weaning, the direct component of daily gain till weaning and litter size had the highest relative economic weights (greater than 10%) in pure-bred systems in all four breeds. In ML and RV, the maternal component of lamb survival rate till weaning also had a relative economic weight exceeding 10%. In systems with partial terminal cross-breeding for all four breeds, relative economic weights of maternal traits and trait components were slightly larger than in pure-bred production systems, particularly for litter size. Based upon comparison of relative economic weights of traits among breeds, separate breeding goals for RY and RV are recommended, whereas a common breeding goal is deemed appropriate for ML and SA.     

Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses

The evolutionary history of closely related organisms can prove sometimes difficult to infer. Hybridization and incomplete lineage sorting are the main concerns; however, genome rearrangements can also influence the outcome of analyses based on nuclear sequences. In the present study, DNA sequences from 12 nuclear genes, for which the approximate chromosomal locations are known, have been used to estimate the evolutionary history of two forms of Drosophila americana ( Drosophila   americana americana and Drosophila americana texana ) and Drosophila novamexicana ( virilis group of species). The phylogenetic analysis of the combined data set resulted in a phylogeny showing reciprocal monophyly for D. novamexicana and D. americana . Single gene analyses, however, resulted in incongruent phylogenies influenced by chromosomal rearrangements. Genetic differentiation estimates indicated a significant differentiation between the two species for all genes. Within D. americana , however, there is no evidence for differentiation between the chromosomal forms except at genes located near the X/4 fusion and Xc inversion breakpoint. Thus, the specific status of D. americana and D. novamexicana is confirmed, but there is no overall evidence for genetic differentiation between D. a. americana and D. a. texana , not supporting a subspecific status. Based on levels of allele and nucleotide diversity found in the strains used, it is proposed that D. americana has had a stable, large population during the recent past while D. novamexicana has speciated from a peripheral southwestern population having had an ancestral small effective population size. The influence of chromosomal rearrangements in single gene analyses is also examined.     

Distinctive biochemistry in the trypanosome mitochondrial intermembrane space suggests a model for stepwise evolution of the MIA pathway for import of cysteine-rich proteins

Mia40-dependent disulphide bond exchange is used by animals, yeast, and probably plants for import of small, cysteine-rich proteins into the mitochondrial intermembrane space (IMS). During import, electrons are transferred from the imported substrate to Mia40 then, via the sulphydryl oxidase Erv1, into the respiratory chain. Curiously, however, there are protozoa which contain substrates for Mia40-dependent import, but lack Mia40. There are also organisms where Erv1 is present in the absence of respiratory chain components. In accommodating these and other relevant observations pertaining to mitochondrial cell biology, we hypothesise that the ancestral IMS import pathway for disulphide-bonded proteins required only Erv1 (but not Mia40) and identify parasites in which O(2) is the likely physiological oxidant for Erv1.     

Phylogeny of the Bangia flora of New Zealand suggests a southern origin for Porphyra and Bangia (Bangiales, Rhodophyta)

Analysis of nuclear small subunit ribosomal RNA gene (18S rDNA) sequence data from 123 samples of the red algal genus Bangia from mainland New Zealand has revealed diversity exceeding that reported for the genus from any other region in the world. Our study resolves two New Zealand Bangia taxa basal to the order Bangiales, and five clades of Bangia, four of which include New Zealand members. The basal taxa are separated from each other by 139 bp and differ from all other Bangia taxa in the New Zealand region by 103-163 bp over approximately 1750 bp 18S rDNA sequence data. Our results reveal a Bangia flora of previously unsuspected richness, and show that the simple morphology of these organisms obscures significant levels of genetic diversity. The presence of high diversity and retention of basal taxa in New Zealand Bangia raises the prospect that the southern hemisphere, and particularly eastern Gondwana, is not only a centre of diversity, but a centre of origin for the modern Bangiales.     

Chloroplast DNA phylogeography suggests a West African centre of origin for the baobab, Adansonia digitata L. (Bombacoideae, Malvaceae)

The African baobab ( Adansonia digitata L.) is an emblematic, culturally important, and physically huge tropical tree species whose natural geographical distribution comprises most of tropical Africa, but also small patches of southern Arabia, and several Atlantic and Indian Ocean islands surrounding the African continent, notably including Madagascar. We analysed the polymerase chain reaction–restriction fragment length polymorphism of five chloroplast DNA fragments obtained from 344 individuals of A. digitata collected from 74 populations covering the entire extant distribution range of the species. Our goal was to reconstruct the phylogeographical history of the species and, if possible, to identify its centre of origin, which has been a subject of controversy for many decades. We identified five haplotypes whose distribution is clearly geographically structured. Using several species of Adansonia and of closely related genera as outgroups, the haplotypes showed a clear phylogeographical pattern of three groups. Two are phylogenetically related to the outgroup taxa, and are distributed in West Africa. The third group is substantially more differentiated genetically from outgroup species, and it corresponds to southern and eastern Africa, Arabia and the Indian Ocean islands, including Madagascar. According to our results, the tetraploid A. digitata , or its diploid progenitor, probably originated in West Africa and migrated subsequently throughout the tropical parts of that continent, and beyond, by natural and human-mediated terrestrial and overseas dispersal.     

Dispersal and diversity in the earliest North American sauropodomorph dinosaurs, with a description of a new taxon

Sauropodomorph dinosaurs originated in the Southern Hemisphere in the Middle or Late Triassic and are commonly portrayed as spreading rapidly to all corners of Pangaea as part of a uniform Late Triassic to Early Jurassic cosmopolitan dinosaur fauna. Under this model, dispersal allegedly inhibited dinosaurian diversification, while vicariance and local extinction enhanced it. However, apomorphy-based analyses of the known fossil record indicate that sauropodomorphs were absent in North America until the Early Jurassic, reframing the temporal context of their arrival. We describe a new taxon from the Kayenta Formation of Arizona that comprises the third diagnosable sauropodomorph from the Early Jurassic of North America. We analysed its relationships to test whether sauropodomorphs reached North America in a single sweepstakes event or in separate dispersals. Our finding of separate arrivals by all three taxa suggests dispersal as a chief factor in dinosaurian diversification during at least the early Mesozoic. It questions whether a 'cosmopolitan' dinosaur fauna ever existed, and corroborates that vicariance, extinction and dispersal did not operate uniformly in time or under uniform conditions during the Mesozoic. Their relative importance is best measured in narrow time slices and circumscribed geographical regions.     

The diversity and evolution of recruitment behaviour in ants,with a discussion of the usefulness of parsimony criteria in the reconstruction of evolutionary histories

Summary Three alternative hypotheses about the evolution of recruitment behaviour in ants, based on accounts in the literature, are compared by means of a cladistic analysis. The three hypotheses are the following:Hypothesis 1. Increasingly efficient recruitment behaviours exhibited by different ant species have been shaped by or are correlated with ant phylogeny.Hypothesis 2. Increasingly efficient recruitment behaviours represent necessary evolutionary steps independently followed during the evolution of different ant clades.Hypothesis 3. Differently efficient recruitment behaviours have been selected in a convergent way among different species by similar population/environmental constraints.In a first stage of the analysis, these hypotheses have been compared in terms of parsimony (i.e. in terms of tree length = TL) of alternative cladograms based on recruitment behaviour only. The analysis gave the following results: Hypothesis 1, TL = 4; Hypothesis 2, TL = 18; Hypothesis 3, TL = 11. At least in terms of parsimony, hence, Hypothesis 1 appears to be the best. This hypothesis, however, cannot be retained for its total lack of congruence with current views on ant phylogeny. Among the remaining two hypotheses, Hypothesis 3 is again much (ca. 40%) more parsimonious than Hypothesis 2, but the retention index for recruitment behaviour on the relative cladogram is 0.2 as compared with 0.7 for Hypothesis 2. Practically, this implies biologically very implausible behavioural evolution indicated by very improbable ancestors for the species included in the analysis. In the case of recruitment evolution the biological credibility of each hypothesis is inversely proportional to its parsimony.The three hypotheses on the evolution of recruitment behaviour are compared again taking into account the morphological and behavioural correlates of recruitment. The results confirm those obtained by simple cladistic analysis of behaviour alone, namely that an obligatory (i. e. neither reversible nor random) increase in recruitment efficiency has been repeatedly selected within different ant clades. Inclusion of the recruitment correlates allows, in addition, a more precise formulation of the implications of each hypothesis and a tentative test of two other alternatives deduced from the literature. Most papers dealing with recruitment assume this behaviour to be controlled by a single gland, while at least two experimental analyses show that more than one gland is likely to be involved as behavioural releaser. A cladistic approach allowed testing of the following two adaptational hypotheses: A) Synergic behavioural control by several glands, allowing shift of the dominant role from one gland to another. B) Single gland control, making improbable the replacement of one gland by another that performs the same function. The results of the analysis appear to favour alternative A slightly, though neither alternative results in implausible evolutionary paths.It is stressed that parsimony remains the sole decisional criterion when no other criteria are available but it can by no way be preferred to the slightest trace of biological common sense.     

The relationship between organ weights and body weights, facial dimensions, and dental dimensions in a population of olive baboons (Papio cynocephalus anubis)

Questions concerned with the relationship between organ weights and body weight on an intraspecific level are best answered by using a sample of animals collected in the wild from a single locale during a single season. The organ weights and body weights for this study were obtained from the necropsy reports prepared in the field (Athi Plain, Kenya) by H. C. McGill, Jr. on 36 adult animals (18 males and 18 females). Dental and facial measurements were taken by M.I. Siegel. In order to avoid erroneous results produced by statistical treatment of combined sex samples of sexually dimorphic species, data on the sexes were analyzed separately. Means and standard deviations are reported for selected organ weights and body dimensions (heart, lung, liver, spleen, kidney, adrenal, brain, and pancreas weights, crown–rump length, crown–heel length, head circumference, chest circumference, and body weight). All of the above measures were significantly (p<0.05) different between the sexes. Logarithms of these measures were significantly correlated with the logarithm of body weight in males for heart, lung, liver, spleen, kidney, and adrenal weights, crown–heel length, and head and chest circumference, and in females for crown–heel length, heart, liver, and kidney weights. Partial correlational analysis, removing the effects of body size (weight), showed mostly negative correlational relationships between dental and visceral dimensions. Most of the correlations between facial and visceral dimensions were negative. Allometric equations were calculated for the dental, facial, and visceral dimensions versus body weight, and are compared with prior published results.     

Colonization and extinction of land planarians (Platyhelminthes,Tricladida) in a Brazilian Atlantic Forest regrowth remnant

Long-term assessments of species assemblages are valuable tools for detecting species ecological preferences and their dispersal tracks, as well as for assessing the possible effects of alien species on native communities. Here we report a 50-year-long study on population dynamics of the four species of land flatworms (Platyhelminthes, Tricladida, Terricola) that have colonized or become extinct in a 70-year-old Atlantic Forest regrowth remnant through the period 1955–2006. On the one hand, the two initially most abundant species, which are native to the study site, Notogynaphallia ernesti and Geoplana multicolor have declined over decades and at present do not exist in the forest remnant. The extinction of these species is most likely related with their preference for open vegetation areas, which presently do not exist in the forest remnant. On the other hand, the neotropical Geoplaninae 1 and the exotic Endeavouria septemlineata were detected in the forest only very recently. The long-term study allowed us to conclude that Geoplaninae 1 was introduced into the study area, although it is only known from the study site. Endeavouria septemlineata, an active predator of the exotic giant African snail, is originally known from Hawaii. This land flatworm species was observed repeatedly in Brazilian anthropogenic areas, and this is the first report of the species in relatively well preserved native forest, which may be evidence of an ongoing adaptive process. Monitoring of its geographic spread and its ecological role would be a good practice for preventing potential damaging effects, since it also feeds on native mollusk fauna, as we observed in lab conditions. Júlio Pedroni: Granted by CNPQ–Brazil.     

Global diversity of land planarians (Platyhelminthes, Tricladida, Terricola): a new indicator-taxon in biodiversity and conservation studies

Biodiversity conservation requires prioritization of areas for in situ conservation. In that perspective, the present study documents the global diversity of a component of the soil macrofauna, the land planarians, and concerns an exploratory analysis of their possible role as indicators of biodiversity. Diversity is described by three quantitative methods: (1) hotspots of species richness, selecting areas richest in species, (2) hotspots of range-size rarity, identifying areas richest in narrowly endemic species, and (3) complementarity, prioritizing areas according to their greatest combined species richness. The biodiversity measures of species richness and range-size rarity show a great correspondence in the identification of hotspots of diversity; both measures identify the following seven areas as the most biodiverse for land planarians: Sao Paulo, Florianopolis, western Java, Tasmania, Sri Lanka, North Island/New Zealand, and Sydney. It is discussed to what extent the results for the land planarians correspond with those obtained in other studies that assessed biodiversity hotspots for taxa on a global scale. It is noteworthy that land planarians identify a few global hotspots of diversity that generally do not feature, or only have low rankings, in other studies: New Zealand, southeastern Australia, and Tasmania.     

Meiotic crossover patterns: Obligatory crossover,interference and homeostasis in a single process

During meiosis, crossover recombination is tightly regulated. A spatial patterning phenomenon known as interference ensures that crossovers are well-spaced along the chromosomes. Additionally, every pair of homologs acquires at least one crossover. A third feature, crossover homeostasis, buffers the system such that the number of crossovers remains steady despite decreases or increases in the number of earlier recombinational interactions. Here we summarize recent work from our laboratory supporting the idea that all 3 of these aspects are intrinsic consequences of a single basic process and suggesting that the underlying logic of this process corresponds to that embodied in a particular (beam-film) model.     

Meiotic crossover patterns: Obligatory crossover,interference and homeostasis in a single process

During meiosis, crossover recombination is tightly regulated. A spatial patterning phenomenon known as interference ensures that crossovers are well-spaced along the chromosomes. Additionally, every pair of homologs acquires at least one crossover. A third feature, crossover homeostasis, buffers the system such that the number of crossovers remains steady despite decreases or increases in the number of earlier recombinational interactions. Here we summarize recent work from our laboratory supporting the idea that all 3 of these aspects are intrinsic consequences of a single basic process and suggesting that the underlying logic of this process corresponds to that embodied in a particular (beam-film) model.     

Reprogramming of cell junction modules during stepwise epithelial to mesenchymal transition and accumulation of malignant features in vitro in a prostate cell model

Epithelial to mesenchymal transition (EMT) is pivotal in tumor metastasis. Our previous work reported an EMT model based on primary prostate epithelial cells (EP156T) which gave rise to cells with mesenchymal phenotype (EPT1) without malignant transformation. To promote prostate cell transformation, cells were maintained in saturation density cultures to select for cells overriding quiescence. Foci formed repeatedly following around 8 weeks in confluent EPT1 monolayers. Only later passage EPT1, but not EP156T cells of any passage, could form foci. Cells isolated from the foci were named EPT2 and formed robust colonies in soft agar, a malignant feature present neither in EP156T nor in EPT1 cells. EPT2 cells showed additional malignant traits in vitro, including higher ability to proliferate following confluence, higher resistance to apoptosis and lower dependence on exogenous growth factors than EP156T and EPT1 cells. Microarray profiling identified gene sets, many of which belong to cell junction modules, that changed expression from EP156T to EPT1 cells and continued to change from EPT1 to EPT2 cells. Our findings provide a novel stepwise cell culture model in which EMT emerges independently of transformation and is associated with subsequent accumulation of malignant features in prostate cells. Reprogramming of cell junction modules is involved in both steps.