Contrasting soil microbial responses to fertilization and tillage systems in canola rhizosphere

Information regarding the simultaneous evaluation of tillage and fertilization on the soil biological traits in canola production is not available. Therefore, field experiments were conducted in 2007–2010 in a split plot based on randomized complete block design with three replications. Main plots consisted of conventional tillage (CT); minimum tillage (MT) and no tillage (NT). Six strategies of fertilization including (N₁): farmyard manure (cattle manure); (N₂): compost; (N₃): chemical fertilizers; (N₄): farmyard manure + compost; (N₅): farmyard manure + compost + chemical fertilizers and (N₆): control, were arranged in sub plots. Results showed that the addition of organic manure increased the soil microbial biomass. No tillage system increased microbial biomass compared to other tillage systems. The activities of all enzymes were generally higher in the N₄ treatment. The activity of phosphatase and urease tended to be higher in the no tillage treatment compared to the CT and MT treatments.     

Changes in soil microbial functional diversity under different vegetation restoration patterns for Hulunbeier Sandy Land

Grassland desertification seriously threatens economic and social sustainable development. How to control grassland desertification, and even to restore and reconstruct grassland has been paid much attention. Vegetation restoration is considered to be a very effective solution. Soil contains an immense diversity of microbes, and the characteristics of soil microbial communities are sensitive indicators of soil. It is important to understand the relationship between vegetation and soil microbial diversity during the restoration process. Based on Biolog-Eco technology, a case study was carried out to investigate the effects of five different vegetation restoration patterns on soil microbial functional diversity after four years in sandy land in Hulunbeier, China. The five vegetation restoration patterns included mono-cultivar planting of Agropyron cristatum (UA), mono-cultivar planting of Hedysarum fruticosum (UH), mono-cultivar planting of Caragana korshinskii (UC), and mixed-cultivar planting of A. cristatum and H. fruticosum (AC), mixed-cultivar planting of A. cristatum, H. fruticosum, C. korshinskii and Elymus nutans (ACHE). Completely degraded sandy land was used as control.The results indicated that the vegetation restoration significantly increased soil microbial activity. The Average Well Color Development (AWCD), which represents soil microbial metabolic activity, followed the order of UC > UH > UA > ACHE > AC > control. AWCD of five vegetation restoration patterns were all higher than that of control, and the highest soil microbial metabolic activity in mono-cultivar planting of C. korshinskii treatment was found. Five vegetation restoration patterns resulted in significant increase in Shannon index (H), evenness (E) and Simpson’s Dominance (D) of soil microbial community. Greater Shannon index and Simpson’s Dominance was observed in UC treatment than in other four vegetation restoration treatments and control. ACHE treatment had the highest evenness index (E) of soil microbial community. The principal component analysis (PCA) indicated a similar mode in carbon utilization for soil microbial community of UA, AC, ACHE and CK. However, UH and UC treatments had special carbon utilization mode. Treatments of UA, AC, ACHE and CK concentrated in the negative direction of the first principal component. Conversely, treatments of UH and UC concentrated in the positive direction of the first and second principal component respectively. The carbon sources mostly used by soil microbes were carbohydrates, amino acids, metabolic mediates and secondary metabolites. Therefore, vegetation restoration enhanced the metabolic activity and functional diversity of microbial community in sandy soil.     

Microbial activity and organic matter dynamics during 4 years of irrigation with treated wastewater

The global changes in rainfall frequency and quantity have subjected arid and semi-arid regions to long periods of drought. As this phenomenon corresponds to increasing trend of water shortage, the use of treated wastewater (TWW) has been suggested as an alternative for irrigation of agricultural crops in these areas. The aim of the study was to investigate the short- and middle-term effects of TWW irrigation on the soil microbial activities and organic carbon content. The microbial community activity was measured every 1–3 months for 4 years in a persimmon (Diospyros kaki) orchard. These activities were used here as an indicator for the soil health. The hydrolysis activity (detected by fluorescein diacetate hydrolysis (FDA) assay) increased during the irrigation season and was significantly higher in soils irrigated with TWW compared to those irrigated with freshwater (FW). This activity was also negatively correlated with dissolved organic carbon (DOC) concentrations during the irrigation season, suggesting that the community degraded the DOC in the soils regardless of its origin. The irrigation season was also characterized by an increase in nitrification potential in both TWW- and FW-irrigated soils, which coincided with high concentrations of nitrate (50 mg kg⁻¹ soil). Overall, there was an increase in all measured activities during the irrigation season, and they were higher in the TWW soils. However, it appears that after each irrigation season, the potential activity of the community returned to levels similar to or even slightly lower than those of FW-irrigated soil during the wet season, suggesting that the periodic irrigation did not significantly change the soil microbial activity.     

Factors governing survival of black willow (Salix nigra) cuttings in a streambank restoration project

A field study was conducted at Little Topashaw Creek in northern Mississippi, aimed at expanding the limited database on the survivorship of Salix nigra (black willow) cuttings planted on riparian restoration sites. We tested the hypothesis that sediment moisture availability (deficit, excess) as mediated by sediment texture and depth to the prevailing water table is a major factor governing black willow survival during the initial stage of establishment following transplanting. Replicated plots were established across elevational gradients and a range of soil texture. Each plot contained 16 planted cuttings (2.5 cm diameter × 2.5 m length). Plot depth to water table, soil texture, and soil redox potential were measured. Plant gas exchange, leaf chlorophyll content, growth, and survival were monitored periodically over two growing seasons. Survival was best at low elevation compared to cuttings planted at mid- and high elevations. Poor survival and growth were noted for cuttings that encountered sediment moisture deficits in plots with coarse texture while the best cutting survival was recorded for intermediate sand content plots. Results indicated that plot location on the bank and soil texture are two important factors that influence riverbank restoration success. Therefore, any riparian restoration plan should include careful assessment of these factors prior to undertaking such efforts.     

Assessment of soil salinization risks under irrigation with brackish water in semiarid Tunisia

The salinity problem is becoming increasingly widespread in arid countries. In semiarid Tunisia about 50% of the irrigated land is considered as highly sensitive to salinization. To avoid the risk of salinization, it is important to control the soil salinity and keep it below plant salinity tolerance thresholds. The objective of the present study was to provide farmers and rural development offices with a tool and methodology for predicting, monitoring of soil salinity for a better agronomical strategy. The experiments were carried out in the highly complex and heterogeneous semiarid Kalâat Landalous irrigated district of Tunisia. The field and laboratory measurements of soil and water properties were conducted in 1989 and 2006 at different observation scales (2900 ha, 1400 ha, 5200 m long transect, and soil profiles). Seventeen years of reclamation of a saline and waterlogged soil led to the reduction of average electrical conductivity of the soil saturated paste extract (ECe), measured at 5 soil depths (from 0 to 2 m) below the plant salt tolerance threshold and the dilution of groundwater salinity from 18.3 to 6.6 dS m⁻¹. The variation in soil salt storage (ΔMss = Mss₂₀₀₆ − Mss₁₉₈₉) in the vadose zone was negative, equal to about −145 × 10³ ton (≈−50 ton ha⁻¹). During the same period, the salt balance (Siw–Sdw) estimated from the input dissolved salt brought by irrigation water (Siw) and output salts exported by the drainage network (Sdw) was equal to −685 × 10⁶ kg and the Sdw was 945 × 10⁶ kg. Under irrigation and efficient drainage, the soil salinization could be considered as a reversible process. At the transect scale, the high clay content and the exchangeable sodium percentage was negatively correlated to saturated hydraulic conductivity. The textural stratification, observed at soil profile scale, favors accumulation of salt in the soil. Based on the findings related to the multiscale assessment of soil salinity and groundwater properties, soil salinization factors were identified and a soil salinization risk map (SRU) was elaborated. The shallow groundwater constitutes the main risk of soil salinization. This map can be used by both land planners and farmers to make appropriate decisions related to crop production, and soil and water management.     

Sensitivity and resistance of soil fertility indicators to land-use changes: New concept and examples from conversion of Indonesian rainforest to plantations

Tropical forest conversion to agricultural land leads to a strong decrease of soil organic carbon (SOC) stocks. While the decrease of the soil C sequestration function is easy to measure, the impacts of SOC losses on soil fertility remain unclear. Especially the assessment of the sensitivity of other fertility indicators as related to ecosystem services suffers from a lack of clear methodology. We developed a new approach to assess the sensitivity of soil fertility indicators and tested it on biological and chemical soil properties affected by rainforest conversion to plantations. The approach is based on (non-)linear regressions between SOC losses and fertility indicators normalized to their level in a natural ecosystem. Biotic indicators (basal respiration, microbial biomass, acid phosphatase), labile SOC pools (dissolved organic carbon and light fraction) and nutrients (total N and available P) were measured in Ah horizons from rainforests, jungle rubber, rubber (Hevea brasiliensis) and oil palm (Elaeis guineensis) plantations located on Sumatra. The negative impact of land-use changes on all measured indicators increased in the following sequence: forest < jungle rubber < rubber < oil palm. The basal respiration, microbial biomass and nutrients were resistant to SOC losses, whereas the light fraction was lost stronger than SOC. Microbial C use efficiency was independent on land use. The resistance of C availability for microorganisms to SOC losses suggests that a decrease of SOC quality was partly compensated by litter input and a relative enrichment by nutrients. However, the relationship between the basal respiration and SOC was non-linear; i.e. negative impact on microbial activity strongly increased with SOC losses. Therefore, a small decrease of C content under oil palm compared to rubber plantations yielded a strong drop in microbial activity. Consequently, management practices mitigating SOC losses in oil palm plantations would strongly increase soil fertility and ecosystem stability. We conclude that the new approach enables quantitatively assessing the sensitivity and resistance of diverse soil functions to land-use changes and can thus be used to assess resilience of agroecosystems with various use intensities.     

Short-term response of soil enzyme activities in a chlorpyrifos-treated mesocosm: Use of enzyme-based indexes

Soil enzyme activities have been long used as indicators of soil contamination, and their integration into numerical indexes of microbial functional diversity is a practical approach in the environmental risk assessment of soil pollutants. However, suitable numerical indexes need to be developed and standardized for monitoring deterioration of soil quality by agrochemicals. Herein, a mesocosm study was performed to examine short-term responses of selected soil enzyme activities to chlorpyrifos (Lorsban^® 4E). Hydrolases (carboxylesterase, acid phosphatase, β-glucosidase, urease and protease) and oxidoreductases (dehydrogenase and catalase) were measured in Andisols 14 d after an application with two doses (4.8 and 24 kg a.i. ha⁻¹) of chlorpyrifos. Both application rates caused a strong inhibition of carboxylesterase (62–78% of controls), acid phosphatase (56–60%) and β-glucosidase (43–58%) activities. Soil microbial activity was also reduced in pesticide-sprayed soils as indicated by the decreased dehydrogenase (47%) and catalase (38%) activities compared with control soils. However, only carboxylesterase activity showed a dose-dependent response with the chlorpyrifos application rate. An in vitro trial was further performed to provide evidence of a direct interaction between the enzyme (carboxylesterase, acid phosphatase and β-glucosidase) and the pesticide (chlorpyrifos and its main metabolites chlorpyrifos-oxon and 3,5,6-trichloro-2-pyridinol). Results of these in vitro assays showed that the activity of carboxylesterase was directly affected by chlorpyrifos-oxon and, at less extend, by chlorpyrifos, whereas variations of both acid phosphatase and β-glucosidase activities were likely dependent on changes in microbial activity. Urease and protease activities did not change in pesticide-treated soils compared with pesticide-free soils. Despite the absence of response in these two N-cycling enzyme activities, four enzymatic indexes (geometric mean, weighted mean, “treated-soil quality index” [T-SQI] and “integrated biological response” [IBRv2] index) were significantly lower in the chlorpyrifos-sprayed soils compared with controls. Moreover, there was a significant (r² = 0.87, P < 0.0001) correlation between T-SQI and IBRv2 scores, which suggested that the IBRv2 index (an index used for assessing animal’s health inhabiting contaminated sites) may be a complementary index in soil quality assessment.     

Assessment of soil microbial diversity measurements as indicators of soil functioning in organic and conventional horticulture systems

Soil quality assessment is necessary to detect changes on soil properties among different management practices. Some microbial properties could be useful to predict changes in soil providing an integrated and relevant vision of soil functioning. The aim of this work was to evaluate and compare different methods to assess microbial diversity, such as methyl ester fatty acids (PLFA) and catabolic response profiles (CRP) to act as indicators of soil functioning. The study was carried out in an intensive horticulture production system. Undisturbed soil, 5 years plots, and more than 20 years plots under organic and conventional production were studied. Principal component analysis followed by multivariate discriminate analysis showed that d-glucose, d-glucosamine, α-ketobutyric, α-ketoglutaric and uric acids were the substrates with the highest sensitivity to separate situations. The same analysis was performed for PLFA, showing that C18:1w9, C13:0, C16:1w9, C14:0, i15:0 and cy19:0 methyl ester fatty acids were the most sensitive. Multivariate analysis of variance of selected substrates and fatty acids showed that CRP and PLFA techniques were both capable to characterize the studied systems. Saturated/monounsaturated (S/M), iso/anteiso (i/a) and cyclopropyl/precursors (cy/pre) microbial stress indicators were higher in plots under conventional management, presenting also these situations the lowest microbial biomass and fungi/bacteria ratio (F/B), especially in plots under conventional management for more than 20 years. Microbial functional diversity, calculated as evenness (E) from CRP was capable to distinguish between all situations and management systems showing the potential of this measurement to act as an integrative indicator of soil functioning.     

Effects of plant diversity on microbial biomass and community metabolic profiles in a full-scale constructed wetland

There has been less understanding of relations of microbial community patterns with plant diversity in constructed wetlands. We conducted a single full-scale subsurface vertical flow constructed wetland (SVFCW, 1000 m²) study focusing on domestic wastewater processing. This study measured the size and structure of microbial community using fumigation extraction and BIOLOG Ecoplate? techniques, to examine the effects of macrophyte diversity on microbial communities that are critical in treatment efficiency of constructed wetlands. We also determined the relationship of plant diversity (species richness) with its biomass production under disturbance of the same wastewater supply. Linear regression analysis showed that plant biomass production strongly correlated with plant species richness (R = 0.407, P < 0.001). Increase in plant species richness increased microbial biomass carbon and nitrogen (R = 0.494, P < 0.001; R = 0.465, P < 0.001) and utilization of amino acids on Ecoplates (R = 0.235, P = 0.03), but limited the utilization of amine/amides (R = ?0.338, P = 0.013). Principal components analysis (PCA) showed that the diversity and community-level physiological profiles (CLPP) of microbial community at 168 h of incubation strongly depended on the presence or absence of plant species in the SVFCW system, but not on the species richness. This is the first step toward understanding relations of plant diversity with soil microbial community patterns in constructed wetlands, but the effect of species diversity on microbial community should be further studied.     

Ground cover and slope exposure effects on micro- and mesobiota in forest soils

The interrelation of Alpine topography with the micro − and mesobiota is still poorly understood. We investigated the effects of ground cover type and slope exposure on the soil microbial biomass (double-stranded DNA, dsDNA) and abundances (real time PCR, qPCR); hydrolytic enzyme activities; and enchytraeid community structure in top soils (2.5-cm increments depth) in subalpine forests in the Italian Alps. Dominant ground covers were grass, moss, litter and woody debris at the north- and the south-facing slopes. The autochthonous soil microbiota (bacteria, fungi and archaea) was quantified by qPCR in the extracellular (eDNA) and intracellular fraction (iDNA) of the total soil DNA pool. A higher eDNA/iDNA ratio indicative of lower microbial activity was recorded in the deepest layer of the grass plots at the north-facing slope. This can be related to a lower degradation of eDNA and/or to an accumulation of eDNA with increasing depth as a result of leaching. The exposure effect was enzyme-specific and higher activities occurred under woody debris primarily at the south-facing slope. These plots also showed a higher nutrient content and a greater microbial biomass assessed as dsDNA yields. Total microannelid abundance was elevated on north-facing slopes on account of strong acidity indicator species. This was related to soil pH being one unit lower compared to the south-facing slope. The thickness of the organic layer (OL + OF + OH) was elevated at the north-facing slope due to a considerably thicker OH-horizon. The vast majority of microannelids at this slope occurred in the organic layer, while at south exposure they were almost evenly distributed between the organic layer and the mineral soil (A-horizon). Exposure was found to be more determinative for the composition of microannelid assemblages than the ground cover type.     

Effect of long-term nutrient managements on biological and biochemical properties of semi-arid tropical Alfisol during maize crop development stages

Understanding the influence of organic or inorganic nutrient management on soil biology and biochemistry during crop growth may help to develop more sustainable fertilization strategies. Hence, the biological variables including soil organic carbon (SOC), microbial biomass carbon (MBC), six cultivable microbial communities, five hydrolytic enzymes activity and soil respiratory indices from a long-term fertility experiment field (>100 years) were assessed at different growth stages of maize. The samples were taken from four long-term treatments viz., control (no fertilization), balanced inorganic fertilizers (IC), organic amendments (OM) and integrated nutrient management (INM, organic manure plus chemical fertilizers) at five different stages of maize cropping (S1, pre-cropping; S2, five days after sowing; S3, vegetative; S4, flowering; S5, after harvesting). Responses of most of the assessed parameters to organic fertilization (OM and INM) were significantly higher than those from inorganically managed and control soils. There was significant difference in SOC due to long-term nutrient managements (OM > INM > IC > control) but not due to growth stages of maize. MBC was also higher in OM and INM compared to IC and control and found significantly different at growth stages of maize. Values of microbial counts and assessed enzyme activities were highest at vegetative stage of maize following a declined trend at later stages. The respiration studies indicate a difference between the responses of substrate induced respiration rate (SIR) and metabolic quotient (qCO₂). SIR was more significantly influenced by long-term nutrient managements than crop stages, while qCO₂ was by early stage of maize growth (S2) alone. The principal component analysis (PCA) identifies MBC, qCO₂, SIR, dehydrogenase, phosphatase and aryl sulphatase and counts of Actinobacteria and diazotrophs as major drivers for the variability among the samples. PCA discriminated OM and INM samples from IC and control and vegetative stage of maize from other stages. The interaction effects of long-term nutrient managements and maize growth stages were found significant to MBC, counts of Actinobacteria and diazotrophs and activities of dehydrogenase, acid phosphatase and aryl sulphatase. However, the resilience of semi-arid tropical soil, independent of long-term nutrient management adoptions, was not affected due to maize growth. The present study thus provides some reliable biological indicators to monitor the semi-arid tropical soils, those influenced by nutrient managements.     

Soil property,CO2 emission and aridity index as agroecological indicators to assess the mineralization of cover crop green manure in a Mediterranean environment

In this study soil chemical and biochemical properties, cover crop biomass production and quality, and climatic factors (AI) have been taken into account in order to identify sensitive agroecological indicators suitable for an early assessment of green manuring outcomes, measured in terms of soil CO₂ emission and soil mineralization dynamics in a short term experiment in a Mediterranean environment. The field experiment was conducted over two cropping rotations during 2004–2005 in central Italy. A winter cover crop/sweet pepper sequence with the cover crop used as green manure was adopted. The cover crop treatments were common vetch (CV), rye grass (RG), and fallow soil as the control (Control). Soil enzyme activities (acid phosphatase. protease and β-glucosidase), CO₂ emission, and inorganic nitrogen concentrations were monitored from cover crop green manure incorporation to pepper harvesting in order to evaluate soil mineralization dynamics. The climatic conditions were summarized by the monthly aridity index (AI) calculated as the precipitation/temperature ratio. A group of mineralization indexes, calculated using values of available nitrogen and enzyme activities, was used to describe the soil process during crop cycle after green manure. The mineralization process dynamic results as a combined effect of climatic conditions and soil organic matter quality produced by different cover crop green manures. The common vetch green manuring was effective in lowering the soil C/N with respect to the control soil (5.7 vs. 8.3 and 8.5 vs. 12.1 in 2004 and 2005, respectively), promoting CO₂ emission (8.95 vs. 5.19 and 6.75 vs. 4.28 Mg CO₂-C ha⁻¹ in 2004 and 2005, respectively), enzyme activity, nitrogen release, and crop aboveground biomass (8.59 vs. 7.05 Mg ha⁻¹ dry matter). Among the selected agroecological indicators, the relationships between enzyme activities and the monthly aridity index may suggest a new approach for agronomists and soil scientists to understand the combined effect of temperature and precipitation on soil mineralization dynamic. The high aridity index at the time of green manuring may have caused a priming effect of SOM and promoted soil mineralization during the vegetable crop growing season in a Mediterranean environment. Finally, no evidence was found between soil CO₂ emission and the aridity index; soil respiration was mainly affected by cover crop biomass and the soil C/N ratio.     

Influence of rhizospheric microbial inoculation and tolerant plant species on the rhizoremediation of lindane

Application of rhizospheric microbes to enhance the phytoremediation of organic pollutants has gained considerable attention recently due to their beneficial effects on the survival and growth of plants in contaminated soil sites. The present study was demonstrated to test the combined rhizoremediation potential of Staphylococcus cohnii subspecies urealyticus in the presence of tolerant plant Withania somnifera grown in lindane spiked soil. Withania was grown in garden soil spiked with 20 mg kg⁻¹ of lindane and inoculated with 100 ml of microbial culture (8.1 × 10⁶ CFU). Effect of microbial inoculation on plant growth, lindane uptake, microbial biomass carbon, dehydrogenase activity, residual lindane concentration and lindane dissipation percentage were analyzed. The microbial inoculation significantly enhances the growth and lindane uptake potential of test plant (p < 0.05). Furthermore, there was an enhanced dissipation of lindane observed in microbial inoculated soil than the dissipation rate in non-inoculated soil (p < 0.01) and the dissipation rate was positively correlated with the soil dehydrogenase activity and microbial biomass carbon (p < 0.05). The study concludes that the integrated use of tolerant plant species and rhizospheric microbial inoculation can enhance the dissipation of lindane, and have practical application for the in situ remediation of contaminated soils.     

Cultivation impacts soil microbial dynamics in dry tropical forest ecosystem in India

We studied for two years the seasonal changes in plant available nitrate and ammonium nitrogen (N), nitrification, N-mineralization, microbial biomass carbon (MBC), nitrogen (MBN) and phosphorus (MBP) in two forest and three cropland sites, derived from a tropical forest ecosystem of India. Results indicated that seasonal values of nitrate N, ammonium N and phosphate P ranged from 7.33–12.99, 5.1–10.22 and 4.0–7.8 μg g^?1 in forest and 4.13–9.26, 9.35–14.46 and 2.8–5.8 μg g^?1 in cropland ecosystems, respectively, with maximum values in summer and minimum in rainy seasons. Nitrification and N-mineralization values varied from 6–28 and 4–26 μg g^?1 mo^?1 in forest and 3–14 μg g^?1 mo^?1 and 4–17 μg g^?1 mo^?1 in cropland, with maximum values in rainy season and minimum in summer season.MBC, MBN MBP ranged from 393–753, 34–80 and 16–36 μg g^?1 in forests and 186–414, 21–41 and 11–22 μg g^?1 in croplands, being maximum in summer and minimum in rainy seasons. There was gradual increase in the values of inorganic N, nitrification, N-mineralization and MBC, MBN and MBP along the age of cropland. Analysis of variance indicated significant difference in the concentration of inorganic N, nitrification and N-mineralization and MBC, MBN and MBP due to sites and seasons.Cultivation caused decline in the mean annual organic C, N and P by 42%, 29% and 13%. The values of nitrate N were decreased by 23–38%, while ammonium N was increased by 39–74%. Nitrification and N-mineralization values were reduced by 39–63% and 40–60%, respectively. Microbial C, N and P were reduced by 44–54%, 41–50% and 28–44%, respectively. Nonetheless, the contribution of soil microbial biomass reflected in total N was enhanced from 4.76% in forest to 5.03% in cropland ecosystem. Enhancement of plant available ammonium-N and microbial contribution in total N are an indicator of natural conserving mechanism to check the nitrogen loss from the nutrient poor agro-ecosystem.     

Effect of early dry season induced by the Three Gorges Dam on the soil microbial biomass and bacterial community structure in the Dongting Lake wetland

In this study, we used the soil microbial biomass (SMB) and the bacterial community structure as indicators to determine the potential ecological responses of the Dongting Lake wetland (China) to the early dry season that has been induced by the Three Gorges Dam (TGD), the largest hydroelectric project in the world. We measured the soil properties, SMB and bacterial community structure for samples E0, E20 and E40 (for which the dry season arrived early by 0, 20 and 40 days, respectively). The results indicated a significant increase in SMB as the dry season occurred increasingly earlier. The microbial biomass carbon (MBC) was used as a representative for the SMB and increased for the samples in the following order: E0 < E20 < E40. The bacterial 16S rDNA gene copy number changed similarly to the MBC. Significant changes were also observed in the soil bacterial community structure. The bacterial community structure of E40 was more diverse than that of E20, which was similar to that of E0. The relationship between the bacterial community composition and the soil properties was evaluated by redundancy analysis (RDA). The results indicated that the lead time of the dry season was the controlling influence on the soil bacterial community structure.     

Variability of soil carbon sequestration capability and microbial activity of different types of salt marsh soils at Chongming Dongtan

Variations in the soil carbon sequestration capability of different types of salt marsh soils at Chongming Dongtan and its influencing factors were studied by analyzing the soil organic carbon (SOC) content, organic matter input and microbial activities. The results indicated that the total SOC content at Area A (southeast of Dongtan, sandy soil with Phragmites communis) was only 46.11% of that of Area B (northeast of Dongtan, clay soil with mixed P. communis and Spartina alterniflora) (P = 0.000 < 0.05), but their organic matter input per year was almost identical. These findings implied that Area B had a lower output of SOC. The microbial biomass at Area A was 3.83 times greater than that at Area B (P = 0.049 < 0.05); the soil catalase and invertase activities at Area A, which were related to carbon metabolism, were 60.31% (P = 0.006 < 0.05) and 34.33% (P = 0.021 < 0.05) higher than at Area B, respectively; and the soil respiration at Area A was also higher than at Area B. These findings implied that the microbial activities at Area A were greater than those at Area B, and therefore the carbon metabolism was rapid, resulting in increased SOC output at Area A. Increased water content and salinity in the clay soil at Area B may inhibit the microbial activities, thereby reducing the decomposition of the organic matter and enhancing carbon sequestration. In addition, some artificial measures for controlling spread of S. alterniflora at Area B (mowing/digging and tillage (M + D); mowing/digging and tillage/waterlogging (M + D + W)) were found to generally improve the microbial activity of soil, thereby increasing SOC output. However, when the two different physical controlling modes were compared, the SOC and microbial activities of the soil subjected to the M + D + W treatment were relatively high and low, respectively, due to waterlogging restraining the microbial metabolism. These findings indicated that the difference in microbial activities was the important factor leading to variability in the SOC sequestration capability between Areas A and B. Additionally, with the exception of soil texture and vegetation types, environmental conditions and artificial turbulence also influenced microbial activities of soil, and hence SOC output and organic carbon sequestration capability.     

Wastewater treatment by using kenaf in paddy soil and effect of dissolved oxygen concentration on efficiency

We previously reported that kenaf (Hibiscus cannabinus L.) planted in a zeolite-bed filter-ditch system provided highly effective treatment of wastewater. Here we compared that system with treatment in fallow paddy fields irrigated in different ways in a greenhouse. Paddy soil was a useful alternative to zeolite as the bed filter material. The efficiency of removal of N and P under furrow irrigation and flooding was 82–92% of that of the zeolite system. Most kenaf roots were distributed in water with a high dissolved oxygen (DO) concentration and a high redox potential; few roots grew in reducing soil under water. The roots distributed in the water contributed most to wastewater treatment. A low DO concentration (0.3 mg L⁻¹) decreased the efficiency of N and P removal. However, nightly low DO concentration (near 0 mg L⁻¹) alternating with daily high DO concentration did not seriously restrict the efficiency. An increase of alpha-naphthylamine oxidation activity in kenaf roots at low DO concentration is discussed in regard to induction of an oxygen-protective enzyme.     

Modifying orchard planting sites conserves entomopathogenic nematodes,reduces weevil herbivory and increases citrus tree growth,survival and fruit yield

In Florida, a root weevil pest of citrus, Diaprepes abbreviatus, is more damaging and attains higher population density in some orchards on fine textured, poorly drained “flatwoods” soils than in those on the deep, coarse sandy soils of the central ridge. Previous research revealed that sentinel weevil larvae were killed by indigenous entomopathogenic nematodes (EPNs) at significantly higher rates in an orchard on the central ridge, compared to one in the flatwoods. We hypothesized that filling tree planting holes in a flatwoods orchard with sandy soil from the central ridge would provide a more suitable habitat for EPNs, thereby reducing weevil numbers and root herbivory. Fifty trees were planted in oversized planting holes filled with coarse sand and 50 trees were planted in native soil in a split plot design where whole plots were species of introduced EPNs and split plots were soil type. Each of Steinernema diaprepesi, Steinernema riobrave, Heterorhabditis indica, Heterorhabditis zealandica, or no EPNs were introduced into the rhizospheres in 10 plots of each soil type. During four years, EPN numbers in soil samples and the relative abundance of seven species of nematophagous fungi associated with nematodes were measured three times using real-time PCR. The efficacy of EPNs against sentinel weevil larvae was also measured three times by burying caged weevils in situ. EPN species richness (P = 0.001) and diversity (P = 0.01) were always higher in sand than native soil. Soil type had no effect on numbers of EPNs in samples, but EPNs were detected more frequently (P = 0.01) in plots of sandy soil than native soil in 2011. Two nematophagous fungi species, Paecilomyces lilacinus and Catenaria sp. were significantly more abundant in nematode samples from sandy soil on all three sampling dates. Efficacy of EPNs against weevil larvae was greater in sandy soil inoculated with S. diaprepesi (P = 0.03) in June 2010 and in all treatments in sandy soil in May 2011 (P = 0.03). Sixty-eight percent more adult weevils (P = 0.01) were trapped emerging from native soil during two years than from sandy soil. By May 2011, the cumulative number of weevils emerging from each plot was inversely related (P = 0.01) to the numbers of EPNs detected in plots and to EPN efficacy against sentinels. Three trees in sandy soil died as a result of root herbivory compared to 21 trees in native soil. Surviving trees in sandy soil had trunk diameters that were 60% larger (P = 0.001) and produced 85% more fruit (P = 0.001) than those in native soil. Although it is not possible to characterize all of the mechanisms by which the two soil treatments affected weevils and trees, substitution of sand for native soil was an effective means of conserving EPNs and shows promise as a cultural practice to manage D. abbreviatus in flatwoods citrus orchards with a history of weevil damage to trees.     

Urine nitrification with a synthetic microbial community

During long-term extra-terrestrial missions, food is limited and waste is generated. By recycling valuable nutrients from this waste via regenerative life support systems, food can be produced in space. Astronauts’ urine can, for instance, be nitrified by micro-organisms into a liquid nitrate fertilizer for plant growth in space. Due to stringent conditions in space, microbial communities need to be be defined (gnotobiotic); therefore, synthetic rather than mixed microbial communities are preferred. For urine nitrification, synthetic communities face challenges, such as from salinity, ureolysis, and organics.In this study, a synthetic microbial community containing an AOB (Nitrosomonas europaea), NOB (Nitrobacter winogradskyi), and three ureolytic heterotrophs (Pseudomonas fluorescens, Acidovorax delafieldii, and Delftia acidovorans) was compiled and evaluated for these challenges. In reactor 1, salt adaptation of the ammonium-fed AOB and NOB co-culture was possible up to 45 mS cm⁻¹, which resembled undiluted nitrified urine, while maintaining a 44 ± 10 mg NH₄⁺–N L⁻¹ d⁻¹ removal rate. In reactor 2, the nitrifiers and ureolytic heterotrophs were fed with urine and achieved a 15 ± 6 mg NO₃⁻–N L⁻¹ d⁻¹ production rate for 1% and 10% synthetic and fresh real urine, respectively. Batch activity tests with this community using fresh real urine even reached 29 ± 3 mg N L⁻¹ d⁻¹. Organics removal in the reactor (69 ± 15%) should be optimized to generate a nitrate fertilizer for future space applications.     

Experimental evidence for a delayed response of the above-ground vegetation and the seed bank to the invasion of an annual exotic plant in deciduous forests

Invasions by alien plants significantly affect native biodiversity and ecosystem functioning. We conducted a 5-year field experiment to investigate potential effects of the annual invasive plant Impatiens glandulifera on both the native above-ground vegetation and the soil seed bank in a deciduous forest in Switzerland. Eight years after the establishment of I. glandulifera, we set up plots in patches invaded by the alien plant, in plots from which the invasive plant had been manually removed and in plots which were not yet colonized by the invasive plant. We examined plant species richness, diversity and plant species composition in the above-ground vegetation and soil seed bank in all plots one year and five years after the initiation of the experiment. The 36 plots (3 plot types × 6 replicates × 2 sites) were equally distributed over two forest sites. Neither the native above-ground vegetation nor the soil seed bank was influenced by the presence of I. glandulifera one year after the start of the field experiment. After five years, however, plant species richness of both the above-ground vegetation and the soil seed bank was reduced by 25% and 30%, respectively, in plots invaded by the alien plant compared to plots from which I. glandulifera had been removed or uninvaded plots. Furthermore, plots invaded by the alien plant had a lower total seedling density (reduction by 60%) and an altered plant species composition in the soil seed bank compared to control plots. Our field experiment indicates that negative effects of the annual invasive plant on the native above-ground vegetation and soil seed bank of deciduous forests become visible with a delay of several years.