Fungal endophytes of turmeric (<Emphasis Type="Italic">Curcuma longa</Emphasis> L.) and their biocontrol potential against pathogens <Emphasis Type="Italic">Pythium aphanidermatum</Emphasis> and <Emphasis Type="Italic">Rhizoctonia solani</Emphasis>

Endophytic fungi have been isolated from the healthy turmeric (Curcuma longa L.) rhizomes from South India. Thirty-one endophytes were identified based on morphological and ITS–rDNA sequence analysis. The isolated endophytes were screened for antagonistic activity against Pythium aphanidermatum (Edson) Fitzp., and Rhizoctonia solani Kuhn., causing rhizome rot and leaf blight diseases in turmeric respectively. Results revealed that only six endophytes showed >?70% suppression of test pathogens in antagonistic dual culture assays. The endophyte T. harzianum TharDOB-31 showed significant in vitro mycelial growth inhibition of P. aphanidermatum (76.0%) and R. solani (76.9%) when tested by dual culture method. The SEM studies of interaction zone showed morphological abnormalities like parasitism, shriveling, breakage and lysis of hyphae of the pathogens by endophyte TharDOB-31. Selected endophytic isolates recorded multiple plant growth promoting traits in in vitro studies. The rhizome bacterization followed by soil application of endophyte TharDOB-31 showed lowest Percent Disease Incidence of rhizome rot and leaf blight, 13.8 and 11.6% respectively. The treatment of TharDOB-31 exhibited significant increase in plant height (85 cm) and fresh rhizome yield/plant (425 g) in comparison with untreated control under greenhouse condition. The confocal microscopy validates the colonization of the TharDOB-31 in turmeric rhizomes. The secondary metabolites in ethyl acetate extract of TharDOB-31 were found to contain higher number of antifungal compounds by high resolution liquid chromatograph mass spectrometer analysis. Thereby, endophyte T. harzianum isolate can be exploited as a potential biocontrol agent for suppressing rhizome rot and leaf blight diseases in turmeric.     

Induction of systemic resistance by mixtures of fungal and endophytic bacterial isolates against <Emphasis Type="Italic">Pythium aphanidermatum</Emphasis>

The efficacy of eight fungal and ten endophytic bacterial isolates were tested for their ability to inhibit the growth of Pythium aphanidermatum, the causal agent of chilli damping-off. In vitro studies revealed that Trichoderma viride (TVA) and endophytic Pseudomonas fluorescens (EBL 20-PF) showed the highest inhibition of mycelial growth (71.5%; 76.7%) of P. aphanidermatum. Both the antagonists were compatible with each other and they were tested alone and together in vivo for the control of P. aphanidermatum. Besides, the induction of defense-related enzymes such as peroxidase (PO), polyphenoloxidase (PPO), phenylalanine ammonia-lyase (PAL), PR-protein like β-1, 3-glucanase and the accumulation of phenolics in chilli seedlings due to the application of bioagents were also studied. Combined application of talc-based formulation of bio-agents and challenge inoculated with P. aphanidermatum recorded maximum induction of defense-related enzymes, PR-proteins and accumulation of phenolics compared with individual application. This study suggest that the increased induction of defense-related enzymes (four to fivefold) and phenolic content (sixfold) due to the combination treatment of bioagents might have involved in the reduction of damping-off incidence and in turn increased the plant growth and yield of chilli.     

Biological inductions of systemic resistance to collar rot of peppermint caused by Sclerotium rolfsii

The efficacy of eight fungal and eight bacterial isolates was tested for their ability to inhibit the growth of Sclerotium rolfsii, the causal agent of collar rot of peppermint. In vitro studies revealed that Trichoderma harzianum (THA) and Pseudomonas fluorescens (PFM) showed the highest inhibition of mycelial growth (68.28; 74.25 %) of S. rolfsii. The antagonists T. harzianum and P. fluorescens were compatible with each other and they were tested alone and together in in vivo for the control of S. rolfsii. Besides, the induction of defense-related enzymes such as peroxidase, polyphenoloxidase, phenylalanine ammonia-lyase, and the accumulation of phenolics in peppermint plants due to the application of bioagents were also studied. Combined application of talc-based formulation of bioagents and challenge inoculation with S. rolfsii recorded maximum induction of defense-related enzymes, and accumulation of phenolics as compared with individual application. This study suggests that the increased induction of defense-related enzymes (two- to threefold) and phenolic content (threefold) due to the combination treatment of bioagents might be involved in the reduction of collar rot incidence.     

Pythium aphanidermatum Causing Pythium Rot on Lampranthus spectabilis in Korea

Pythium aphanidermatum was found to be associated with rotting of leaves and stems in Lampranthus spectabilis in the summers of 2013 and 2014. Infected plants were initially characterized by water‐soaked and discoloured tissue, which are soon covered with cottony aerial hyphae. Subsequently, infected tissues wilted, leaves and stems appeared desiccated, and infected plants died. Pathogenicity of a representative isolate was proved, fulfilling Koch's postulates. Sequence of the internal transcribed spacer region of ribosomal DNA from the isolate shared 100% identity with that of P. aphanidermatum. To our knowledge, this is the first report of P. aphanidermatum causing leaf and stem rot on L. spectabilis in Korea.     

Trichoderma viride—Mediated Modulation of Oxidative Stress Network in Potato Challenged with Alternaria solani

Potato is a staple food crop cultivated globally. Heavy losses to potato production are reported annually due to soil borne phytopathogens. Trichoderma viride is a potential biocontrol agent that improves host defense. In the present study, potato tubers bio-primed with T. viride were studied for its effect on growth promotion and modulation of antioxidant system as well as defense-related enzymes in potato plants when challenged with Alternaria solani. Potato tubers treated with T. viride and after 45 days of sowing, plants were challenged with pathogen. Significant improvement in various growth parameters was recorded in bio-primed plants. While, in pathogen-challenged plants, an enhanced intracellular concentration of H₂O₂ and O₂^? was observed. Interestingly, T. viride when applied with pathogen, significantly improved the redox homeostasis by modulating the antioxidant enzyme activities. The significant induction of defense enzymes and free phenolic content suggested that T. viride-treated plants provide enhanced protection from oxidative stress induced during A. solani challenge via. elevated accumulation of antioxidant enzymes, polyphenolic compounds, and defense-related enzymes.

     

Alteration of the Unsaturated to Saturated Ratio of Fatty Acids in Bacterial Lipids by Alcohols

Silver-coated cloth (SCC) effectively controlled root rot that was caused by Pythium aphanidermatum in hydroponically grown cucumber plants. The presence of SCC in the hydroponic solution reduced the root rot from 100% to 10% 20 days after inoculation with zoospores of P. aphanidermatum. It was suggested that the inhibition of SCC was caused not only by the silver ion dissolved from SCC, but also by the metallic silver and silver compounds formed on the surface of the root.     

Bacterial antagonists and hexanal-induced systemic resistance of mango fruits against Lasiodiplodia theobromae causing stem-end rot

Induction of defense-related enzymes, such as phenylalanine ammonia lyase (PAL), peroxidase (PO), polyphenol oxidase (PPO), superoxide dismutase (SOD) and catalase (CAT) due to bacterial antagonists viz., Pseudomonas fluorescens (Pf1) and Bacillus subtilis (EPCO16) and plant-derived lipoxygenase volatile compound hexanal, were studied in mango fruits against Lasiodiplodia theobromae causing stem-end rot disease. The results showed increased induction of all the defense-related enzymes in mango fruits 3–5 days after dipping treatment with combination of bacterial antagonists and hexanal when compared to untreated control treatment and treatment with fungicide carbendazim in storage condition. The increased activity was observed up to 3 days after treatment and thereafter declined. Further, increased expression of specific isoforms of PO, PPO, SOD and CAT were also observed in the treatment effect of P. fluorescens (0.5%)?+?hexanal (0.02%) treated fruits against L. theobromae. From the results obtained, it is inferred that due to the enhancement of defense-related enzymes via the phenylpropanoid pathway and due to secretion of secondary metabolites that would play significant role in hindering the pathogen quiescence and further invasion in mango fruits and thereby prevent the fruit rot.     

Characterization of Pythium spp. associated with root rot of tobacco seedlings produced using the float tray system in Zimbabwe

The study was undertaken to identify and characterize Pythium isolates associated with root rot disease of tobacco seedlings as a first step towards developing management strategies for the pathogen. A total of 85 Pythium isolates were collected from diseased tobacco seedlings during 2015–2016 tobacco growing season. The isolates were identified to species level using sequencing of the internal transcribed spacer region. Thereafter, a subset of the isolates was tested for sensitivity to the commonly used fungicides, metalaxyl, azoxystrobin and a combination of fenamidone/propamocarbby growing isolates on Potato Dextrose Agar plates amended with the fungicides. The sequence analysis of the ITS‐rDNA identified Pythium myriotylum as the dominant Pythium species associated with the root rot of tobacco seedlings in Zimbabwe. Pythium aphanidermatum and P. insidiosum were also identified albeit at lower frequencies. Phylogenetic analyses of the ITS region of the P. myriotylum isolates showed little sequence diversity giving rise to one distinct clade. The fungicide sensitivity tests showed that metalaxyl provided the best control of P. myriotylum in vitro, as compared to other fungicides. To the best of our knowledge, this is the first comprehensive study to determine and characterize Pythium species associated with root rot of tobacco in the float seedling production system in Zimbabwe.     

Induction of systemic resistance by mixtures of antagonist bacteria for the management of crown rot complex on banana

Among nine native bacterial strains isolated from banana fruit surface and rhizosphere and six bacterial strains introduced from the culture collection, three native strains viz., non-fluorescent Pseudomonas (NFP₆), Pseudomonas fluorescens (Pf3a), and Bacillus subtilis (BS₁); and two bacterial strains from culture collection viz., Azospirillum (AS1) and Azotobacter (AZ1) have recorded maximum inhibition of mycelial growth of crown rot pathogens (Lasiodiplodia theobromae and Colletotrichum musae) under in vitro condition. When these effective bacterial strains were treated on banana fruits under in vivo, significant reduction of crown rot disease and increased shelf life of banana was observed. However, bacterial strains applied as three way combinations (NFP₆ + Pf3a + BS₁) had greater effect compared with individual and two way combination of bacterial antagonist treatments. The effect of crown rot disease reduction was also comparable to that of fungicide Benomyl (0.1%) both under cold and room temperature storage conditions. Besides, the induction of defense-related enzymes such as phenylalanine ammonia-lyase (PAL), peroxidase (PO), polyphenoloxidase (PPO), and the accumulation of phenolics in banana fruit due to the application of bacterial antagonists were also studied at five different time intervals viz. 0th, 1st, 3rd, 5th and 7th days after treatment. When banana fruits treated with bacterial antagonists (individually and also in different combinations) and challenge-inoculated with crown rot pathogens, up to fourfold increase in defense-related enzymes and 3.6 fold increase in phenolic content was observed compared with control. The activity of these defense-related enzymes and phenolic content had gradually increased from 1st day after treatment to 3rd after treatment and reached their peak on 5th day after treatment. Among the bacterial antagonists which have been applied individually and in different combinations, the banana fruits treated with three-way antagonist mixture, i.e., NFP₆ + Pf3a + BS₁ recorded maximum induction of defense-related enzymes and accumulation of phenolics compared with individual and two-way combination of antagonist mixtures. This study suggest that the increased induction of defense-related enzymes and phenolic content due to the treatment of banana fruits with bacterial antagonists might have involved in the reduction of crown rot severity and in turn increased the shelf life of banana fruits.     

Effect of Bacillus subtilis on Growth and Protection of Onion against White Rot

The effect of isolates of Bacillus subtilis applied as seed treatments on plant growth and white rot on three onion cultivars was studied for two seasons on muck soil of Fraser valley of British Columbia. The isolates of B. subtilis provided significant season-long protection against onion white rot on all three cultivars. The most effective isolate (BACT 2) protected the onion cultivar Autumn spice against onion white rot in both years. plant height, number of leaves per plant, and bulb weight were not affected by treating seeds with the Bacillus isolates. Bulb neck diameter of the cultivar Autumn Spice was significantly reduced by two isolates in both seasons.     

Morphological and biochemical responses of selected germplasm of tobacco to soil inoculation with Pythium aphanidermatum

The effect of inoculation with Pythium aphanidermatum was studied on total phenol (TP), salicylic acid (SA), chlorophylls and carotenoid contents of leaves and plant growth characteristics of five tobacco cultivars, namely RK-10 P3, RK-12 P3, RK-13 P4, RK-18 P8 and RK-26 P3, to assess cultivar response at biochemical and morphological levels. Root rot measured at 0–5 scale was 2.66 on cv. RK-10 P3, followed by 2. 33 on cv. RK-18 P8, 1.33 on cv. RK-26 P3 and 1.0 on cv. RK-13 P4. The cv. RK-12 P3 did not develop measurable root rot. The rhizosphere population of root rot fungus increased over time, being highest on the cv. RK-10 P3 (P ≤ 0.001), followed by cvs. RK-18 P8, RK-26 P3, RK-13 P4 and RK-12 P3. Inoculation with the fungus resulted in 5% (cv. RK-10 P3), 10.3% (cv. RK-18 P8, P ≤ 0.05), 10.9% (cv. RK-26 P3, P ≤ 0.05), 16.4% (cv. RK-13 P4, P ≤ 0.01) and 41.5% (cv. RK-12 P3, P ≤ 0.001) increase in the TP content of leaves. SA concentration in tobacco leaves increased marginally (0.8%–3%) in cvs. RK-10 P3, RK-18 P8 and RK-26 P3, but considerably (16%–17%, P ≤ 0.01) in cv. RK-13 and RK-12 P3 in comparison to uninoculated plants. Total chlorophyll content of leaves in response to inoculation with P. aphanidermatum decreased by 27% and 23% in tobacco cvs. RK-10 P3 and RK-18 P8 (P ≤ 0.001) and 17.6 (P ≤ 0.01) and 10.6% (P ≤ 0.05) in cv. RK-26 P3 and RK-13 P4, respectively. Reduction in chlorophylls a and b was 20% and 15% in cv. RK-10 P3 and 20% and 11% in cv. RK-18 P8. Total carotenoid contents of tobacco leaves decreased significantly in cvs. RK-10 P3 and RK-18 P8 (P ≤ 0.05). Significant and greater decrease in plant growth variables was recorded in the cultivars in which increase in TP and SA was lower and decrease in chlorophyll and carotenoids was greater. This study has revealed that greater synthesis of TP and SA may provide resistance in tobacco plants against P. aphanidermatum. The cv. RK-12 P3, in which greatest increase in the SA (17%) and TP (41.5%) was recorded, did not exhibit a significant decrease in plant growth variables and leaf pigments (P ≤ 0.05).     

Microbial consortium-mediated reprogramming of defence network in pea to enhance tolerance against Sclerotinia sclerotiorum

Aims: To evaluate the potentiality of three rhizosphere microorganisms in suppression of Sclerotinia rot in pea in consortia mode and their impact on host defence responses. Methods and Results: Pseudomonas aeruginosa PJHU15, Trichoderma harzianum TNHU27 and Bacillus subtilis BHHU100 from rhizospheric soils were selected based on compatibility, antagonistic and plant growth promotion activities. The microbes were used as consortia to assess their ability to trigger the phenylpropanoid and antioxidant activities and accumulation of proline, total phenol and pathogenesis‐related (PR) proteins in pea under the challenge of the soft‐rot pathogen Sclerotinia sclerotiorum. The triple‐microbe consortium and single‐microbe treatments showed 1·4–2·3 and 1·1–1·7‐fold increment in defence parameters, respectively, when compared to untreated challenged control. Activation of the phenylpropanoid pathway and accumulation of total phenolics were highest at 48 h, whereas accumulation of proline and PR proteins along with activities of the antioxidant enzymes was highest at 72 h. Conclusions: The compatible microbial consortia triggered defence responses in an enhanced level in pea than the microbes alone and provided better protection against Sclerotinia rot. Significance and Impact of the Study: Rhizosphere microbes in consortium can enhance protection in pea against the soft‐rot pathogen through augmented elicitation of host defence responses.     

Differential expression of pathogenesis-related proteins and defense enzymes in banana: interaction between endophytic bacteria,Banana bunchy top virus and Pentalonia nigronervosa

Banana bunchy top disease caused by Banana bunchy top virus is the most serious viral disease of banana and plantain worldwide. The virus is transmitted by the aphid vector Pentalonia nigronervosa in a persistent manner. This paper deals with the effect of the interaction between plant growth promoting endophytic bacteria, Banana bunchy top virus, and the banana aphid Pentalonia nigronervosa in the expression of Pathogenesis-related proteins (PR-proteins) and defense enzymes in banana. The existence of virus in the aphids was confirmed by ELISA, DIBA and PCR. PCR could amplify 1100-bp replicase gene of BBTV from viruliferous aphids. A significant increase in the enzymatic activity of all measured PR proteins and defense enzymes, as compared to control plants, was seen in the plants inoculated with endophytic bacteria and challenged with viruliferous aphids. Native gel electrophoresis revealed expression of more isoforms of PR proteins viz., peroxidase and chitinase in the banana plants challenged with mixtures of plant growth promoting endophytic bacteria and viruliferous aphids. Enhanced activity of a PR-2 protein viz., β-1,3-glucanase was also noticed in the viruliferous aphids infested plants. Some of the defense-related enzymes viz., Polyphenol oxidase and Phenylalanine ammonia lyase and phenolic compounds were also upregulated, up to 5 days after aphid infestation and thereafter there was a reduction in the enzymatic activity. Thus, there exist a differential accumulation of PR proteins and defense-related enzymes, when there is tri-tropic interaction between endophytic bacteria, virus, and insect and the role of the endophytic bacteria in the defense mechanisms against insect pests needs to be elucidated.     

Biocontrol of <Emphasis Type="Italic">Pythium</Emphasis> damping-off in cucumber by arbuscular mycorrhiza-associated bacteria from the genus <Emphasis Type="Italic">Paenibacillus</Emphasis>

The Pythium biocontrol features of 17 Paenibacillus strains, all previously isolated from the rhizosphere, hyphosphere or bulk soil from mycorrhizal and non-mycorrhizal cucumber plants, were examined using a cucumber seedling emergence bioassay. Thirteen strains – four strains of Paenibacillus polymyxa, eight strains of P. macerans and one strain of Paenibacillus sp. – significantly increased the percentage of seedling emergence of seeds inoculated with agar plugs of Pythium aphanidermatum FC42. Overall, the efficacy of Pythium biocontrol did not seem to differ between isolates of Paenibacillus originating from either mycorrhizal or non-mycorrhizal systems. No strains significantly reduced the damping-off incidence caused by the aggressive isolate Pythium sp. B5. Two strains of P. macerans not only reduced the incidence of pre-emergence damping-off by 73%, but they also counteracted the plant growth-depressing effect of P. aphanidermatum FC42, so that 68–82% of the emerged seedlings remained healthy 7 days after sowing. Two strains of P. macerans and one strain of P. polymyxa also significantly increased the percentage of seedling emergence following inoculation with approximately 10⁵ zoospores of P. aphanidermatum FC42. There was no significant difference between the dry weight of three selected bacteria-inoculated and -uninoculated plants in the absence of Pythium; however, the dry weight of bacteria-inoculated plants was significantly higher than that of the uninoculated control plants with bacteria in the presence of P. aphanidermatum FC42.     

The Effect of Bacillus subtilis on in vitro Growth and Pathogenicity of Agrobacterium tumefaciens

Five isolates of Bacillus subtilis isolated from the soil, were found to be antagonistic to 6 isolates of Agrobacterium tumefaciens in vitro. Inoculation of B. subtilis in wounded castor bean plants 30 min before or simultaneous inoculation with A. tumefaciens resulted in excellent control of the crown gall symptoms on the host within 50 days of inoculation. Application of B. subtilis 30 min after inoculation with A. tumefaciens did not result in appreciable disease reduction. Treatment of the tested plants by B. subtilis did not induce any phytotoxic injury or growth retarding side effects. It appears that B. subtilis could potentially be incorporated for crown gall control. However, further tests are needed to test this biological control agent with other plant species especially fruits, nuts and vine nursery stock.     

Suppression of sugar beet damping-off caused by Rhizoctonia solani using bacterial and fungal antagonists

Rhizoctonia damping-off caused by Rhizoctonia solani Kühn, is one of the most damaging sugar beet diseases. It causes serious economic damage wherever sugar beets are grown. Biological control is an efficient and environmentally friendly way to prevent damping-off disease. Suppression of damping-off disease caused by R. solani was carried out by four isolates of Bacillus subtilis (Ehrenberg) Cohn as well as three isolates of each of Trichoderma harzianum Rifai and Trichoderma hamatum (Bonord.) Bainier. The effect of Bacillus and Trichoderma isolates against R. solani was investigated in vitro and tested on sugar beet plants under greenhouse conditions. Isolates of Bacillus and Trichoderma were able to inhibit the growth of R. solani in dual culture. Furthermore, Trichoderma isolates gave high antagonistic effect than isolates of B. subtilis. Under greenhouse conditions, coating seeds by T. harzianum and B. subtilis separately, reduced seedling damping-off significantly. However, applications of T. harzianum increased the percentage of surviving plants more than B. subtilis in comparison to control. The obtained results indicate that T. harzianum and B. subtilis are very effective biocontrol agents that offer potential benefit in sugar beet damping-off and should be harnessed for further biocontrol applications.     

Induced Resistance in the Biocontrol of Pythium aphanidermatum by Pseudomonas spp. on Cucumber

Plants of Cucumis sativus cv. Corona were grown in rockwool, with the root systems split into two separate pots. B pots were treated with water or a cell suspension of Pseudomonas corrugata isolate 13 or P. fluorescens biovar C isolate 15, two rhizosphere isolates effective as biocontrol agents against Pythium aphanidermatum. The P pot was treated with water or a suspension of zoospores of P. aphanidermatum applied at the same time (simultaneous treatment) or 1 week after B pot treatments. Most of the bacterial treatments reduced disease incidence and disease severity. Simultaneous treatment with isolate 15 increased shoot dry weight, leaf area, and number of fruit of inoculated plants in one trial. Some treatments with isolate 13 or 15 also increased root volume or root dry weight in B or P pots, compared to the inoculated plants where the B pot was treated with water only (Pythium control). Lower population densities of P. aphanidermatum in P pots were detected in some treatments to which bacteria were applied to the B pot, but only in the early stages of the experiment. This is the first report of systemic-induced resistance against a root pathogen in cucumber obtained by application of Pseudomonas spp. to a root system spatially separated from the pathogen-inoculated root.     

Mixed PGPR consortium: an effective modulator of antioxidant network for management of collar rot in cauliflower

Abstract

Sclerotinia sclerotiorum is a cosmopolitan fungal pathogen causing stem and collar watery soft rot of cauliflower. Previous management of this disease with chemical pesticides caused hazardous results which lead to use of more eco-friendly microbial approaches. In the present study, consortia of Trichoderma harzianum TNHU27 and Pseudomonas aeruginosa PJHU15 were assessed for their ability in controlling Sclerotinia rot in cauliflower. The seedlings of cauliflower were challenged singly and in consortium with these two compatible microbes. The plants were evaluated upon challenge inoculation with S. sclerotiorum for changes in total phenolic content, the activity of defense and antioxidative enzymes. The microbial consortium comprising of T. harzianum and P. aeruginosa significantly enhanced the defense responses of the plant in comparison to pathogen challenged and unchallenged control. The study elucidates that plant beneficial microbes in the consortium may provide superior protection by induction of faster and enhanced defense responses in comparison to unchallenged and single microbe challenged plants under pathogen challenged conditions.     

Molecular characterisation of Fusarium oxysporum causing rot diseases in small cardamom (Elettaria cardamomum Maton)

Incidence of root rot and foliar yellowing, rhizome rot, panicle wilt and stem rot diseases of small cardamom (Elettaria cardamomum Maton) are caused by Fusarium oxysporum Schlecht., and were surveyed in the high ranges of Idukki district, Kerala during 2010–2011. The diseases were noticed in different areas to varying degrees. Root rot was found to be most severe, followed by pseudostem rot, rhizome rot and panicle wilt. The Fusarium infections were prevalent throughout the year (January–December) and varied from 1.5 to 10.6%. Even though the pathogen was isolated from different plant parts, during pathogenicity studies, all the isolates could cross-infect other plant parts too. Twenty different isolates of F. oxysporum were obtained from diseased samples, and five morphologically distinct isolates were analysed with Randomly Amplified Polymorphic DNA (RAPD) markers to study the genetic variability, if any, among them. PCR amplification of total genomic DNA with random oligonucleotide primers generated unique banding patterns, depending upon primers and isolates. Nine oligunucleotide primers were selected for the RAPD assays, which resulted in 221 bands for the five isolates of F. oxysporum. The number of bands obtained was entered into an NTSYS, and the results showed moderate genetic variability among F. oxysporum isolates causing root rot, rhizome rot, panicle wilt and pseudostem rot, collected from different locations. The dendrogram of different isolates into groups resulted in one major cluster at 0.61 similarity index comprising of four isolates (CRT 3, CRR 3, CPW 2 and CSR 1) and one isolate (CRT 5) formed in a separate cluster. Among the five isolates of F. oxysporum, CRT 5 was entirely different from the other four isolates. The isolates also differ according to the geographical area, as revealed from the genetic variability observed in different root rot isolates (CRT 3 and CRT 5). It is inferred that despite moderate variability, F. oxysporum, infecting small cardamom in Idukki district of Kerala, consists of a single clonal lineage.