Plant–bacteria interactions in the removal of pollutants

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Highlights► Rhizobacteria degrade a wide range of pollutants and efficiently colonize plant roots. ► Plants have an effect on the selection of their own rhizospheric microorganisms. ► Catabolic pathways can be induced by natural secondary plant products. ► Horizontal gene transfer has an important role in bioremediation. ► Manipulation of plant/microbe interactions could improve rhizoremediation outcomes.     

Plant–soil feedbacks and the coexistence of competing plants

Plant–soil feedbacks can have important implications for the interactions among plants. Understanding these effects is a major challenge since it is inherently difficult to measure and manipulate highly diverse soil communities. Mathematical models may advance this understanding by making the interplay of the various processes affecting plant–soil interaction explicit and by quantifying the relative importance of the factors involved. The aim of this paper is to provide a complete analysis of a pioneering plant–soil feedback model developed by Bever and colleagues (J Ecol 85: 561–573, 1997; Ecol Lett 2: 52–62, 1999; New Phytol 157: 465–473, 2003) to fully understand the range of possible impacts of plant–soil feedbacks on plant communities within this framework. We analyze this model by means of a new graphical method that provides a complete classification of the potential effects of soil communities on plant competition. Due to the graphical character of the method, the results are relatively easy to obtain and understand. We show that plant diversity depends crucially on two key parameters that may be viewed as measures of the intensity of plant competition and the direction and strength of plant–soil feedback, respectively. Our analysis provides a formal underpinning of earlier claims that plant–soil feedbacks, especially when they are negative, may enhance the diversity of plant communities. In particular, negative plant–soil feedbacks can enhance the range of plant coexistence by inducing competitive oscillations. However, these oscillations can also destabilize plant coexistence, leading to low population densities and extinctions. In addition, positive feedbacks can allow locally stable forms of plant coexistence by inducing alternative stable states. Our findings highlight that the inclusion of plant–soil interactions may fundamentally alter the predictions on the structure and functioning of above-ground ecosystems. The scenarios presented in this study can be used to formulate hypotheses about the ways soil community effects may influence plant competition that can be tested with empirical studies. This will advance our understanding of the role of plant–soil feedback in ecological communities.     

Farewell to the Lose–Lose Reality of Policing Plant Imports

In an age of free international shipments of mail-ordered seeds and plants, more policing will not stop the global migration of hitchhiking pests. The solution is in a preemptive response based on an internationally coordinated genomic deployment of global biodiversity in the largest breeding project since the “Garden of Eden.” This plan will enrich the narrow genetic basis of annual and perennial plants with adaptations to changing environments and resistances to the pests of the future.

“Plan for what is difficult while it is easy; do what is great while it is small.”—Sun Tzu, The Art of War

When 182 countries become party to a common cause, it is reason to rejoice. Such an opportunity was provided when the Food and Agriculture Organization of the United Nations (FAO) approved the International Plant Protection Convention (IPPC) on December 6, 1951, with the objective of developing and implementing international phytosanitary standards to reduce the risks associated with the spread of plant pests to agriculture and natural ecosystems [1]. Over the years, the IPPC has been amended to enforce safer trade of plants by preventing the entry and spread of new pests. This led to the establishment of dedicated government agencies, usually associated with the ministries of agriculture, which are responsible for inspecting and policing against the entry of pests. These agencies have grown tremendously over the years because their noble mission is simply to explain to the “want to do good” elected officials who are responsible for the allocation of funds. However, the IPPC is currently implementing a losing defensive strategy, for which a scientific alternative based on a broad view of our interconnected global reality is presented below.     

Common Physical Errors in the Description of Water Fluxes in the Soil–Plant–Atmosphere System

Widely accepted concepts and definitions concerning the driving forces of upward water fluxes, such as osmotic pressure (OP) and water potential (WP), were analyzed in the soil–plant–atmosphere system. It is emphasized that, at present, there are no physically correct definitions of the mentioned parameters, because such a concept as the heat pressure of molecules in a liquid has not been introduced. Physical definitions of OP and WP are presented. It is demonstrated that WP is not a driving force for water fluxes at the water–vapor interface. The fundamental difference in mechanisms of diffusion fluxes and active transport across the biological membranes is analyzed. The biological specificity of driving forces at the soil–root and leaf–air interfaces is described.     

Plant–Environment Interactions in the Low Arctic Torngat Mountains of Labrador

Ecosystems - The eastern Canadian Subarctic and Arctic are experiencing significant environmental change with widespread implications for the people, plants, and animals living there. In this...     

Plant–pathogen interactions: will the understanding of common mechanisms lead to the unification of concepts?

Plant-pathogen interactions are still classically described using concepts that make a distinction between qualitative and quantitative aspects linked to these concepts. This article first describes these aspects, using the terminology associated with them. It then presents some recent experimental observations that demonstrate that such concepts share either common or closely related mechanisms at the cellular and molecular levels. The emergence of a more global vision and understanding of the interactions between plants and their parasites is discussed.     

Cell Cycle–Mediated Regulation of Plant Infection by the Rice Blast Fungus

To gain entry to plants, many pathogenic fungi develop specialized infection structures called appressoria. Here, we demonstrate that appressorium morphogenesis in the rice blast fungus Magnaporthe oryzae is tightly regulated by the cell cycle. Shortly after a fungus spore lands on the rice (Oryza sativa) leaf surface, a single round of mitosis always occurs in the germ tube. We found that initiation of infection structure development is regulated by a DNA replication-dependent checkpoint. Genetic intervention in DNA synthesis, by conditional mutation of the Never-in-Mitosis 1 gene, prevented germ tubes from developing nascent infection structures. Cellular differentiation of appressoria, however, required entry into mitosis because nimA temperature-sensitive mutants, blocked at mitotic entry, were unable to develop functional appressoria. Arresting the cell cycle after mitotic entry, by conditional inactivation of the Blocked-in-Mitosis 1 gene or expression of stabilized cyclinB-encoding alleles, did not impair appressorium differentiation, but instead prevented these cells from invading plant tissue. When considered together, these data suggest that appressorium-mediated plant infection is coordinated by three distinct cell cycle checkpoints that are necessary for establishment of plant disease.     

Plant–Soil Feedbacks Contribute to the Persistence of Bromus inermis in Tallgrass Prairie

As invasive plants become a greater threat to native ecosystems, we need to improve our understanding of the factors underlying their success and persistence. Over the past 30 years, the C₃ nonnative plant Bromus inermis (smooth brome) has been spreading throughout the central grasslands in North America. Invasion by this grass has resulted in the local displacement of natives, including the tallgrass species Panicum virgatum (switchgrass). To determine if factors related to resource availability and plant–soil interactions were conferring a competitive advantage on smooth brome, field plots were set up under varying nitrogen (N) levels. Plots composed of a 1:1 ratio of smooth brome and switchgrass were located in a restored tallgrass prairie and were randomly assigned one of the following three N levels: (a) NH₄NO₃ added to increase available N, (b) sucrose added to reduce available N, and (c) no additions to serve as control. In addition, soil N status, soil respiration rates, plant growth, and litter decomposition rates were monitored. Results indicate that by the 2nd year, the addition of sucrose significantly reduced available soil N and additions of NH₄NO₃ increased it. Further, smooth brome had greater tiller density, mass, and canopy interception of light on N-enriched soils, whereas none of these characteristics were stimulated by added N in the case of switchgrass. This suggests that smooth brome may have a competitive advantage on higher-N soils. Smooth-brome plant tissue also had a lower carbon–nitrogen (C:N) ratio and a higher decomposition rate than switchgrass and thus may cycle N more rapidly in the plant–soil system. These differences suggest a possible mechanism for the persistence of smooth brome in the tallgrass prairie: Efficient recycling of nutrient-rich litter under patches of smooth brome may confer a competitive advantage that enables it to persist in remnant or restored prairies. Increased N deposition associated with human activity and changing land use may play a critical role in the persistence of smooth brome and other N-philic exotic species.     

Plant–microbe interactions as drivers of ecosystem functions relevant for the biodegradation of organic contaminants

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Prey Habitat Location by the Cassava Mealybug Predator Exochomus flaviventris: Olfactory Responses to Odor of Plant, Mealybug, Plant–Mealybug Complex, and Plant–Mealybug–Natural Enemy Complex

Exochomus flaviventris Mader is considered to be the most active predator of the cassava mealybug Phenacoccus manihoti Matile–Ferrero in Central Africa. The response of experienced gravid female coccinellids to the odor of cassava plant (var. Zanaga), unparasitized mealybugs, plant–mealybug complex with or without feeding prey (parasitized or not), and plant–mealybug complex with or without conspecific coccinellids was investigated in a Y-tube olfactometer. The odor of uninfested cassava plants was not more attractive than clean air. Dual-choice tests revealed that mealybug-infested plants were preferred to mealybugs alone and mealybug-damaged plants and were the major sources of volatiles that attract females coccinellids to the microhabitat of its prey. The emission of volatile chemicals did not appear to be limited to the infested parts of the plant but did occur systemically throughout the plant. The presence of conspecific coccinellid larvae or adult males did not modify the attractiveness of the mealybug-infested plants. However, when an infested plant with conspecific predator females (alone or with conspecific males) was compared to an infested plant or infested plant with conspecific males, E. flaviventris females showed a preference for the last two sources of odor. The uninfested plant with conspecific males was also preferred to the uninfested plant with conspecific females. In addition, the odor of conspecific males was preferred over that of conspecific females. Female predators preferred the plant infested with unparasitized mealybugs over the plant infested with mealybugs previously parasitized. These results showed that E. flaviventris females use herbivore-induced plant volatiles during foraging and can detect via olfaction the presence of conspecific gravid females and parasitized prey, thus assessing patch suitability from a distance.     

Plant Growth–Promoting Bacteria Facilitate the Growth of the Common Reed Phragmites australisin the Presence of Copper or Polycyclic Aromatic Hydrocarbons

To test whether plant growth–promoting bacteria might be useful in facilitating the growth of Phragmites australis, the common reed, in the presence of metals and organic compounds, P. australis seeds were treated with plant growth–promoting bacteria. The bacterium Pseudomonas asplenii AC was genetically transformed to express a bacterial gene encoding the enzyme 1-aminocyclopropane-1-carboxylate deaminase, and both the native and transformed bacteria were tested in conjunction with P. australis. Inoculation of seeds, which were subsequently grown in the presence of copper or creosote, with transformed P. asplenii AC significantly increased seed germination. Moreover, the addition of either native or transformed P. asplenii AC to P. australis seeds enabled the plants (shoots and roots) to attain a greater size than noninoculated plants after growth in soil in the presence of either copper or creosote.     

Invasibility of Nectarless Flowers in Plant–Pollinator Systems

This paper considers plant–pollinator systems in which plants are divided into two categories: The plants that secret a substantial volume of nectar in their flowers are called secretors, while those without secreting nectar are called nonsecretors (cheaters). The interaction between pollinators and secretors is mutualistic, while the interaction between pollinators and nonsecretors is parasitic. Both interactions can be described by Beddington–DeAngelis functional responses. Using dynamical systems theory, we show global dynamics of a pollinator–secretor–cheater model and demonstrate mechanisms by which nectarless flowers/nonsecretors can invade the pollinator–secretor system and by which the three species could coexist. We define a threshold in the nonsecretors’ efficiency in translating pollinator–cheater interaction into fitness, which is determined by parameters (factors) in the systems. When their efficiency is above the threshold, non-secretors can invade the pollinator–secretor system. While the nonsecretors’ invasion often leads to their persistence in pollinator–secretor systems, the model demonstrates situations in which the non-secretors’ invasion can drive secretors into extinction, which consequently leads to extinction of the nonsecretors themselves.     

Microevolution of Nodule Bacteria upon Generation of Mutants with Altered Survival in the Plant–Soil System

Simulation of cyclic processes in the plant–soil system was used to analyze the effects of factors responsible for the population dynamics of rhizobia on generation of mutants with changedex planta viability. Rhizobial evolution in a system of ecological niches (soil, rhizosphere, nodules) was described with recurrent equations. Computer experiments were carried out with parameters determining the mutation pressure, selection, and amplitude of the population wave arising in soil on the release of bacteria from nodules and the rhizosphere. Analysis of the model showed that (1) mutants with enhanced ex planta viability do not completely replace the parental strain and (2) mutants with impaired ex planta viability may be fixed in the population. The maintenance of genotypes subject to elimination from the soil and rhizosphere by Darwinian selection was associated with frequency-dependent selection (FDS), which is effective in competition for nodulation. The FDS index was proposed to characterize FDS pressure and was shown to determine the population polymorphism for adaptive traits. An increase in population wave amplitude proved to increase the fixation level (the proportion in the limiting state of the system) of mutants with enhanced viability and to decrease it in mutants with low viability. The results obtained with the model agreed with the data that, in edaphic stress, rhizobial populations remain highly polymorphic, which is associated with the maintenance of sensitive strains. The simulation procedure may be employed in estimating the genetic consequences of introduction of modified rhizobial strains in the environment.