Surface-induced aggregation of ferritin. Kinetics of adsorption to a hydrophobic surface

The adsorption of ferritin from a water solution to a hydrophobic methylised quartz surface was studied by transmission electron microscopy, allowing direct examination of the iron core of the molecule without further preparation. The initial adsorption was seen to result in small clusters of molecules, the number of sites/cm(2) being concentration dependent. The adsorption process continued via cluster growth. The rate of adsorption increased and the process became mass transport limited. The clusters formed initially had low fractal dimensions (D approximately 1.0) and a coordination number, cn of 2.6-2.8, which increased with time. These clusters were abruptly restructured at a coordination number of 3.5, and the apparent rate of adsorption decreased during the reorganisation of the adsorbed layer. Finally, an equilibrium level was reached which was stable for at least 24 h. The distribution of ferritin molecules at equilibrium was in clusters with a fractal dimension of D = 1.14 +/- 0.16 and D= 1.33 +/- 0.08, respectively, for ferritin concentrations in the bulk of 10 and 100 microg/ml. Rinsing of adsorbed ferritin layers with buffered salt solution resulted in a rapid transient condensation of the clusters, but the net dissociation of protein was slow with the rate of dissociation being proportional to the logarithm of time. The condensed clusters were slowly restructured to linear polymers of ferritin molecules with a coordination number of 1.9 after 24 h of rinsing. The dissociation of protein molecules continued slowly for more than 3 days of rinsing. The results of the present study indicate that the rate of protein adsorption and desorption is strongly related to the supramolecular structure of the adsorbed protein film. Dense clusters of protein are not stable and this phenomenon may explain the formation of a dynamic equilibrium in spite of the fact that protein adsorption to a solid phase may appear to be practically irreversible.     

Nonlinear kinetics of ferritin adsorption.

The adsorption of ferritin at a methylized quartz surface was measured with off-null ellipsometry and transmission electron microscopy. An initial lag-phase was seen, followed by an accelerating adsorption leading to mass transport limitation of the reaction. The rate of adsorption then decreased at a surface concentration far below monolayer coverage, and a continuously decreasing rate of binding was seen. The slope of the binding rate was linear with the logarithm of time (fractal kinetics). The adsorbed ferritin molecules were distributed in clusters as seen by transmission electron microscopy. Clusters grown during the mass transport limited adsorption had crystalline structure at short range and low fractal dimensions (df = 0.89) over long range. Clusters grown during adsorption with fractal kinetics showed random structure at short range and a high fractal dimension df = 1.86 over all ranges. These findings indicate some new important mechanisms responsible for the complex kinetics of macromolecular reactions at solid-liquid interfaces. The results are discussed in relation to recently developed theories of self-organized criticality.     

Computer simulation of surface-induced aggregation of ferritin.

Models are presented describing the transient mass-transport limited adsorption and cluster growth of ferritin at a solid surface. Computer simulations are carried out on a hexagonal lattice using a computer model that can be characterized as a two-dimensional stochastic cellular automaton allowing different rules regarding association, lateral interaction and dissociation to be incorporated in the model. The fractal dimensions of individual clusters were extracted from simulated aggregates and for similar rules found to be consistent with literature values on reversible diffusion-limited aggregation in two dimensions. The distribution of clusters versus free surface were shown to be affected by neighbor-dependent association probability. Low fractal dimension clusters were generated by a combination of strong lateral cohesion and neighbor-dependent dissociation to the bulk. By comparing computer simulated aggregation to experimental electron micrographs of adsorbed ferritin layers it is suggested that neighbor-dependent association, neighbor-dependent dissociation and lateral interactions are important factors in the complex dynamics of adsorbed protein layers.     

Mobility of adsorbed proteins: a Brownian dynamics study

We simulate the adsorption of lysozyme on a solid surface, using Brownian dynamics simulations. A protein molecule is represented as a uniformly charged sphere and interacts with other molecules through screened Coulombic and double-layer forces. The simulation starts from an empty surface and attempts are made to introduce additional proteins at a fixed time interval that is inversely proportional to the bulk protein concentration. We examine the effect of ionic strength and bulk protein concentration on the adsorption kinetics over a range of surface coverages. The structure of the adsorbed layer is examined through snapshots of the configurations and quantitatively with the radial distribution function. We extract the surface diffusion coefficient from the mean square displacement. At high ionic strengths the Coulombic interaction is effectively shielded, leading to increased surface coverage. This effect is quantified with an effective particle radius. Clustering of the adsorbed molecules is promoted by high ionic strength and low bulk concentrations. We find that lateral protein mobility decreases with increasing surface coverage. The observed trends are consistent with previous theoretical and experimental studies.     

Thermal and Structural Stability of Adsorbed Proteins

Experimental evidence suggests that proteins adsorbed to hydrophobic surfaces at low coverages are stabilized relative to the bulk. For larger coverages, proteins unfold and form β-sheets. We performed computer simulations on model proteins and found that: 1), For weakly adsorbing surfaces, unfolded conformations lose more entropy upon adsorption than folded ones. 2), The melting temperature, both in the bulk and at surfaces, decreases with increasing protein concentration because of favorable interprotein interactions. 3), Proteins in the bulk show large unfolding free energy barriers; this barrier decreases at stronger adsorbing surfaces. We conjecture that typical experimental temperatures appear to be below the bulk melting temperature for a single protein, but above the melting temperature for concentrated protein solutions. Purely thermodynamic factors then explain protein stabilization on adsorption at low concentrations. However, both thermodynamic and kinetic factors are important at higher concentrations. Thus, proteins in the bulk do not denature with increasing concentration due to large kinetic barriers, even though the aggregated state is thermodynamically preferred. However, they readily unfold upon adsorption, with the surface acting as a heterogeneous catalyst. The thermal behavior of proteins adsorbed to hydrophobic surfaces thus appears to follow behavior independent of their chemical specificity.     

Discontinuous formation and desorption of clusters during particles adsorption at surfaces

A theoretical model was derived to describe the discontinuous formation and desorption of clusters during particle adsorption at surfaces. Two steps were investigated: (1) time-dependent adsorption, where we found that the initial slope and the limiting magnitude of an adsorption isotherm depend on the clusters' distribution. A higher magnitude of both the adsorption and desorption rates appear to contract the time scale and hence increase the initial slope. Decreasing the geometrical parameter, q, which represents the shape of an adsorbed cluster, enhances the growth of large clusters on the surface. (2) A concentration dependence model shows that the number of adsorbed molecules increases with increases in the value of n (nucleation capacity). Furthermore, higher rates of adsorption provide steeper initial slopes (higher affinity of, molecules to surface). Decreasing q from 2 to 1, i.e. from a circular to a linear cluster formation, slightly decreases the magnitude of the isotherms.     

Anionic sites on the envelope of Salmonella typhimurium mapped with cationized ferritin

Binding of either ferritin (F) or cationized ferritin (CF) was employed to indicate the surface charge of the envelope of mainly two Salmonella typhimurium strains (395 MR10, a Rd-mutant, and LT2-M1, a UDP-galactose-4-epimerase-less mutant). Lowering the pH from 7 to 4 decreased binding of CF, but increased binding of F. At low concentrations, the distribution of CF on S. typhimurium 395 MR10 was in general random, with individual ferritin molecules often forming clusters of two or three particles. At ionic strengths of 0.25M NaCl, ferritin produced distinctive, larger clusters at relatively few sites (10-50/cell). Addition of galactose to cultures of growing S. typhimurium, LT2-M1 reduced the binding of CF in 1-10 min, and numerous ferritin-free areas became visible. Possibly this is caused by a pluri-focal reduction in the negative cell surface charge that was generated at the multiple sites of export of new, smooth-type lipopolysaccharide, which either exhibits lesser charge or masks a preexisting surface charge. Dividing cells may show unequal charges on the prospective daughter cells, and the difference in the capacity for ferritin adsorption of both daughter cells is sharply separated at the division site.     

Enzyme-substrate interaction in lipid monolayers. II. Binding and activity of lipase in relation to enzyme and substrate concentration and to other factors.

With the limited stirring procedure used in the present work, substrate and enzyme together form a segregated and well-defined system on the surface. The lipase molecules responsible for the lipolysis are only those that are adsorbed on the glyceride monolayer. After a study of the stirring procedure, two series of systematic experiments were done: a) the bulk concentration of the enzyme was varied with different constant surface concentrations of the substrate, and b) the surface concentration of the substrate was varied with different constant bulk concentrations of the enzyme. The influence of the surface concentration of substrate on a) the rate of lipolysis, V,; b) the enzyme activity, a,; and c) the enzyme adsorption, Ze, were each determined by a different procedure. The values obtained verify the enzymic activity equation (a = V/Ze). The roles of other factors (Ca2+ ions, and pH) which govern the adsorption of the enzyme and its specific activity were also studied in preliminary experiments.     

Kinetics of adsorption of globular proteins at an air-water interface.

Adsorption of globular proteins at an air-water interface from an infinite stagnant medium was modeled as one-dimensional diffusion in a potential field. The interaction potential experienced by an adsorbing molecule consisted of contributions from electrostatic interactions, work done against the surface pressure to clear area at the interface in order to anchor the adsorbed segments, and the change in the free energy due to exposure of penetrated surface hydrophobic functional groups to air. The assumption of irreversible adsorption is employed in the present analysis. The energy barrier to adsorption, present at sufficiently large surface pressures, was found to be higher for smaller surface hydrophobicities, larger surface pressures, larger size molecules, and oblate orientation of an ellipsoidal molecule. Consequently, more adsorption occurred at larger surface hydrophobicities, smaller size molecules, and for prolate orientation of ellipsoidal molecules. The subphase concentration has been shown to be zero at short times, increasing with time at larger times, and eventually becoming close to the bulk concentration as a result of increasing energy barrier to adsorption. The predicted evolution of surface concentration with time for adsorption of lysozyme at an air-water interface agreed well with the experimental data of Graham and Phillips (1979a).     

Dynamic adsorption behavior of poly(3-hydroxybutyrate) depolymerase onto polyester surface investigated by QCM and AFM

Time-dependent adsorption behavior of poly(3-hydroxybutyrate) (PHB) depolymerase from Ralstonia pickettiiT1 on a polyester surface was studied by complementary techniques of quarts crystal microbalance (QCM) and atomic force microscopy (AFM). Amorphous poly(l-lactide) (PLLA) thin films were used as adsorption substrates. Effects of enzyme concentration on adsorption onto the PLLA surface were determined time-dependently by QCM. Adsorption of PHB depolymerase took place immediately after replacement of the buffer solutions with the enzyme solutions in the cell, followed by a gradual increase in the amount over 30 min. The amount of PHB depolymerase molecules adsorbed on the surface of amorphous PLLA thin films increased with an increase in the enzyme concentration. Time-dependent AFM observation of enzyme molecules was performed during the adsorption of PHB depolymerase. The phase response of the AFM signal revealed that the nature of the PLLA surface around the PHB depolymerase molecule was changed due to the adsorption function of the enzyme and that PHB depolymerase adsorbed onto the PLLA surface as a monolayer at a lower enzyme concentration. The number of PHB depolymerase molecules on the PLLA surface depended on the enzyme concentration and adsorption time. In addition, the height of the adsorbed enzyme was found to increase with time when the PLLA surface was crowded with the enzymes. In the case of higher enzyme concentrations, multilayered PHB depolymerases were observed on the PLLA thin film. These QCM and AFM results indicate that two-step adsorption of PHB depolymerase occurs on the amorphous PLLA thin film. First, adsorption of PHB depolymerase molecules takes place through the characteristic interaction between the binding domain of PHB depolymerase and the free surface of an amorphous PLLA thin film. As the adsorption proceeded, the surface region of the thin film was almost covered with the enzyme, which was accompanied by morphological changes. Second, the hydrophobic interactions among the enzymes in the adlayer and the solution become more dominant to stack as a second layer.     

Anionic sites on the envelope ofSalmonella typhimurium mapped with cationized ferritin

Binding of either ferritin (F) or cationized ferritin (CF) was employed to indicate the surface charge of the envelope of mainly twoSalmonella typhimurium strains (395 MR10, a Rd-mutant, and LT2-M1, a UDP-galactose-4-epimerase-less mutant). Lowering the pH from 7 to 4 decreased binding of CF, but increased binding of F. At low concentrations, the distribution of CF onS. typhimurium 395 MR10 was in general random, with individual ferritin molecules often forming clusters of two or three particles. At ionic strengths of 0.25M NaCl, ferritin produced distinctive, larger clusters at relatively few sites (10–50/cell). Addition of galactose to cultures of growingS. typhimurium, LT2-M1 reduced the binding of CF in 1–10 min, and numerous ferritinfree areas became visible. Possibly this is caused by a pluri-focal reduction in the negative cell surface charge that was generated at the multiple sites of export of new, smooth-type lipopolysaccharide, which either exhibits lesser charge or masks a preexisting surface charge. Dividing cells may show unequal charges on the prospective daughter cells, and the difference in the capacity for ferritin adsorption of both daughter cells is sharply separated at the division site.     

Adsorption behavior of a human monoclonal antibody at hydrophilic and hydrophobic surfaces

One aspiration for the formulation of human monoclonal antibodies (mAb) is to reach high solution concentrations without compromising stability. Protein surface activity leading to instability is well known, but our understanding of mAb adsorption to the solid-liquid interface in relevant pH and surfactant conditions is incomplete. To investigate these conditions, we used total internal reflection fluorescence (TIRF) and neutron reflectometry (NR). The mAb tested (“mAb-1”) showed highest surface loading to silica at pH 7.4 (~12 mg/m²), with lower surface loading at pH 5.5 (~5.5 mg/m², further from its pI of 8.99) and to hydrophobized silica (~2 mg/m²). The extent of desorption of mAb-1 from silica or hydrophobized silica was related to the relative affinity of polysorbate 20 or 80 for the same surface. mAb-1 adsorbed to silica on co-injection with polysorbate (above its critical micelle concentration) and also to silica pre-coated with polysorbate. A bilayer model was developed from NR data for mAb-1 at concentrations of 50–5000 mg/L, pH 5.5, and 50–2000 mg/L, pH 7.4. The inner mAb-1 layer was adsorbed to the SiO₂ surface at near saturation with an end-on” orientation, while the outer mAb-1 layer was sparse and molecules had a “side-on” orientation. A non-uniform triple layer was observed at 5000 mg/L, pH 7.4, suggesting mAb-1 adsorbed to the SiO₂ surface as oligomers at this concentration and pH. mAb-1 adsorbed as a sparse monolayer to hydrophobized silica, with a layer thickness increasing with bulk concentration - suggesting a near end-on orientation without observable relaxation-unfolding.     

A model for enhanced nucleation of protein crystals on a fractal porous substrate

The phenomenon of enhanced nucleation and crystallization of proteins on porous silicon (PS) is theoretically studied and explained. The PS layer is treated as a fractal structure, and a new mechanism of local supersaturation associated with the fractality is proposed. It is shown that the number of adsorbed molecules on a fragment with a fractal surface significantly exceeds that on one with flat surfaces. For a fractal PS surface, a local concentration of molecules that is sufficient for nucleation is possible inside and in the close vicinity of the pores, even when the average conditions in the bulk of the solution correspond to metastability. The wide distribution of fractal pore size is favorable for the crystallization of a wide range of macromolecules using the same sample. In addition, the PS technology is very flexible, allowing tailoring the pore size and concentration as well as the fractal properties to specific proteins by changing the fabrication conditions.     

Adsorption of thermomonospora fusca E(5) cellulase on silanized silica

The adsorption kinetics and dodeceyltrimethylammonium-bromide-mediated elution of Thermomonospora fusca E(5) cellulase were recorded in situ, at hydrophobic, silanized silica. Experiments were performed at different solution concentrations, ranging from 0.001 to 0.70 mg/mL. Plateau values of adsorbed mass generally increased with increasing solution concentration, with the adsorbed layer being only partially eluted by buffer. Treatment with surfactant removed more of the adsorbed enzyme in each case, with the remaining adsorbed mass varying little among experiments. Adsorption of E(5) into this nonremovable state was suggested to occur early in the adsorption process and continue until some critical surface concentration was reached. Beyond this critical value of adsorbed mass, adsorption progressed with the protein adopting more loosely bound states. Adsorption kinetic data were interpreted with reference to an adsorption mechanism allowing for irreversible adsorption into two dissimilar states. These states were distinguished by differences in occupied interfacial area, and binding strength, presumably a result of differences in structure. Comparison of the data to the kinetic model based on this mechanism showed that the fraction of adsorbed molecules present in the more tightly bound state decreased as adsorption occurred from solutions of increasing concentration. However, the absolute values of more tightly bound molecules were less dependent on adsorption conditions.     

Adsorption of viral matrix protein M1 in acidic medium

Adsorption of viral matrix protein M1 on the self-assembled monolayer of carboxyhexadecanthiol molecules simulating the surface of the cell membrane was studied by surface plasmon resonance refractometry technique. It was shown that in the acidic medium (pH 4.0) the fraction of irreversibly adsorbed protein increases with time. The protein formed a monolayer on the surface in concentration range from 50 to 500 nM. It was found that the amount of the adsorbed protein increased more than 3 times in this range. An important observation is that even at the lowest concentrations of the protein its molecules totally occupied the entire surface of the substrate, and a further protein addition did not lead to its further adsorption. To explain this phenomena, it was suggested that the number of M1 bonds with the surface increases during the adsorption, which leads to spreading of the protein molecules. Apparently, this effect is caused by the intrinsic disorder of the C-domain of the protein. It is hypothesized that the disassembly of the protein-lipid envelope of the influenza virus in the acidic medium does not result from desorption of the M1, but it is caused by the weakening of protein-protein bonds.     

Use of a fluorescence spectroscopy technique to study the adsorption of sodium dodecylsulfonate on liposomes

The fluorescent probe 2-(p-toluidinyl)-naphthalene-6-sodium sulfonate (TNS) was used to study the surface adsorption of sublytic concentrations of the anionic surfactant sodium dodecylsulfonate (C(12)-SO(3)) on phosphatidylcholine (PC) bilayers. The number of adsorbed molecules was quantified by determination of the electrostatic potential (psi(o)) of the bilayers. The abrupt decrease in the fluorescence intensity detected even 10 s after the surfactant addition and the slight fluorescence variations with time indicated that the surfactant adsorption was very fast and almost complete. For a given number of monomers adsorbed a linear dependence between the lipid and C12-SO3 concentrations was obtained, indicating similar adsorption mechanism regardless of the surfactant concentration. Hence, a monomeric adsorption is assumed even in systems with a C12-SO3 concentration above its CMC. In addition, this linear correlation allowed us to determine the surfactant/lipid molar ratios (Re) (inversely related to the C12-SO3 ability to be adsorbed on liposomes) and the bilayer/aqueous phase coefficients (K). The fact that the lowest values for Re were always reached after 10 s of incubation corroborates the rapid kinetics of the process. The decrease in the C12-SO3 partitioning (K) when the number of surfactant molecules exceeded 15000 was possibly due to the electrostatic repulsion between the free and the adsorbed monomers, which could hinder the incorporation of new monomers on the charged surface of liposomes.     

The adsorption of DNA in the mercury electrolyte interface. 3. Reaction of DNA in the mercury-electrolyte interface

The adsorption of deoxyribonucleic acid in the mercury-electrolyte interface was investigated. The effect of this adsorption on the differential capacity of the electrical double layer at the interface between a stationary mercury drop electrode (HMDE) and a buffered aqueous sodium chloride solution was measured. The dependences of this differential capacity on potential, time, and pH was studied in the presence of native and also of denatured DNA. These results were compared with the adsorption of model compounds and with the general theory of the adsorption of polymers. The structure of the adsorbed DNA molecules corresponds to an alternating arrangement of two-dimensional, totally adsorbed sequences and three-dimensional loops extending into the solution. The adsorbed sequences and loops consist of several segments with a specific free-energy change of adsorption. Essentially this energy determines the distribution of the segments between adsorbed sequences and loops. The absolute value of this energy change per segment is fairly large in the case of negatively charged poly-electrolyte DNA at the weakly positively charged interface near the electrocapillary maximum (ECM). The fraction of totally adsorbed segments is relatively large in this potential region. The more negative the potential the lower is the absolute value of free energy change of adsorption per segment. Under the conditions unfavorable for the adsorption, only a few segments can be adsorbed. Most of the segments of the adsorbed DNA molecules extend into the solution and therefore fairly high interface concentrations can be reached. Thus, the arrangement of DNA molecules in the electrode surface is changed when the potential is altered from values near the ECM to more negative ones. This change should produce the wave on the differential capacity curves at a little more negative potential than that of ECM. At a more negative potential, intermolecular interactions between the loops extending into the solution may occur. The adsorption tendency of the resulting associates is higher than that of the isolated molecules. Therefore the isolated molecules desorb at sufficient negatively charged interface producing a round wave while the associates stay adsorbed. At this potential it is impossible for native DNA to generate associates because they are formed from the isolated molecules. This explains the hysteresis loop of the curves of differential capacity vs. potential by using the HMDE. The desorption of the associates is indicated by a sharp wave at much more negative potential. For denatured DNA the associates arise from the very few isolated adsorbed molecules at this potential; therefore, no hysteresis loop occurs. The association constant of denatured DNA must be much higher than that of the native DNA. The reasons for this are discussed.     

Origin of calcium-induced minimum in bulk compressional modulus of lipid membranes. Configurational entropy of adsorbed Ca2+

Addition of Ca2+ to a dipalmitoylphosphatidylcholine lamellar system decreases the bulk compressional modulus (increases compressibility) of the membrane (S. Aruga, R. Kataoka and S. Mitaku, Biophys. Chem. 21 (1985) 265). The bulk modulus was reported to show a minimum value at 10 mM Ca2+ within the temperature range 20-45 degrees C. In the present report, the occurrence of this minimum in the bulk modulus is explained quantitatively as a result of fluctuation in the number of Ca2+ adsorbed onto the lipid bilayer surface. From this theory, the change in apparent molal volume of Ca2+ upon surface adsorption is estimated to be 5.7 cm3 mol-1, which appears to be a reasonable value. The number of adsorbed Ca2+ at the concentration where the bulk modulus assumes the minimum value is half of the number of allowable adsorption sites on lipid membranes. The configurational entropy of the adsorbed Ca2+ attains a maximum at the minimum point.     

Analytical modelling and simulation of gas adsorption effects on graphene nanoribbon electrical properties

Inspired by the realisation of the ability of graphene nanoribbon (GNR) based sensors to detect individual gas molecules, analytical approach based on the nearest neighbour tight-binding approximation is proposed to study the effect of gas adsorption on GNR electrical properties. Numerical calculations indicate that the electrical properties of the GNR are completely dependent on the adsorbed gas. Conductance as one of the most important electrical parameters as a sensing parameter is considered and analytically modelled. Additionally, gas adsorption effect on the conductance variation in the form of current-voltage characteristics is investigated which points out that gas adsorption dramatically influences electrical conductance of the GNR. Furthermore, to support the proposed analytical models, simulation study is carried out to investigate adsorption of O₂ and NH₃ gas molecules on the GNR surface. While, the charge transfer phenomenon that occurred as a result of molecular doping of the GNR is explored and the roll of band structure changes by adsorbents and their effects on the conductance and I-V characteristics of the GNRFET sensor is analysed. The comparison study with adopted experimental results is presented; also the I-V characteristics obtained from analytical modelling compared with the first principle calculations and close agreement is observed.     

Influence of polymer structure on adsorption behavior at solid–liquid interface by Monte Carlo simulation

Monte Carlo simulations for the adsorption of polymers including random copolymer, homopolymer, diblock copolymer and two kinds of triblock copolymers, respectively, in nonselective solvent at solid–liquid interface have been performed on a simple lattice model. The effect of polymer structure on adsorption properties was examined. In simulations, all polymeric molecules are modeled as self-avoiding linear chains composed of two segments A and B while A is attractive to the surface and B is non-attractive. It was found that for all polymers, the size distribution of various configurations is determined by the linked sequence of segments and the interaction energy between segment and surface. The results of simulation show that the adsorbed amount always increases with increasing bulk concentration but the adsorption layer thickness is mostly dependent on the adsorption energy at a fixed fraction of segments A. On the other hand, diblock copolymer has always the highest surface coverage and adsorbed amount, while random copolymers and homopolymers give generally the smallest surface coverage and adsorbed amount. It is shown that the sequence of polymer chains, i.e. molecular structure, is the most important factor in affecting adsorption properties at the same composition and interaction between segment and surface. The results also show that the adsorption behavior of random copolymers is remarkably different from that of block copolymers, but acting like homopolymer.