The Role of Polarization on 2D Plasmonic Crystals

In this paper, the polarization effects on surface plasmon resonance (SPR) in azimuthally rotated 2D square lattice plasmonic crystal (PCL) are reported. By controlling the polarization angle (α) of the incoming beam, the SPR coupling strength can be fully enhanced when optimized α is used for different momentum lattice vectors (x-, y-axis and diagonal direction). This value can be obtained by adjusting the polarization angle until the deepest dip in SPR reflectivity spectrum can be observed. This will lead to a much easier way for determining the optimum surface plasmon polariton excitation condition for each crystal momentum in 2D PCL.     

Alternation in colonization behaviors of Escherichia coli cells with rpoS or yggE deficiency on solid surfaces

Colonization on a solid surface is influenced by the cell surface appendages such as flagella and curli, of which expressions are regulated by rpoS gene encoding a sigma factor. In this study, we investigated the effect of rpoS or yggE (a rpoS‐related and stress‐responsive gene) deficiency on the colonization of Escherichia coli BW25113. Under a static condition, the deletion of rpoS or yggE induced 3.9‐ and 3.7‐fold higher colonization as compared to wild‐type cells, respectively, on the solid surfaces. However, under a liquid flow condition, only ΔyggE cells maintained the stable colonization on the surface, and the values of cell layer thickness and cell coverage on the surface were 17 and 9.2 times as high as those of wild‐type cells, respectively. Gene expression analyses revealed that the deletion of rpoS or yggE positively impacted the expressions of genes involved in flagellum formation. On the other hand, curli assembly was severely prohibited by the rpoS deficiency. Here, we proposed that the plentiful flagella on the ΔrpoS and ΔyggE cell surfaces facilitated mainly the colonization under the static condition. Meanwhile, curli existing on the ΔyggE cell surface played an important role in keeping stable cell attachment and developing attached colonies under the flow stress condition. Biotechnol. Bioeng. 2013; 110: 1050–1056. © 2013 Wiley Periodicals, Inc.     

Ecological indicators of nutrient enrichment, freshwater wetlands, Midwestern United States (U.S.)

Vegetation and soil indicators of nutrient condition were evaluated in 30 wetlands, 10 each in 3 Nutrient Ecoregions (NE) (VI-Corn Belt and Northern Great Plains, VII-Mostly Glaciated Dairy Region, IX-Temperate Forested Plains and Hills) of the Midwestern United States (U.S.) to identify robust indicators for assessment of wetland nutrient enrichment and eutrophication. Nutrient condition was characterized by surface water inorganic N (NH₄-N, NO₃-N) and P (PO₄-P) concentrations measured seasonally for 1 year, plant available and total soil N and P, and aboveground biomass, leaf N and P and species composition of emergent vegetation measured at the end of the growing season. Aboveground biomass, nutrient uptake and species composition were positively related to surface water NH₄-N (N) but not to PO₄-P or NO₃-N. Aboveground biomass and biomass of aggressive species, Typha spp. plus Phalaris arundinacea, increased asymptotically with surface water N whereas leaf P, senesced leaf N and senesced leaf P increased linearly with N. And, species richness declined with surface water N. Soil total P was positively related to surface water PO₄-P but it was the only soil indicator related to wetland nutrient condition. Individual regressions for each NE generally were superior to a single regression for all NEs. In NE VI (Corn Belt), few indicators were related to surface water N because of the high degree of anthropogenic disturbance (85% of the landscape is cleared) as compared to NEs VII and IX (24–53% cleared). Of the indicators evaluated, stem height (r² = 0.42 for all NEs, r² = 0.56 for NE VII + IX) and percent biomass of aggressive species, Typha spp. plus Phalaris, (r² = 0.46 for all NEs, r² = 0.54 for NE VII + IX), were the best predictors of wetland nutrient enrichment. Vegetation-based indicators are a promising tool for assessment of wetland nutrient condition but they may not be effective in NEs where landscape disturbance is intense and widespread.     

Mass brooding of the blue octocoral,Heliopora coerulea on a sedimented equatorial reef

The octocoral Heliopora coerulea is a gonochoric surface brooder. Although the species is common on shallow Indo-Pacific coral reefs, information on its reproductive biology is limited and spawning timings have only been reported from four locations. We report the first observations of surface brooding in H. coerulea on a sedimented equatorial reef. In April 2014, 46 and 26 brooding colonies were recorded, respectively, from reefs fringing the islands of Kusu and Lazarus in Singapore. The brooded coral larvae were tightly bound to inflated coral polyps, forming a dense white mat which blanketed the brown coral tissue. The inflated polyps also protruded from layers of sediment, which accumulated in colony crevices, such that the brooded larvae were elevated above the settled sediment. Our observations supplement existing knowledge on the reproductive timing of H. coerulea and highlight the adaptations that improve survival of this species on sediment-impacted reefs.     

The mechanism of pattern formation in the developing drosophila retina

The biological patterning of the drosophila retina in vivo has striking resemblance to liquid bubbles, in which the surface mechanics due to N-cadherin within a sub-group of retina cells can be mimicked by surface tension. In this work, the aggregating patterns were reasonably simplified into 2D clusters consisting of 2–6 identical bubbles confined within a shrinking boundary. By using a hybrid fluid dynamics model proposed for liquid foams, the aggregating process of 2–6 retina cells was studied. Assuming the minimal perimeter for patterning cells to be the condition of stability patterns, the stable converged patterns we simulated in this work are the same as the experimental observations. More importantly, a new pattern of 6 cells was obtained which was found physically more stable than the other two reported by Hayashi and Carthew^[1]. Aggregating perimeters of cells, i.e. the surface energy, showed a good linear fit with the cell numbers.     

Phellinus setifer sp. nov. andP. acontextus, two noteworthy polypores from temperate areas of Japan, with notes on their allies

Type examination ofTrametes gilvoides revealed that it is distinct from the fungus hitherto known asPhellinus gilvoides in Japan.Phellinus setifer sp. nov. is described for the Japanese materials. This species is characterized by effusedreflexed basidiocarps with strigose pileus surface, often dentate dissepiments, subulate setae, and cylindrical basidiospores.Phellinus acontextus, known only from the type material collected in Nepal, is newly reported from Japan. This species is characterized by sessile and often pendent basidiocarps with multisulcate pileus surface, very thin context, lack of setae, and dark-colored basidiospores. Cultural characters of the two species are also described.Phellinus acifer comb. nov. is proposed.Phellinus contiguus andP. ferreus are newly reported from Japan.     

纳木错湖水体固碳微生物数量、群落结构及其驱动因子

湖泊是微生物固碳的主要生态系统之一,但青藏高原湖泊水体固碳微生物群落的研究还罕见报道。以纳木错为例,采用定量PCR和克隆文库方法,研究湖水中cbbL ID基因丰度和固碳微生物群落组成,并分析其与环境参数的关系。结果显示:纳木错湖水中存在较高丰度的cbbL ID类型固碳微生物,从表层到底层呈增加趋势,T2点底层达到最高值(6.37×10~8拷贝L~(-1)湖水)。cbbL ID类型固碳微生物共分四个类群,即不等鞭毛类(Stramenopiles),定鞭藻纲(Haptophyceae),蓝藻(Cyanobacteria)和隐藻门(Cryptophyta)。其中占主要的是Stramenopiles和Haptophyceae。Stramenopiles类群的多样性较高(含7个纲,13个科),其他类群只有1个科。相关性分析表明Stramenopiles和Haptophyceae出现频率存在显著的负相关关系(P0.01)。湖水深度和pH与湖水cbbL ID基因丰度显著相关(P0.05,P0.01)。叶绿素含量与Stramenopiles和Haptophyceae出现频率显著相关(P0.01)。     

Surface aeration in a small,agitated, and sparged vessel

In a recent publication, a technique was outlined for measuring surface aeration rates in an agitated vessels while sparging, and it was shown that surface aeration rates fall rapidly with increasing sparge rates. That work was conducted in a 0.61 m diam vessels. The work reported here was done in a small vessel (0.22 m diam) where surface aeration has been reported to be of particular significance. In general, the results obtained in the small vessel confirmed those in the large one and in addition were generally in good agreement with those recently published elsewhere for an almost identical geometry. For typical practical power inputs and sparge rates, the rate of surface aeration was never more than 20% of the sparge rate and generally less than 5%. These results indicate that surface aeration is of considerably less importance than has generally been believed following the findings of workers who estimated its effect by comparing KL a values under unsparged conditions with those when sparging.     

The structure of the ventricle of Elliptio complanatus, a fresh-water lamellibranch

The morphology of the ventricle of the fresh-water lamellibranch, Elliptio complanatus, was investigated. Contrary to the condition reported previously in Tritogonia verrucosa, the two atria in Elliptio communicate with the ventricular lumen through separate openings, each guarded by an atrio-ventricular valve. Fixation of ventricle for electron microscopy with 2.5% buffered glutaraldehyde did not appear to shrink the tissue, in spite of the low blood osmolarity to which the muscle is adapted. Ventricle tissue is composed of smooth muscle fibers, containing a central nucleus, glycogen, mitochondria, paramyosin, dense bodies and “attachment plaques,” much like the ventricle of the salt-water clam, Venus (Mercenaria) mercenaria.     

Microstructure,ontogeny, and evolution of scale surfaces in xenosaurid lizards

Both scanning electron and light microscopy were used to examine the epidermal structure of scales taken from several ontogenetic stages of Xenosaurus grandis and Shinisaurus crocodilurus. In addition, scales from all xenosaurid species were examined by scanning electron microscopy to determine scale surface variation among genera, species, and subspecies. A varied and phylogenetically informative morphology characterizes the scale surfaces of xenosaurid lizards. Scale surface morphology is conservative among the species and subspecies of Xenosaurus, but is more variable between the two xenosaurid genera. Their scale surfaces are characterized by folds in the oberhautchen, beta, mesos, and alpha epidermal layers, forming polygonal ridges of a type previously described for the Iguania. The three species of Xenosaurus possess lenticular scale organs, whereas Shinisaurus has scale organs with spikes (bristles). The spikes of Shinisaurus are formed by the beta and oberhautchen layers, with the alpha layer forming a dome-shaped cap over a dermal papilla. Shinisaurus crocodilurus exhibits a dramatic ontogenetic change in scale surface morphology, that is here reported for the first time in any lizard. © 1993 Wiley-Liss, Inc.     

Biology of the rainbowfish,Glossolepis multisquamatus (Melanotaeniidae), from the Sepik River floodplains,Papua New Guinea

Synopsis G. multisquamatus is abundant in the Sepik River, preferring floodplain lakes and marginal areas of floodplain with moderate turbidity. It is the only rainbowfish documented to inhabit river floodplains. Migrations onto and off the floodplain occur in response to changes in flood conditions. Seasonality is evident in reproduction, condition factor and fat deposit and stomach fullness indices; all increasing in the flood season. Fecundity is high compared with stream dwelling rainbowfish species mainly due to decreased egg size. The reproductive strategy ofG. multisquamatus is interpreted as a response to increased adult mortalities encountered on floodplains in comparison to more stable stream habitats occupied by related species.G. multisquamatus is carnivorous, its diet being similar to other rainbowfishes, consisting of a variety of small invertebrates taken from mid-water or the water surface. The ecology and behaviour ofG. multisquamatus is explained as a partial colonisation of newly developed floodplains in this river.     

Structural analysis and demonstration of the 29 kDa antigen of pathogenic Entamoeba histolytica as the major accessible free thiol-containing surface protein

The 29 kDa protein of pathogenic Entamoeba histolytica is a cysteine-rich surface antigen which we recently characterized by cDNA sequencing and by using monoclonal antibodies which differentiated between pathogenic and non-pathogenic clinical isolates. To determine the structure and biochemical attributes of this protein, a repertoire of immunologcal techniques using monoclonal antibodies, and radiolabelling were employed. We demonstrated that the 29 kDa protein forms a 60 kDa dimer and a high-molecular-mass oligomer(s) on the surface of the organism through disulphide bonds, and is the major accessible free thiol-containing surface protein of E. histolytica. The deduced amino acid sequence encoding the 29 kDa protein was found to share a common amino acid domain with sequences reported for Helicobacter pylori, Salmonella typhimurium, MER5 gene expressed in murine erythroleukemia cells, Clostridium pasteurianum, and a Bacillus spp.     

Effects of inter-annual temperature variability,including ENSO and post-ENSO events,on reproductive traits in the tunicate Pyura praeputialis

Reproduction in tunicates is considered to be particularly vulnerable to changes in seawater temperature. In the present study we investigated the effects of sea surface temperature and temperature anomalies on reproductive traits of the non-native sessile tunicate Pyura praeputialis. Reproductive traits of this species were investigated over the course of 67 months, based on samples collected at two localities (eastern and western shorelines) of the Bay of Antofagasta. The study period included years with different oceanic and atmospheric conditions: a warm event, El Niño (June 1997 to July 1998); a cold event, La Niña (August 1998 to December 2000); and post-La Niña (January 2000 to December 2002). We compared two common indices (condition and gonadosomatic) and histological sections to evaluate the maximum reproduction index of this introduced species that dominates a large part of the rocky intertidal habitat in the Bay of Antofagasta. We found sexually mature individuals all year-round and a decrease in both reproductive indices matching the reduction in the sea surface temperature during the austral autumn and winter months. The results suggest that gonad development in this species is sensitive to sea surface temperature and thermal anomalies. We conclude that future thermal anomalies or projected global average sea surface warming associated with climate change might have no negative consequences on these reproductive traits of P. praeputialis. This suggests this species is ecologically resilient and that the ecosystem services that this species provides for other invertebrate and algal species will be maintained.     

Condition status of the endangered desert pupfish,Cyprinodon macularius Baird and Girard, 1853, in the Lower Colorado River Basin (Mexico)

The length‐weight relationship (LWR) was used to test differences in the fish somatic condition factor among four populations of the endangered desert pupfish, Cyprinodon macularius, from the Lower Colorado River Basin, Mexico. Bimonthly fish sampling and habitat assessments were carried out from September 1996 to August 1997 for four sites in Baja California and Sonora. Slope b of the WLR varied from 3.238 (Cerro Prieto population) to 3.613 (Welton‐Mohawk population), showing in all populations a positive allometric growth. Male b values were higher than those of females for Cerro Prieto (3.303 vs 3.071), Welton‐Mohawk (3.866 vs 3.579), and Flor del Desierto (3.357 vs 3.169) populations. The Cerro Prieto population showed the highest somatic condition (y‐intercept, a = ?11.759). Water depth and salinity were the ecological variables that better accounted for most of the variation in the somatic condition of this pupfish, with a negative and a positive effect, respectively.     

The giant and complex genital plug of the asper group of Bothriurus (Scorpiones, Bothriuridae): morphology and comparison with other genital plugs in scorpions

The genital plugs of two species of the asper group of Bothriurus (Scorpiones: Bothriuridae) are described and compared with other genital plugs reported in the family Bothriuridae. In both species, B. asper and Bothriurus sp., the genital plug is cone-shaped and formed by fusion of the basal lobes of the hemispermatophore. Fusion is complete in B. asper and the surface of the plug has many microspines that anchor it to the female genital atrium. In Bothriurus sp., the basal lobes are partially fused, but free on the dorsal side, and the plug has a smooth surface with a dorsal curvature. Both genital plugs completely fill the genital atrium of inseminated females, pressing against the cuticular wall of the atrium. Given the large size and complex shape, the genital plug of the B. asper group is unique, not only among Bothriuridae, but in the order Scorpiones. This new type of genital plug resembles the genital plugs of the scorpion families Urodacidae and Vaejovidae. A comparison of the four major types of genital plugs reported in Bothriurus species and some other bothriurids is provided, as well as a comparison with other genital plugs reported in more distantly related families of scorpions.     

A severe autosomal recessive acromesomelic dysplasia,the Hunter-Thompson type,and comparison with the Grebe type

Summary Two siblings with a short-limb dwarfing condition which we call acromesomelic dysplasia, Hunter-Thompson type are reported. Abnormalities are limited to the limbs and limb joints in this severe form of dwarfism. The middle and distal segments of the limbs are most affected. The lower limbs are more affected than the upper. We are aware of one previously published case of this entity reported by A. G. W. Hunter and M. W. Thompson in 1976. Dislocations of the elbows and ankles were present in all three patients and dislocations of the hips and knees in two. One of the siblings who did not have hip and knee dislocations clinically resembled Grebe chondrodysplasia, another severe acromesomelic dwarfing condition. However, radiological analysis suggests that while acromesomelic dysplasia, Hunter-Thompson type and Grebe chondrodysplasia are related, they are not identical. Grebe chondrodysplasia has been established as an autosomal recessive trait. It appears probable that the entity we describe has the same mode of genetic transmission.     

The mechanism of pattern formation in the developing drosophila retina

The biological patterning of the drosophila retina in vivo has striking resemblance to liquid bubbles, in which the surface mechanics due to N-cadherin within a sub-group of retina cells can be mimicked by surface tension. In this work, the aggregating patterns were reasonably simplified into 2D clusters consisting of 2—6 identical bubbles confined within a shrinking boundary. By using a hybrid fluid dy-namics model proposed for liquid foams, the aggregating process of 2―6 retina cells was studied. Assuming the minimal perimeter for patterning cells to be the condition of stability patterns, the stable converged patterns we simulated in this work are the same as the experimental observations. More importantly, a new pattern of 6 cells was obtained which was found physically more stable than the other two reported by Hayashi and Carthew[1]. Aggregating perimeters of cells, i.e. the surface energy, showed a good linear fit with the cell numbers.     

Relationship between body condition of American alligators and water depth in the Everglades, Florida

Feeding opportunities of American alligators (Alligator mississippiensis) in freshwater wetlands in south Florida are closely linked to hydrologic conditions. In the Everglades, seasonally and annually fluctuating surface water levels affect populations of aquatic organisms that alligators consume. Since prey becomes more concentrated when water depth decreases, we hypothesized an inverse relationship between body condition and water depth in the Everglades. On average, condition of adult alligators in the dry season was significantly higher than in the wet season, but this was not the case for juveniles/subadults. The correlation between body condition and measured water depth at capture locations was weak; however, there was a significant negative correlation between the condition and predicted water depth prior to capture for all animals except for spring juveniles/subadults which had a weak positive condition–water depth relationship. Overall, a relatively strong inverse correlation occurred at 10–49 days prior to the capture day, suggesting that current body condition of alligators may depend on feeding opportunities during that period. Fitted regression of body condition on water depth (mean depth of 10 days when condition-water depth correlation was greatest) resulted in a significantly negative slope, except for spring adult females and spring juveniles/subadults for which slopes were not significantly different from zero. Our results imply that water management practices may be critical for alligators in the Everglades since water depth can affect animal condition in a relatively short period of time.     

Genetic population structure of sugarcane aphid,Melanaphis sacchari,in sorghum,sugarcane, and Johnsongrass in the continental USA

In 2013, an outbreak of Melanaphis sacchari Zehntner (Hemiptera: Aphididae) was reported in sorghum in Texas, USA. Although this aphid has been reported in the continental USA for nearly a century, its occurrence was limited to Florida and Louisiana sugarcane. After 2013 and within just 3 years M. sacchari was reported in almost all sorghum growing regions from south central to southeastern states in the USA. Sorghum fields in affected areas have sustained considerable losses. This aphid has also been reported on Johnsongrass and other feral grasses. The speed at which this aphid has spread raises serious concerns about future infestations. Many aphid species present genetically distinct populations when feeding on different host plants. Thus, it was hypothesized that the recent outbreak in sorghum could be explained by a recent introduction of a sorghum‐specialized genotype. In this study, we genetically characterized M. sacchari in three of its most common host plants – sorghum, sugarcane, and Johnsongrass – across its geographic distribution in the continental USA. Although M. sacchari specimens were grouped within three genetically distinct clusters, we did not find evidence of host plant or geographic population structure. Our characterization of the genetic structure of this pest provides baseline data aimed to help explain its recent outbreak in sorghum, as well as information that may aid in the design of sustainable control strategies.