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1.
In the present study, we report, for the first time, the allele and haplotype frequencies of 17 Y-STR (Y-filer) loci in the populations of Haiti, Jamaica and the Bahamas (Abaco, Eleuthera, Exuma, Grand Bahama, Long Island and New Providence). This investigation was undertaken to assess the paternal genetic structure of the abovementioned Caribbean islands. A total of 607 different haplotypes were identified among the 691 males examined, of which 537 (88.5%) were unique. Haplotype diversities (HD) ranged from 0.989 in Long Island to 1.000 in Grand Bahama, with limited haplotype sharing observed among these Caribbean collections. Discriminatory capacity (DC) values were also high, ranging from 79.1% to 100% in Long Island and Grand Bahama, respectively, illustrating the capacity of this set of markers to differentiate between patrilineal related individuals within each population. Phylogenetic comparison of the Bahamian, Haitian and Jamaican groups with available African, European, East Asian and Native American populations reveals strong genetic ties with the continental African collections, a finding that corroborates our earlier work using autosomal STR and Y-chromosome binary markers. In addition, various degrees of sex-biased gene flow exhibiting disproportionately higher European paternal (as compared to autosomal) influences were detected in all Caribbean islands genotyped except for Abaco and Eleuthera. We attribute the presence or absence of asymmetric gene flow to unique, island specific demographic events and family structures.  相似文献   

2.
We describe a new species of rail from the Sawmill Sink blue hole on Abaco Island in the northern Bahamas. Known from abundant, beautifully preserved Late Pleistocene fossils, Rallus cyanocavi sp. nov. was a medium-sized, flightless species that probably was endemic to the Little Bahama Bank, which is a carbonate platform surrounded by deeper water. We are uncertain whether R. cyanocavi survived into the Holocene, when higher sea levels transformed the Little Bahama Bank from a single large, Late Pleistocene island (ca. 12000 km2) to the scattering of smaller islands seen today, the largest of which is Abaco (1681 km2). Fossils of additional extinct, flightless species of Rallus probably await discovery on some of the 21 other carbonate banks that span the Bahamian Archipelago.  相似文献   

3.
According to written sources, Roma (Romanies, Gypsies) arrived in the Balkans around 1,000 years ago from India and have subsequently spread through several parts of Europe. Genetic data, particularly from the Y chromosome, have supported this model, and can potentially refine it. We now provide an analysis of Y-chromosomal markers from five Roma and two non-Roma populations (N = 787) in order to investigate the genetic relatedness of the Roma population groups to one another, and to gain further understanding of their likely Indian origins, the genetic contribution of non-Roma males to the Roma populations, and the early history of their splits and migrations in Europe. The two main sources of the Roma paternal gene pool were identified as South Asian and European. The reduced diversity and expansion of H1a-M82 lineages in all Roma groups imply shared descent from a single paternal ancestor in the Indian subcontinent. The Roma paternal gene pool also contains a specific subset of E1b1b1a-M78 and J2a2-M67 lineages, implying admixture during early settlement in the Balkans and the subsequent influx into the Carpathian Basin. Additional admixture, evident in the low and moderate frequencies of typical European haplogroups I1-M253, I2a-P37.2, I2b-M223, R1b1-P25, and R1a1-M198, has occurred in a more population-specific manner.  相似文献   

4.
Although previous studies have characterized the genetic structure of populations from Haiti and Jamaica using classical and autosomal STR polymorphisms, the patrilineal influences that are present in these countries have yet to be explored. To address this lacuna, the current study aims to investigate, for the first time, the potential impact of different ancestral sources, unique colonial histories, and distinct family structures on the paternal profile of both groups. According to previous reports examining populations from the Americas, island-specific demographic histories can greatly impact population structure, including various patterns of sex-biased gene flow. Also, given the contrasting autosomal profiles provided in our earlier study (Simms et al.: Am J Phys Anthropol 142 (2010) 49-66), we hypothesize that the degree and directionality of gene flow from Europeans, Africans, Amerindians, and East Asians are dissimilar in the two countries. To test this premise, 177 high-resolution Y-chromosome binary markers and 17 Y-STR loci were typed in Haiti (n = 123) and Jamaica (n = 159) and subsequently utilized for phylogenetic comparisons to available reference collections encompassing Africa, Europe, Asia (East and South), and the New World. Our results reveal that both studied populations exhibit a predominantly South-Saharan paternal component, with haplogroups A1b-V152, A3-M32, B2-M182, E1a-M33, E1b1a-M2, E2b-M98, and R1b2-V88 comprising 77.2% and 66.7% of the Haitian and Jamaican paternal gene pools, respectively. Yet, European derived chromosomes (i.e., haplogroups G2a*-P15, I-M258, R1b1b-M269, and T-M184) were detected at commensurate levels in Haiti (20.3%) and Jamaica (18.9%), whereas Y-haplogroups indicative of Chinese [O-M175 (3.8%)] and Indian [H-M69 (0.6%) and L-M20 (0.6%)] ancestry were restricted to Jamaica.  相似文献   

5.
Whether present-day European genetic variation and its distribution patterns can be attributed primarily to the initial peopling of Europe by anatomically modern humans during the Paleolithic, or to latter Near Eastern Neolithic input is still the subject of debate. Southeastern Europe has been a crossroads for several cultures since Paleolithic times and the Balkans, specifically, would have been part of the route used by Neolithic farmers to enter Europe. Given its geographic location in the heart of the Balkan Peninsula at the intersection of Central and Southeastern Europe, Serbia represents a key geographical location that may provide insight to elucidate the interactions between indigenous Paleolithic people and agricultural colonists from the Fertile Crescent. In this study, we examine, for the first time, the Y-chromosome constitution of the general Serbian population. A total of 103 individuals were sampled and their DNA analyzed for 104 Y-chromosome bi-allelic markers and 17 associated STR loci. Our results indicate that approximately 58% of Serbian Y-chromosomes (I1-M253, I2a-P37.2 and R1a1a-M198) belong to lineages believed to be pre-Neolithic. On the other hand, the signature of putative Near Eastern Neolithic lineages, including E1b1b1a1-M78, G2a-P15, J1-M267, J2-M172 and R1b1a2-M269 accounts for 39% of the Y-chromosome. Haplogroup frequency distributions in Western and Eastern Europe reveal a spotted landscape of paleolithic Y chromosomes, undermining continental-wide generalizations. Furthermore, an examination of the distribution of Y-chromosome filiations in Europe indicates extreme levels of Paleolithic lineages in a region encompassing Serbia, Bosnia-Herzegovina and Croatia, possibly the result of Neolithic migrations encroaching on Paleolithic populations against the Adriatic Sea.  相似文献   

6.
Reports from native informants backed with voucher plant specimens were obtained in a 1969–1970 field study on the Bahama islands of Great Exuma, Little Exuma and Long Island. Over 130 plant species of some 60 families are used within this culture for a wide variety of medicinal purposes. Pertinent background material and personal observations during field work indicated that knowledge of “bush medicine” is fading. The information recorded includes common names of each medicinal plant, uses, and preparations. A systematic list cross-referenced with common names is provided.  相似文献   

7.
Bird populations, especially on islands, have declined or gone extinct due to overhunting, habitat loss and fragmentation, and adverse effects of the introduction of non-native species. Bahama Swallows (Tachycineta cyaneoviridis), endangered secondary cavity nesters that breed on only three islands in the northern Bahamas, are an island species with a declining population, but the causes of this decline are unknown. During four breeding seasons on Great Abaco Island (2014–2017), we identified cavity-nesting resources used by breeding swallows in native pine forest and other habitats, and estimated phenology and breeding parameters from a subset of nests. Bahama Swallows nest in cavities in a variety of structures, but rely most on woodpecker-excavated cavities in pine snags and utility poles. Swallows nesting in cavities in pine snags had higher fledging success (92%) than those nesting in cavities in utility poles (50–62%), which were concentrated in non-pine habitat that may expose swallows to predation and increased competition for nest cavities from other species. The high reproductive success of Bahama Swallows nesting in the pine forest indicates that the decline in population cannot be attributed to poor productivity on southern Great Abaco. However, our results suggest that the dependence of Bahama Swallows on cavities excavated by Hairy Woodpeckers (Dryobates villosus) for nesting sites may be a factor in their decline, and highlight the potential importance of the protection and management of pine forests in future efforts to ensure the survival of Bahama Swallows.  相似文献   

8.
The non-recombining nature of the Y chromosome and the well-established phylogeny of Y-specific Single Nucleotide Polymorphisms (Y-SNPs) make them useful for defining haplogroups with high geographical specificity; therefore, they are more apt than the Y-STRs to detect population stratification in admixed populations from diverse continental origins. Different Y-SNP typing strategies have been described to address issues of population history and movements within geographic territories of interest. In this study, we investigated a set of 41 Y-SNPs in 1217 unrelated males from the five Brazilian geopolitical regions, aiming to disclose the genetic structure of male lineages in the country. A population comparison based on pairwise FST genetic distances did not reveal statistically significant differences in haplogroup frequency distributions among populations from the different regions. The genetic differences observed among regions were, however, consistent with the colonization history of the country. The sample from the Northern region presented the highest Native American ancestry (8.4%), whereas the more pronounced African contribution could be observed in the Northeastern population (15.1%). The Central-Western and Southern samples showed the higher European contributions (95.7% and 93.6%, respectively). The Southeastern region presented significant European (86.1%) and African (12.0%) contributions. The subtyping of the most frequent European lineage in Brazil (R1b1a-M269) allowed differences in the genetic European background of the five Brazilian regions to be investigated for the first time.  相似文献   

9.
The primary mechanism of gene flow in marine sessile invertebrates is larval dispersal. In Pseudopterogorgia elisabethae, a commercially important Caribbean gorgonian coral, a proportion of the larvae drop to the substratum within close proximity to the maternal colony, and most matings occur between individuals in close proximity to each other. Such limited dispersal of reproductive propagules suggests that gene flow is limited in this gorgonian. In this study, we characterized the population genetic structure of P. elisabethae across the Bahamas using six microsatellite loci. P. elisabethae was collected from 18 sites across the Bahamas. Significant deviations from Hardy-Weinberg equilibrium due to deficits of heterozygotes within populations were detected for all 18 populations in at least one of the six screened loci. Levels of genetic structure among populations of P. elisabethae were high and significant. A distance analysis placed populations within three groups, one formed by populations located within Exuma Sound, a semi-isolated basin, another consisting of populations located outside the basin and a third group comprising two populations from San Salvador Island. The patterns of genetic variation found in this study are concordant with the life-history traits of the species and in part with the geography of the Bahamas. Conservation and management plans developed for P. elisabethae should considered the high degree of genetic structure observed among populations of the species, as well as the high genetic diversity found in the San Salvador and the Exuma Sound populations.  相似文献   

10.
Two species of reptile ticks, Amblyomma dissimile Koch and Amblyomma torrei Pérez Vigueras (Acari: Ixodidae), are reported from the Bahama Islands for the first time. The widespread neotropical (including the Caribbean and southern Florida) A. dissimile was recovered on Andros Island from three species of reptiles all for the first time: the Andros iguana Cyclura cychlura cychlura Cuvier, the Andros curly tail lizard Leiocephalus carinatus coryi Schmidt, and the Andros boa Epicrates striatus fowleri Sheplan and Schwartz. The iguana tick A. torrei, previously known only from Cuba, Puerto Rico and the Cayman Islands, was recovered in the Exuma Islands from the Exuma iguana Cyclura cychlura figginsi Barbour. Mean numbers of ticks per host were as high as 36.6 on Mangrove Cay, Andros Island, and 25.8 on Pasture Cay in the Exuma Islands.  相似文献   

11.
In admixed populations, genetic contributions from males and females of specific parental populations can be of different proportions due to past directional mating during the process of genetic admixture. In this research paper, we provide evidence of such male- and female-specific differential admixture components of African, European, and American Indian origin in an admixed population from the city of Melo, in the northeastern region of Uruguay. From data on 11 autosomal markers from a sample of 41 individuals of mixed African descent, we estimated 47% African, 38% European, and 15% Amerindian contributions. In contrast, 6 mtDNA site-specific polymorphic markers showed that the mtDNA genome of these individuals was 52% African, 19% European, and 29% Amerindian, while from 3 Y-specific polymorphic sites, we estimated 30% African, 64% European, and 6% Amerindian contributions. We argue that this heterogeneity of admixture estimates results from disproportionate unions of European males with African and American Indian females from which this mixed African population was formed. Also, we argue that the asymmetry of the admixture estimates from the three sets of markers (autosomal, mtDNA, and Y-linked) is a result of the changes in the direction of mating during the history of the population. Implications of such evidence of directional mating are discussed, indicating the need of further demographic data for a quantitative assessment of the impact of directional mating on genetic structure of admixed populations.  相似文献   

12.
Spiller DA  Schoener TW 《Oecologia》2008,154(4):763-771
We investigated how temporal variation in rainfall influences the impact of lizards on spiders inhabiting small islands in Abaco, Bahamas. Annual censuses of web spiders were conducted on nine lizard islands and on eight no-lizard islands 1994–2003. Repeated-measures ANOVA showed that annual variation in spider density (time) and in the lizard effect on spider density (lizard × time) were both significant. Correlation coefficients between the lizard effect (ln ratio of no-lizard to lizard spider densities) and number of rainfall days were generally negative, and strengthened with length of the time period during which rainfall was measured prior to annual spider censuses. Spider density was also negatively correlated with rainfall days and strengthened with length of the prior time period. Longer time intervals included the hurricane season, suggesting that the strong negative correlations were linked to high rainfall years during which tropical storms impacted the region and reduced spider and lizard densities. Split-plot ANOVA showed that rainfall during the hurricane season had a significant effect on the lizard effect and on spider density. Results in this study are opposite to those found in our previous 10-year study (1981–1990) conducted in the Exuma Cays, a moderately xeric region of the Bahamas, where the relation between rainfall and the lizard effect on spider density was positive. Combined data from the Exuma and Abaco studies produce a unimodal relation between trophic interaction strength and rainfall; we suggest that the negative effect of storms associated with rainfall was paramount in the present study, whereas the positive bottom-up effect of rainfall prevailed in our previous study. We conclude that climatic variability has a major impact on the trophic interaction and suggest that a substantial change in precipitation in either direction may weaken the interaction significantly.  相似文献   

13.
Abstract.— We use chloroplast DNA (cpDNA) variation and nested clade phylogeographic analyses to infer the historical processes that have contributed to the high level of morphological and ecological diversification present in a group of herbaceous perennials (the Piriqueta caroliniana complex) in North America and the Bahamas. The presence of morphologically distinct and intercompatible varieties (morphotypes) that can be distinguished based on suites of taxonomic characters (e.g., leaf shape, pubescence type, stature) and contrasting habitat affinities (from marshes to dry pinelands and sand scrub) makes this group particularly appropriate for studies of intraspecific diversification. To examine the distribution of haplotypes among populations, we sampled 467 individuals from 55 locations in Florida, Georgia, and the northern Bahamas (Grand Bahama and Abaco) and screened each individual for cpDNA variation using restriction fragment length polymorphism (RFLP) and heteroduplex analyses. We develop a one-step haplotype phylogeny for this group and use the geographic distributions of haplotypes and clades to test specific phylogeographic hypotheses using the methods developed by Templeton and his colleagues (Templeton 1998). In general, the distribution of haplotypes was strongly influenced by limited dispersal distances, with the more recently derived haplotypes having much lower levels of dispersion and lower frequencies in populations than the ancestral haplotypes. The patterns of clade and haplotype dispersion and displacement and the distribution of morphotypes imply at least three cases of long-distance dispersal and one case of historical fragmentation. The historical patterns inferred for populations of Piriqueta are consistent with known biogeographical events, historical vegetation change, and the concordant patterns of multiple Pleistocene refugia that have been observed for a number of other taxa in southeastern North America.  相似文献   

14.
We developed 12 polymorphic microsatellite loci for the buffy flower bat (Erophylla sezekorni) and 10 loci for Waterhouse's big-eared bat (Macrotus waterhousii). In E. sezekorni, we tested 65 individuals from three islands, Cuba, Exuma, and Abaco. Mean number of alleles per locus was 10.7 (range 5-20). In M. waterhousii, we tested 39 individuals from one island, Exuma. Mean number of alleles per locus was 6.9 (range 4-13). We will use these markers to study the phylogeography and mating system of these species.  相似文献   

15.
Aims Nestedness is a characteristic of insular metacommunity structure. Relatively few studies, however, have attempted to evaluate temporal changes in nestedness, or elucidate the mechanisms underlying nestedness. I evaluated both spatial and temporal patterns of nestedness in the insular floras of four archipelagoes of small islands in the Bahamas and the potential underlying environmental gradients.Methods The NODF (a nestedness metric based on overlap and decreasing fill) and the matrix temperature measure, T, were used to quantify nestedness in insular floras on small islands near Abaco, Andros, Great Exuma and the Exuma Cays, Bahamas. Two different null models were employed for each nestedness measure. Six environmental variables were evaluated in relation to nestedness by ordering islands according to gradients and recalculating NODF scores.Important findings All archipelagoes were significantly nested. Nestedness among sites contributed more to overall nestedness than did nestedness among species. NODF scores varied among archipelagoes, but were surprisingly constant over time. Ordering islands by vegetated area yielded the highest nestedness scores for three archipelagoes; ordering islands by protection from exposure yielded the highest nestedness score for one archipelago. Nestedness scores varied little over time even though species compositions changed, indicating that extinctions occurred in a deterministic manner. The relative importance of area suggests extinction is an important mechanism in producing nestedness. Attempting to determine the relative importance of immigrations or extinctions requires some assumptions, however, and both processes are likely cumulative in most cases.  相似文献   

16.
Surveys for veliger larvae of the large gastropods Strombusgigas and Strombus costatus were carried out in duplicate transectsrunning offshore (0.26–5 km) from Lee Stocking Island,Exuma Cays, Bahamas. The across-shelf distribution of the larvaeduring the 1991 spawning season was highly variable over periodsof 3–6 days. Larvae of both species are known to inhabitthe upper few meters of the water column, and analysis of windstress patterns over the study period showed that across-shelfdistribution of the larvae was affected by wind forcing. Seaward(recruitment-unfavorable) transport near Lee Stocking Islandwas most highly correlated with wind stress toward the north-northwest(335–357). The resultant wind stress during the studywas toward 279, suggesting that recruitment of conch to nurserygrounds on the Great Bahama Bank in the Exuma Cays occurs underanomalous summer wind conditions. The correlation between theacross-shelf distribution of conch veligers and wind stresswas highest with extinction coefficients of 0.17–0.23in the exponentially filtered wind stress. This indicates thatlarval distribution over the 5-km-long transects responded rapidlyto changes in wind stress. Over 75% of the effective wind stressoccurred over just 6–8 h preceding collections; therefore,short-term changes in wind stress, such as afternoon strengtheningof the trade winds, may have a significant influence on across-shelflarval transport. 3Present address: Northeast Fisheries Science Center, NationalMarine Fisheries Service NOAA, 74 Magruder Road, Highlands,NJ 07732, USA  相似文献   

17.
Geographic barriers that limit the movement of individuals between populations may create or maintain phylogenetically discrete lineages. Such barriers are often inferred from geographic surveys of a single mitochondrial marker to identify phylogenetic splits. Mitochondrial DNA, however, has an effective population size one-fourth that of nuclear DNA, which can facilitate the rapid evolution of monophyletic mtDNA lineages in the absence of geographic barriers. The identification of geographic barriers will thus be more robust if barriers are proposed a priori, and tested with multiple independent genetic markers in multiple species. Here, we tested two proposed marine biogeographic breaks located at the Mona Passage in the Caribbean Sea and at the southern end of Exuma Sound in the Bahamas. We sequenced mitochondrial cytochrome b (400 bp) and nuclear rag1 (573 bp) for nine species and colour forms (183 individuals total) within the teleost genus Elacatinus (Gobiidae) that span the proposed breaks. Our results showed that Mona Passage separated mtcyb and rag1 lineages, with no genetic exchange between populations separated by just 23 km. However, the Central Bahamas barrier was only weakly supported by our data. Importantly, neither barrier coincided with deep genetic splits. This suggests that these two barriers did not initially isolate regional populations, but instead disrupt ongoing gene flow between regions. Our inferred relationships further suggested a division of the Caribbean region into northwestern and southeastern regions, a pattern reflected by some freshwater and terrestrial vertebrates. Our results, coupled with genetic and demographic data from other reef fishes and corals, provide robust support for the Mona Passage as a long-term biogeographic barrier for Caribbean animals.  相似文献   

18.
Recent genetic studies of the Tuareg have begun to uncover the origin of this semi-nomadic northwest African people and their relationship with African populations. For centuries they were caravan traders plying the trade routes between the Mediterranean coast and south-Saharan Africa. Their origin most likely coincides with the fall of the Garamantes who inhabited the Fezzan (Libya) between the 1st millennium BC and the 5th century AD. In this study we report novel data on the Y-chromosome variation in the Libyan Tuareg from Al Awaynat and Tahala, two villages in Fezzan, whose maternal genetic pool was previously characterized. High-resolution investigation of 37 Y-chromosome STR loci and analysis of 35 bi-allelic markers in 47 individuals revealed a predominant northwest African component (E-M81, haplogroup E1b1b1b) which likely originated in the second half of the Holocene in the same ancestral population that contributed to the maternal pool of the Libyan Tuareg. A significant paternal contribution from south-Saharan Africa (E-U175, haplogroup E1b1a8) was also detected, which may likely be due to recent secondary introduction, possibly through slavery practices or fusion between different tribal groups. The difference in haplogroup composition between the villages of Al Awaynat and Tahala suggests that founder effects and drift played a significant role in shaping the genetic pool of the Libyan Tuareg.  相似文献   

19.
Discovered in the early 16th century by European colonists, Bermuda is an isolated set of islands located in the mid-Atlantic. Shortly after its discovery, Bermuda became the first English colony to forcibly import its labor by trafficking in enslaved Africans, white ethnic minorities, and indigenous Americans. Oral traditions circulating today among contemporary tribes from the northeastern United States recount these same events, while, in Bermuda, St. David's Islanders consider their histories to be linked to a complex Native American, European, and African past. To investigate the influence of historical events on biological ancestry and native cultural identity, we analyzed genetic variation in 111 members of Bermuda's self-proclaimed St. David's Island Native Community. Our results reveal that the majority of mitochondrial DNA (mtDNA) and Y-chromosome haplotypes are of African and West Eurasian origin. However, unlike other English-speaking New World colonies, most African mtDNA haplotypes appear to derive from central and southeast Africa, reflecting the extent of maritime activities in the region. In light of genealogical and oral historical data from the St. David's community, the low frequency of Native American mtDNA and NRY lineages may reflect the influence of genetic drift, the demographic impact of European colonization, and historical admixture with persons of non-native backgrounds, which began with the settlement of the islands. By comparing the genetic data with genealogical and historical information, we are able to reconstruct the complex history of this Bermudian community, which is unique among New World populations.  相似文献   

20.
Thermograph, current-meter, and coastal-weather data from Lee Stocking Island, Exuma Cays, Bahamas, are used to investigate hydrographic and meteorological conditions preceding and during a bleaching event in August 1990. Shelf water temperatures recorded at three locations rise to just over 30 °C. Weather data provide estimates of local heating and cooling by insolation, net outgoing long-wave radiation, and sensible and latent heat fluxes. Weather data do not indicate a period of unusually clear skies during the days and weeks preceding the bleaching event. Rather, calculations suggest that low wind speeds during late July and early August reduced evaporative cooling. A tidal channel near the bleaching site provided a source of hyperpycnal 31 °C water that had been heated in the shallow waters of Great Bahama Bank. Current-meter data suggest an along-shelf transport of water from the mouth of the tidal channel to the bleaching site. A comparison of wind-stress and water-temperature data suggests that a downwelling pattern contributed to heating at the reef by flooding the shelf with warm surface water. Results suggest that heating at the reef was a combination of local warming, enhanced by reduced evaporation, and advective warming resulting from both an along-shelf transport of bank water and a landward across-shelf transport of warm surface water.  相似文献   

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