Pollination by the locally endangered island flying fox (Pteropus hypomelanus) enhances fruit production of the economically important durian (Durio zibethinus)

Fruit bats provide valuable pollination services to humans through a unique coevolutionary relationship with chiropterophilous plants. However, chiropterophily in the Old World and the pollination roles of large bats, such as flying foxes (Pteropus spp., Acerodon spp., Desmalopex spp.), are still poorly understood and require further elucidation. Efforts to protect these bats have been hampered by a lack of basic quantitative information on their role as ecosystem service providers. Here, we investigate the role of the locally endangered island flying fox Pteropus hypomelanus in the pollination ecology of durian (Durio zibethinus), an economically important crop in Southeast Asia. On Tioman Island, Peninsular Malaysia, we deployed 19 stations of paired infrared camera and video traps across varying heights at four individual flowering trees in a durian orchard. We detected at least nine species of animal visitors, but only bats had mutualistic interactions with durian flowers. There was a clear vertical stratification in the feeding niches of flying foxes and nectar bats, with flying foxes feeding at greater heights in the trees. Flying foxes had a positive effect on mature fruit set and therefore serve as important pollinators for durian trees. As such, semi‐wild durian trees—particularly tall ones—may be dependent on flying foxes for enhancing reproductive success. Our study is the first to quantify the role of flying foxes in durian pollination, demonstrating that these giant fruit bats may have far more important ecological, evolutionary, and economic roles than previously thought. This has important implications and can aid efforts to promote flying fox conservation, especially in Southeast Asian countries.     

Indirect Evidence that Flying Foxes Track Food Resources Among Islands in a Pacific Archipelago

Although flying foxes (fruit bats in the genus Pteropus ) in continental forests often fly between scattered resources, little is known about their ranging behavior among islands. The inhospitable water matrix that surrounds the food patches (islands) in archipelagos may prevent flying foxes from tracking resources as efficiently as their counterparts on larger landmasses do. Our aim in this study was to determine whether the abundance of foraging flying foxes ( Pteropus tonganus ) reflected food availability on islands in the Vava'u archipelago of Tonga, regardless of island size and isolation. Overall, food availability was the strongest determinant of flying fox abundance, and spatial aspects of the islands (land area within 10 km) had only a small influence. Food availability appears to regulate flying fox abundance only when food resources are low, but when food sources are plentiful, flying fox abundance may be high or low. These results provide indirect evidence that flying foxes are able to track food resources efficiently in an archipelago, and the water matrix that surrounds the food patches (islands) is not a strong deterrent for foraging animals.     

Urban habituation, ecological connectivity and epidemic dampening: the emergence of Hendra virus from flying foxes (Pteropus spp.)

Anthropogenic environmental change is often implicated in the emergence of new zoonoses from wildlife; however, there is little mechanistic understanding of these causal links. Here, we examine the transmission dynamics of an emerging zoonotic paramyxovirus, Hendra virus (HeV), in its endemic host, Australian Pteropus bats (fruit bats or flying foxes). HeV is a biosecurity level 4 (BSL-4) pathogen, with a high case-fatality rate in humans and horses. With models parametrized from field and laboratory data, we explore a set of probable contributory mechanisms that explain the spatial and temporal pattern of HeV emergence; including urban habituation and decreased migration-two widely observed changes in flying fox ecology that result from anthropogenic transformation of bat habitat in Australia. Urban habituation increases the number of flying foxes in contact with human and domestic animal populations, and our models suggest that, in addition, decreased bat migratory behaviour could lead to a decline in population immunity, giving rise to more intense outbreaks after local viral reintroduction. Ten of the 14 known HeV outbreaks occurred near urbanized or sedentary flying fox populations, supporting these predictions. We also demonstrate that by incorporating waning maternal immunity into our models, the peak modelled prevalence coincides with the peak annual spill-over hazard for HeV. These results provide the first detailed mechanistic framework for understanding the sporadic temporal pattern of HeV emergence, and of the urban/peri-urban distribution of HeV outbreaks in horses and people.     

Disease Risk Perception and Safety Practices: A Survey of Australian Flying Fox Rehabilitators

Interactions with flying foxes pose disease transmission risks to volunteer rehabilitators (carers) who treat injured, ill, and orphaned bats. In particular, Australian bat lyssavirus (ABLV) can be transmitted directly from flying foxes to humans in Australia. Personal protective equipment (PPE) and rabies vaccination can be used to protect against lyssavirus infection. During May and June 2014, active Australian flying fox carers participated in an online survey (SOAR: Survey Of Australian flying fox Rehabilitators) designed to gather demographic data, assess perceptions of disease risk, and explore safety practices. Responses to open-ended questions were analysed thematically. A logistic regression was performed to assess whether rehabilitators’ gender, use of PPE, threat perception, and years of experience predicted variation in their odds of being bitten or scratched. Eligible responses were received from 122 rehabilitators located predominantly on the eastern coast of Australia. Eighty-four percent of respondents were female. Years of experience ranged from <1 to 30 years (median 5 years). Respondents were highly educated. All rehabilitators were vaccinated against rabies and 94% received a rabies titre check at least every two years. Sixty-three percent of carers did not perceive viruses in flying foxes as a potential threat to their health, yet 74% of carers reported using PPE when handling flying foxes. Eighty-three percent of rehabilitators had received a flying fox bite or scratch at some point during their career. Carers provide an important community service by rescuing and rehabilitating flying foxes. While rehabilitators in this study have many excellent safety practices, including a 100% vaccination rate against rabies, there is room for improvement in PPE use. We recommend 1) the establishment of an Australia-wide set of guidelines for safety when caring for bats and 2) that the responsible government agencies in Australia support carers who rescue potentially ABLV-infected bats by offering compensation for PPE.     

The diet of Pteropus voeltzkowi, an endangered fruit bat endemic to Pemba Island, Tanzania

The diet of the Pemba flying fox Pteropus voeltzkowi , a species endemic to the island of Pemba off Tanzania, was investigated. Faecal pellets, ejecta and dropped fruits were collected from under roosts to facilitate dietary analysis. This was supplemented by data from local villagers and school students. The main component of the diet was mango ( Mangifera indica ), but bats also ate breadfruit ( Artocarpus altilis ), figs ( Ficus spp.), flowers, leaves, and other fruit. Pollen from at least five plant species was also found in faecal pellets. Pteropus voeltzkowi may be one of the only species on the island that disperses larger seeds. The germination rate of bat‐ingested seeds was higher than that for seeds from ripe fruit, and this appeared to be linked to selective ingestion of viable seeds by bats.     

Hendra virus infection dynamics in Australian fruit bats

Hendra virus is a recently emerged zoonotic agent in Australia. Since first described in 1994, the virus has spilled from its wildlife reservoir (pteropid fruit bats, or 'flying foxes') on multiple occasions causing equine and human fatalities. We undertook a three-year longitudinal study to detect virus in the urine of free-living flying foxes (a putative route of excretion) to investigate Hendra virus infection dynamics. Pooled urine samples collected off plastic sheets placed beneath roosting flying foxes were screened for Hendra virus genome by quantitative RT-PCR, using a set of primers and probe derived from the matrix protein gene. A total of 1672 pooled urine samples from 67 sampling events was collected and tested between 1 July 2008 and 30 June 2011, with 25% of sampling events and 2.5% of urine samples yielding detections. The proportion of positive samples was statistically associated with year and location. The findings indicate that Hendra virus excretion occurs periodically rather than continuously, and in geographically disparate flying fox populations in the state of Queensland. The lack of any detection in the Northern Territory suggests prevalence may vary across the range of flying foxes in Australia. Finally, our findings suggest that flying foxes can excrete virus at any time of year, and that the apparent seasonal clustering of Hendra virus incidents in horses and associated humans (70% have occurred June to October) reflects factors other than the presence of virus. Identification of these factors will strengthen risk minimization strategies for horses and ultimately humans.     

狐蝠对森林生态系统的作用

翼手目 (Chiroptera)为真正能飞翔的哺乳动物 ,现存 19科 110 7种 ,分别属于小蝙蝠亚目 (Microchiroptera)和大蝙蝠亚目 (Megachiroptera) ;其中大蝙蝠又称旧大陆狐蝠或果蝠 (flyingfox) ,分布在热带和亚热带地区 ,仅狐蝠科 188种 ,我国自然分布有 9种。部分地区因栖息地丧失和过度捕杀导致狐蝠种群数量全球性或地区性下降或灭绝 ;狐蝠通过传播种子或传粉 ,促进森林生态系统的更新和基因交流。因此 ,狐蝠对森林生态系统的稳定、扩散、生物多样性以及衰退森林的恢复有重要作用     

Population genetics of fruit bat reservoir informs the dynamics,distribution and diversity of Nipah virus

The structure and connectivity of wildlife host populations may influence zoonotic disease dynamics, evolution and therefore spillover risk to people. Fruit bats in the genus Pteropus, or flying foxes, are the primary natural reservoir for henipaviruses—a group of emerging paramyxoviruses that threaten livestock and public health. In Bangladesh, Pteropus medius is the reservoir for Nipah virus—and viral spillover has led to human fatalities nearly every year since 2001. Here, we use mitochondrial DNA and nuclear microsatellite markers to measure the population structure, demographic history and phylogeography of P. medius in Bangladesh. We combine this with a phylogeographic analysis of all known Nipah virus sequences and strains currently available to better inform the dynamics, distribution and evolutionary history of Nipah virus. We show that P. medius is primarily panmictic, but combined analysis of microsatellite and morphological data shows evidence for differentiation of two populations in eastern Bangladesh, corresponding to a divergent strain of Nipah virus also found in bats from eastern Bangladesh. Our demographic analyses indicate that a large, expanding population of flying foxes has existed in Bangladesh since the Late Pleistocene, coinciding with human population expansion in South Asia, suggesting repeated historical spillover of Nipah virus likely occurred. We present the first evidence of mitochondrial introgression, or hybridization, between P. medius and flying fox species found in South‐East Asia (P. vampyrus and P. hypomelanus), which may help to explain the distribution of Nipah virus strains across the region.     

Disproportionately large ecological role of a recently mass-culled flying fox in native forests of an oceanic island

Human-wildlife conflicts pose a growing threat to many species worldwide and require increasingly innovative and multi-disciplinary resolutions. Because of their apparent simplicity and political appeal, lethal approaches like culling are often favoured, decisions to cull are typically poorly supported by scientific evidence and the limitations and drawbacks of culls minimised. As natural habitats decline and fruit crop production expands, fruit-eating bats in the Old World (family Pteropodidae) are increasingly in conflict with fruit farmers. This conflict is exemplified on Mauritius where the government has implemented two mass culls of a threatened flying fox (Pteropus niger) since 2015 in response to fruit-grower concerns. The culls and illegal hunting reduced the bat population by >50%. In this context, we sought to investigate the ecological role and service provided by the targeted flying fox through seed dissemination to gauge what may be lost as the species becomes rarer or extinct. We randomly sampled the woody native community in six of the best-preserved moist-to-wet native forests of Mauritius using 90 plots of 100 m² each and identified and measured the stem size of all woody plants ≥1 cm in diameter. Species were classified by whether their fruits occur in the diet of the flying fox in an exclusive, confirmed or likely manner and we assumed that fruit consumption is equivalent to potential seed dissemination. The relative importance of these three categories to the total woody plant community was then quantified as the proportion of species richness, stem density and basal area (as a surrogate of biomass) that they represent. We also investigated whether the main traits of species (seed size, fruit size, and maximum stem diameter) vary among bat-dispersal categories and differ from those of species whose fruits are not currently known to be eaten by the flying fox. On average, although about a quarter of the native woody species (24.6%) have fruits confirmed as eaten and seeds dispersed by the flying fox, these species comprise about half (53.1%) of the stems sampled and the majority (63.1%) of the basal area of native woody plant in the island’s native forests. About half of that latter biomass figure comprises species for which the flying fox is the exclusive native vertebrate frugivore and seed disperser. Plants disseminated by the flying fox are typically large trees with large fruit and seeds. These trees are often key components of the canopy, therefore fulfilling structural engineer roles that provide resources and conditions for the survival of many forest species. The flying fox plays a disproportionally large ecological role in maintaining forest structure and biodiversity in the long-term. Consequently, lethal approaches to the conflict with fruit-farmers threaten not only an endangered species, but ecological processes central to the viability of native forests. Our findings highlight the importance of including the ecological costs of culling in decision-making processes intended to resolve human-wildlife conflicts.     

Flying foxes as carriers of pathogenic Leptospira species

Recent serologic studies have identified flying foxes (Pteropus spp.) as carriers of leptospirosis; however, little is known about the role of flying foxes as carriers of pathogenic Leptospira spp. To determine if Australian Pteropus spp. are carriers of pathogenic Leptospira spp., TaqMan real-time polymerase chain reaction (PCR) was used to detect leptospiral DNA in kidney and urine specimens from four species of flying fox, including the spectacled flying fox (Pteropus conspicillatus), black flying fox (Pteropus alecto), grey-headed flying fox (Pteropus poliocephalus), and little red flying fox (Pteropus scapulatus). Of the 173 kidney samples tested, 19 (11%) were positive for leptospiral DNA. Positive individuals were detected in all four species; significant differences in prevalence were not detected between species, between species within the same geographic area, or between geographically separated samples from the same species. Of the 46 urine samples tested, 18 (39%) tested positive by PCR, confirming that flying foxes shed leptospires into the environment. The detection of leptospiral DNA in the kidneys and urine of flying foxes suggests that flying foxes are carriers of pathogenic Leptospira spp. No evidence collected in the present study, however, suggests that flying foxes pose a significant risk of leptospirosis to the wider community or that humans who are in regular, close contact with flying foxes are at risk for leptospirosis.     

Genetic analysis of populations of the threatened bat <Emphasis Type="Italic">Pteropus mariannus</Emphasis>

The Mariana flying fox (Pteropus mariannus) has suffered substantial decline in recent years. Taxonomic classification of P. mariannus has been inconsistent, with subspecies designations based mainly on geography and morphological variation within small sample sizes. In this study, we examine relationships of P. mariannus across two island groups in the western Pacific Ocean. Microsatellite data and mitochondrial sequences, from D-loop, cytochrome oxidase I, and cytochrome b, suggest that the population on the islands of Palau is genetically isolated from the populations in the Mariana Islands. Our data confirm that the bats of Palau should be considered a separate conservation unit from the bats of the Mariana Islands, supporting the current subspecies separation of these two populations. Our results also suggest that there is gene flow among islands within the Mariana archipelago and that the bats on these islands, currently classified as two subspecies, should be managed as a single conservation unit, although we refrain from suggesting taxonomic revisions until genetic and morphological data become available from geographically intermediate populations.     

Impacts of an invasive ant species on roosting behavior of an island endemic flying‐fox

Introduced species can cause major disruptions to ecosystems, particularly on islands. On Christmas Island, the invasive yellow crazy ant (Anoplolepis gracilipes) has detrimental impacts on many animals ranging from the iconic red crabs (Gecarcoidea natalis) to the Christmas Island Thrush (Turdus poliocephalus erythropleurus). However, the full extent of its effects on the island's fauna is not yet known. In this study, we investigated the impact of the yellow crazy ants on the island's last native mammal: the Christmas Island flying‐fox (Pteropus natalis). This species has been described as a keystone species, but has recently experienced substantial population decline to the extent that it is now listed as Critically Endangered. We examined the impacts of the yellow crazy ants on the roosting behavior of the Christmas Island flying‐fox, and on its local and island‐wide distribution patterns. We showed that the crazy ants increased behaviors in the flying‐foxes that were associated with avoidance of noxious stimuli and decreased behaviors associated with resting. Roost tree selection and roost site location were not related to variation in the abundance of crazy ants on the island. Our results indicate that the crazy ants interfere with the activity budgets of the flying‐foxes. However, the flying‐foxes failed to relocate to ant‐free roost trees or roost sites when confronted with the noxious ant, suggesting that the flying‐foxes are either not sufficiently disturbed to override strong cultural attachment to roosts, or, are behaving maladaptively due to ecological naïveté.     

Geographical distribution pattern and interisland movements of Orii’s flying fox in Okinawa Islands, the Ryukyu Archipelago, Japan

The study of mobile animals such as flying foxes in insular habitats involves clarifying the population status on each island and determining the factors affecting movement patterns among the islands in their distributional range. We visited 25 of the Okinawa Islands and documented the number of Orii’s flying foxes Pteropus dasymallus inopinatus from August 2005 to May 2006. We also conducted a monthly road census on the main island (Okinawa-jima Island) and six adjacent islands from June 2006 to January 2007 and counted the number of fruit-bearing trees of the bats’ four main food plants. The results of classification and regression tree analysis suggested that distance from the main island was a primary factor in determining the distribution pattern and population size of this flying fox, whereas island area, number of plant species, and food availability did not directly affect population size. The number of flying foxes on each island tended to decrease with an increase in distance from the main island; no flying foxes existed on islands >30 km away from the main island. On the other hand, the results of the monthly census showed that the population size on each island fluctuated seasonally. Individuals may move between islands in response to seasonal changes in food availability. In conclusion, the distribution and abundance of Orii’s flying foxes in the Okinawa Islands may be determined by the rate of immigration/emigration, depending on each island’s distance from the main island. Seasonal changes in food availability may act as a trigger for interisland movement, but that movement may be restricted by island connectivity.     

Preference of an insular flying fox for seed figs enhances seed dispersal of a dioecious species

Interactions among multiple species form complex networks of interdependences and are considered primary factors in the generation and maintenance of biodiversity. Pteropodid bats are keystone species that provide important ecosystem services of pollination and seed dispersal in the tropics and subtropics. In this study, we investigated the utilization and preference of food resources by the insular frugivorous flying fox Pteropus dasymallus. We found that fig species constituted the major portion of the diet of the flying fox (94.6%). When foraging, the flying fox preferred seed figs from female trees over gall figs from male trees in functionally dioecious fig species. Germination experiments showed a significantly higher percentage of germination for fig seeds in feces than those from pellets and ripe figs (feces: 80.2%, pellets: 23.4%, ripe figs: 32.9%). Considering the active selection of seed figs and avoidance of gall figs by foraging flying foxes, we suggest that the abundance of seed figs accurately represents food availability for dioecy. This preference for seed figs or viable seeds can effectively promote the survival of pollinating wasps and might reinforce the evolution of dioecism in figs. In addition, the effects of gut passage on seed germination, in combination with the capacity of flying foxes to travel long distances, may substantially contribute to the efficiency of flying foxes as seed dispersers.     

Identifying Hendra virus diversity in pteropid bats

Hendra virus (HeV) causes a zoonotic disease with high mortality that is transmitted to humans from bats of the genus Pteropus (flying foxes) via an intermediary equine host. Factors promoting spillover from bats to horses are uncertain at this time, but plausibly encompass host and/or agent and/or environmental factors. There is a lack of HeV sequence information derived from the natural bat host, as previously sequences have only been obtained from horses or humans following spillover events. In order to obtain an insight into possible variants of HeV circulating in flying foxes, collection of urine was undertaken in multiple flying fox roosts in Queensland, Australia. HeV was found to be geographically widespread in flying foxes with a number of HeV variants circulating at the one time at multiple locations, while at times the same variant was found circulating at disparate locations. Sequence diversity within variants allowed differentiation on the basis of nucleotide changes, and hypervariable regions in the genome were identified that could be used to differentiate circulating variants. Further, during the study, HeV was isolated from the urine of flying foxes on four occasions from three different locations. The data indicates that spillover events do not correlate with particular HeV isolates, suggesting that host and/or environmental factors are the primary determinants of bat-horse spillover. Thus future spillover events are likely to occur, and there is an on-going need for effective risk management strategies for both human and animal health.     

Recent invasion of European red foxes (Vulpes vulpes) on to Fraser Island (K'gari) and South Stradbroke Island

Invasive predators are globally significant drivers of threatened fauna population decline and extinction, and the early detection of new incursions is critical to the chances of successful predator eradication and fauna conservation. Here, we provide evidence of the recent invasion of European red foxes (Vulpes vulpes) on to two large and internationally significant islands off the southeast coast of Queensland, Australia – Fraser Island (K'gari) and South Stradbroke Island. From camera trap footage collected on Fraser Island since 2009, foxes have now been observed on seven different occasions between 2012 and 2016. Two scats collected on South Stradbroke Island in 2013 and 2014 tested positive for fox DNA (and negative for Canis spp. DNA), with fox presence confirmed by subsequent camera trap footage in 2016. These data confirm the recent incursion of foxes on to these islands and suggest that small populations now exist there. Fraser Island and South Stradbroke Island represent key RAMSAR wetland areas of refuge for populations of multiple threatened fauna that have never been previously been exposed to foxes. Fox impacts on these fauna can only be expected to increase without management intervention to eradicate them before they become widespread.     

Possible contemporary evolution in an endangered species, the Santa Cruz Island fox

An ability to mount rapid evolutionary responses to environmental change may be necessary for species persistence in a human-dominated world. We present evidence of the possibility of such contemporary evolution in the anti-predator behaviour of the critically endangered Santa Cruz Island fox Urocyon littoralis . In 1994, golden eagles colonized Santa Cruz Island, CA and devastated the predator-naïve, endemic island fox population by 95% within 10 years. In 1992, just before the arrival of golden eagles, foxes showed substantial diurnal activity, but diurnal activity was 37.0% lower in 2003–2007, after golden eagle colonization; concurrently, overall activity declined and nocturnal activity increased. Moreover, on nearby Santa Catalina Island, where golden eagles were absent but where the fox population recently crashed due to a disease epidemic, remaining foxes were significantly more diurnally active than were those on Santa Cruz Island. The weight of evidence suggests that the change in activity pattern was a response to predation, not to low population density, and that this was probably a heritable rather than a learned behavioural trait. This behavioural change may allow for prolonged island fox persistence, but also potentially represents a loss of behavioural diversity in fox populations.     

Conventional wisdom on roosting behavior of Australian flying‐foxes—A critical review,and evaluation using new data

1. Fruit bats (Family: Pteropodidae) are animals of great ecological and economic importance, yet their populations are threatened by ongoing habitat loss and human persecution. A lack of ecological knowledge for the vast majority of Pteropodid species presents additional challenges for their conservation and management.
2. In Australia, populations of flying‐fox species (Genus: Pteropus) are declining and management approaches are highly contentious. Australian flying‐fox roosts are exposed to management regimes involving habitat modification, through human–wildlife conflict management policies, or vegetation restoration programs. Details on the fine‐scale roosting ecology of flying‐foxes are not sufficiently known to provide evidence‐based guidance for these regimes, and the impact on flying‐foxes of these habitat modifications is poorly understood.
3. We seek to identify and test commonly held understandings about the roosting ecology of Australian flying‐foxes to inform practical recommendations and guide and refine management practices at flying‐fox roosts.
4. We identify 31 statements relevant to understanding of flying‐fox roosting structure and synthesize these in the context of existing literature. We then contribute a contemporary, fine‐scale dataset on within‐roost structure to further evaluate 11 of these statements. The new dataset encompasses 13‐monthly repeat measures from 2,522 spatially referenced roost trees across eight sites in southeastern Queensland and northeastern New South Wales.
5. We show evidence of sympatry and indirect competition between species, including spatial segregation of black and grey‐headed flying‐foxes within roosts and seasonal displacement of both species by little red flying‐foxes. We demonstrate roost‐specific annual trends in occupancy and abundance and provide updated demographic information including the spatial and temporal distributions of males and females within roosts.
6. Insights from our systematic and quantitative study will be important to guide evidence‐based recommendations on restoration and management and will be crucial for the implementation of priority recovery actions for the preservation of these species in the future.

     

Enriching agroecosystems with fruit-producing tree species favors the abundance and richness of frugivorous and nectarivorous bats in Veracruz, Mexico

We evaluated how the abundance and richness of frugivorous and nectarivorous bat species differs among three types of common agroecosystems (diversified coffee plantations, simple coffee plantations and pastures) in Veracruz, Mexico, that represent a gradient of structural and floristic complexity. Using mixed effects models we demonstrated that both the richness and the total abundance of bats was higher in the diversified coffee plantations. We detected similar patterns on comparing the abundance of the four most abundant bat species. Neither season nor the season-agroecosystem interaction had any effect on the comparisons made. Using multiple regressions we found that the richness of plants that are useful to both people and bats had the most explanatory power for the richness and total abundance of frugivorous and nectarivorous bats, as well as for the abundance of Carollia sowelli, Glossophaga soricina and Sturnira spp. Our results indicate that agroecosystems value for conservation of fruit and nectar-eating bats increases as the fruit-bearing trees increases. For the effective conservation of these guilds of bats in tropical agroecosystems, a strategy of diversification with fruit-bearing species is highly recommended; such a strategy would benefit both agricultural producers and wildlife.     

Lethal 1080 baiting continues to reduce European Red Fox (Vulpes vulpes) abundance after more than 25 years of continuous use in south‐west Western Australia

European Red Fox (Vulpes vulpes) baiting with 1080 poison (sodium fluoroacetate) is undertaken in many Australian sites to reduce fox abundance and to protect vulnerable native species from predation. The longest continuous use of fox baiting for fauna conservation commenced in south‐west Western Australia in the 1980s and includes baiting Dryandra Woodland and Tutanning Nature Reserve. The trap success of the Woylie (Bettongia penicillata) in these two reserves initially increased more than 20‐fold after the commencement of baiting and was maintained until 2000. Woylie captures then decreased rapidly, despite ongoing fox baiting, so the long‐term efficacy of 1080 baiting was questioned. Here, fox density and probabilities of detection, re‐detection and survival between replicated baited and unbaited sites were compared by modelling capture–recapture of individual foxes. These were identified from microsatellite DNA genotypes obtained non‐invasively from hair, scat and saliva samples. The frequency and duration of fox residencies were also quantified. Remote cameras were used to determine the fate of baits but uptake by foxes was low, whereas nontarget species' bait uptake was high. Nevertheless, foxes inhabiting baited reserves had significantly higher mortality, shorter residency times, and 80% lower density than foxes inhabiting unbaited reserves. Baiting continues to significantly reduce fox abundance after more than 25 years of continuous use. This has positive implications for fox control programmes throughout Australia but reduced fox abundance may facilitate increased predation by feral Cats (Felis catus).