高寒草甸高原早熟禾个体性状对放牧与围封的响应

植物对放牧的响应是植物在响应过程中为生存和繁殖所形成的适应策略,研究植物表型反应对揭示草原生态系统的放牧响应机制具有重要意义。以青藏高原高寒草甸主要植物高原早熟禾(Poa alpigena)为研究对象,通过放牧和围封试验,研究其个体性状对放牧与围封的响应,旨在为草原生态系统放牧机制提供理论依据。结果表明:1)在长期放牧干扰下,除叶片数和根重外,其他性状株高、分枝数、叶长、叶宽、叶面积、茎粗、茎长、根长、根粗、穗长、总叶质量、单叶质量、茎重、穗重、全株重均出现显著变小的特征(P0.05);而短期围封对于高原早熟禾叶长、叶宽、总叶质量、单叶质量、茎重、穗重、根重等功能性状的恢复效果并不显著(P0.05),表明放牧退化草原植物性状具有保守性;2)通过构建高原早熟禾性状可塑性变化谱,发现穗重、茎重、全株重、分蘖数、茎长、株高等可塑性幅度较大,为放牧响应的敏感指标,叶片数、叶宽、茎粗、根粗的可塑性变化幅度较小,为惰性性状。     

芽胞杆菌浸种对水稻内生细菌群落结构的影响

水稻内生细菌群落是反映植株内环境是否健康稳定的重要生物学指标,芽胞杆菌是防治水稻病害的重要生防微生物。为揭示芽胞杆菌浸种处理对水稻内生细菌群落结构的影响,采用Illumina MiSeq测序的方法对水稻内生细菌的16S rRNA基因进行测序,剖析了芽胞杆菌浸种处理对不同水稻组织内生细菌的微生态调控作用。结果表明,3种芽胞杆菌浸种处理可以提高水稻根和茎部内生细菌群落的丰富度和均匀度,降低叶部内生细菌群落的丰富度和均匀度,显著增加根部内生细菌群落多样性。变形菌门(Proteobacteria)、厚壁菌门(Firmicutes)和拟杆菌门(Bacteroidetes)是水稻根部和茎部共有优势菌门,厚壁菌门和芽胞杆菌属(Bacillus)是叶部共有优势菌门和属。芽胞杆菌浸种处理显著提高了叶部内生厚壁菌门和芽胞杆菌属的相对丰度,增加了根系和茎部组织内生细菌的分类单元OTU(Operational Taxonomic Units)数量,对叶部组织影响不明显;降低了茎部和叶部中参与各种代谢通路的内生细菌丰度,显著增加了根部参与代谢通路的内生细菌丰度。因此,3种芽胞杆菌浸种处理可以显著改变水稻根部、茎部和叶部内生细菌群落结构,改善水稻生长的微生态环境。     

Optimization of induction and culture conditions and tropane alkaloid production in hairy roots of <Emphasis Type="Italic">Anisodus acutangulus</Emphasis>

In this study, an efficient transformation system for the medicinal plant Anisodus acutangulus was successfully developed and optimized using Agrobacterium rhizogenes. Three bacterial strains, A4, R1601, and modified C58C1 and three explant types, leaf blade, petiole, and stem, were examined. The highest transformation efficiency of 94.44% was achieved using strain C58C1 with stem explants. Over 20 independent hairy root lines were successfully established with strain C58C1 using stem explants, all of which contained the ro/B and ro/C genes as confirmed by polymerase chain reaction (PCR). Out of four media compositions, the liquid 1/2 MS medium was found the most suitable for hairy root growth. The maximum biomass of one hairy root line increased up to 80 times in liquid 1/2 MS medium after a 30 day culture period. Different hairy root lines displayed a varied capacity for tropane alkaloid production and the best hairy root line (T4) from the C58C1-stem combination produced up to 10.21 mg/g (dw) of hyoscyamine, which was about 1.5-fold higher than in the wild type plants. To our knowledge, this is the first report to demonstrate the production of tropane alkaloids in hairy roots of A. acutangulus.     

Characteristics and Diversity of Endophytic Bacteria in Endangered Chinese Herb Glehnia littoralis Based on Illumina Sequencing

Glehnia littoralis is an endangered medicinal plant growing in the coastal ecological environment and plays an important role in coastal ecosystems. The endophytes in the plant have a significant role in promoting plant growth and enhancing plant stress resistance. However, the endophytic bacterial structure associated with halophyte G. littoralis is still not revealed. In this project, the construction and diversity of endophytic bacterial consortium associated with different tissues of G. littoralis were illustrated with high throughput sequencing of the V3-V4 region of the bacterial 16S rRNA. The results resolved that the diversity and richness of endophytic bacteria were significantly higher in root than in leaf and stem. The operational taxonomic units (OTU) analysis demonstrated that the Actinobacteria and Proteobacteria were dominant in all the samples at the phylum level, and Pseudomonas, Bacillus, Rhizobium were the dominant genera. Our results unraveled that the bacterial communities differed among different tissues of G. littoralis. Endophytic bacterial communities in leaf and stem shared more similarity than that in the root. Furthermore, the difference of bacteria community and structure among different tissues were also detected by principal coordinate analysis. Taken altogether, we can conclude that the bacterial communities of different tissues are unique, which could facilitate understanding the diversity of endophytic bacteria in G. littoralis.Key words: Glehnia littoralis, halophyte, endophytic bacteria, diversity, Illumina sequencing     

Phenotypic plasticity of <Emphasis Type="Italic">Chenopodium murale</Emphasis> across contrasting habitat conditions in peri-urban areas in Indian dry tropics: Is it indicative of its invasiveness?

Phenotypic plasticity is an important plant trait associated with invasiveness of alien plants that reflects its ability to occupy a wide range of environments. We investigated the phenotypic response of Chenopodium murale to resource variability and ontogeny. Its plant-level and leaf-level traits were studied at high-resource (HR) and low-resource (LR) sites in peri-urban areas in Indian dry tropics. Plants at LR had significantly higher root length, root/shoot biomass ratio, stem mass and root mass fractions. Plants at HR had higher shoot length, basal diameter, leaf mass fraction and leaf area ratio. Leaf-level traits like leaf area and chlorophyll a were also higher here. Mean plasticity indices for plant- and leaf-level traits were higher at HR. With increasing total plant biomass, there was significant increase in the biomass of leaf, stem, root, and reproductive parts, and root and shoot lengths, whereas root/shoot length ratio, their biomass ratio, and leaf and root mass fractions declined significantly. Allocation to roots and leaves significantly decreased with increasing plant size at both sites. But, at any size, allocation to roots was greater at LR, indicative of optimization of capture of soil nutrients, whereas leaf allocation was higher at HR. Consistently increasing stem allocation equaled leaf allocation at comparatively higher shoot lengths at HR. Reproductive biomass comprised 10–12% of the plant’s total biomass. In conclusion, the success of alien weed C. murale across environmentally diverse habitat conditions in Indian dry tropics can be attributed to its high phenotypic plasticity, resource utilization capability in low-resource habitats and higher reproductive potential. These characteristics suggest that it will continue to be an aggressive invader.     

Characterization of rhizosphere and endophytic bacterial communities from leaves,stems and roots of medicinal Stellera chamaejasme L.

A diverse array of bacteria that inhabit the rhizosphere and different plant organs play a crucial role in plant health and growth. Therefore, a general understanding of these bacterial communities and their diversity is necessary. Using the 16S rRNA gene clone library technique, the bacterial community structure and diversity of the rhizosphere and endophytic bacteria in Stellera chamaejasme compartments were compared and clarified for the first time. Grouping of the sequences obtained showed that members of the Proteobacteria (43.2%), Firmicutes (36.5%) and Actinobacteria (14.1%) were dominant in both samples. Other groups that were consistently found, albeit at lower abundance, were Bacteroidetes (2.1%), Chloroflexi (1.9%), and Cyanobacteria (1.7%). The habitats (rhizosphere vs endophytes) and organs (leaf, stem and root) structured the community, since the Wilcoxon signed rank test indicated that more varied bacteria inhabited the rhizosphere compared to the organs of the plant. In addition, correspondence analysis also showed that differences were apparent in the bacterial communities associated with these distinct habitats. Moreover, principal component analysis revealed that the profiles obtained from the rhizosphere and roots were similar, whereas leaf and stem samples clustered together on the opposite side of the plot from the rhizosphere and roots. Taken together, these results suggested that, although the communities associated with the rhizosphere and organs shared some bacterial species, the associated communities differed in structure and diversity.     

Stem, branch and leaf biomass-density relationships in forest communities

Defining and quantifying biomass?Cdensity relationships in dense plant stands has been a long-standing issue in both theoretical and empirical studies. Most existing/traditional studies focus on whole plant individuals, without considering different plant components (e.g., stem, branch and leaf). However, the analysis of biomass?Cdensity relationships for different plant parts is linked to those for whole plants, and thus important for understanding plant strategies for utilizing resources and community dynamics. In our study, we investigated standing stem (M _S), branch (M _B) and leaf (M _L) biomass?Cdensity relationships, across a range of forest communities in China. The results showed that there was no constant predicted value (e.g., ?1/2 or ?1/3 for M _S; ?1/2, ?1/3 or 0 for M _B and M _L) that can describe all the relationships, and that the scaling exponents for stem, branch and leaf biomass varied across different forest types. In particular, standing leaf biomass (leaf biomass per unit area) was not constant in these forest communities. Furthermore, stem biomass?Cdensity lines were steeper than corresponding branch and leaf lines across most of these forest communities.     

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Microbial communities in plant roots provide critical links between above‐ and belowground processes in terrestrial ecosystems. Variation in root communities has been attributed to plant host effects and microbial host preferences, as well as to factors pertaining to soil conditions, microbial biogeography and the presence of viable microbial propagules. To address hypotheses regarding the influence of plant host and soil biogeography on root fungal and bacterial communities, we designed a trap‐plant bioassay experiment. Replicate Populus, Quercus and Pinus plants were grown in three soils originating from alternate field sites. Fungal and bacterial community profiles in the root of each replicate were assessed through multiplex 454 amplicon sequencing of four loci (i.e., 16S, SSU, ITS, LSU rDNA). Soil origin had a larger effect on fungal community composition than did host species, but the opposite was true for bacterial communities. Populus hosted the highest diversity of rhizospheric fungi and bacteria. Root communities on Quercus and Pinus were more similar to each other than to Populus. Overall, fungal root symbionts appear to be more constrained by dispersal and biogeography than by host availability.     

放牧践踏对黄蒿功能性状的影响

植物功能性状是构成植物个体的基础,从性状角度揭示植物个体特征的变化机制尤为重要。该研究以半干旱沙质草地优势草本植物黄蒿为研究对象,探讨不同践踏强度在生长季早期对其功能性状的影响。结果表明：(1)在群落水平上,放牧践踏显著降低了生长季早期植物群落高度;而在个体水平上,黄蒿株高不是响应放牧践踏的敏感性状。(2)黄蒿的叶长、叶宽随践踏强度增加呈先增加后减少的趋势,在中度践踏强度下达到最高;茎直径随践踏强度的增加而增加;根系和全株性状随践踏强度增加无显著差异。(3)黄蒿的叶片长度、叶片宽度、单叶面积随叶片厚度的增加而减小,且叶片与一级根数目、根茎叶生物量之间均呈显著正相关关系;放牧践踏会影响黄蒿茎直径,但对其他表型性状没有显著影响;在生长发育过程中,黄蒿通过不同表型性状的非对称变化进行性状之间的权衡,践踏强度的增加对生长季早期黄蒿根茎叶生物量积累的影响很小。研究认为,黄蒿在生长季早期对放牧践踏具有较强的抵抗力,这对生长季早期半干旱沙地放牧压力的选择和物种保护具有重要的指导意义。     

Bioremediation of Atmospheric Hydrocarbons via Bacteria Naturally Associated with Leaves of Higher Plants

Bacteria associated with leaves of sixteen cultivated and wild plant species from all over Kuwait were analyzed by a culture-independent approach. This technique depended on partial sequencing of 16S rDNA regions in total genomic DNA from the bacterial consortia and comparing the resulting sequences with those in the GenBank database. To release bacterial cells from leaves, tough methods such as sonication co-released too much leaf chloroplasts whose DNA interfered with the bacterial DNA. A more satisfactory bacterial release with a minimum of chloroplast co-release was done by gently rubbing the leaf surfaces with soft tooth brushes in phosphate buffer.

The leaves of all plant species harbored on their surfaces bacterial communities predominated by hydrocarbonoclastic (hydrocarbon-utilizing) bacterial genera. Leaves of 6 representative plants brought about in the laboratory effective removal of volatile hydrocarbons in sealed microcosms. Each individual plant species had a unique bacterial community structure. Collectively, the phyllospheric microflora on the studied plants comprised the genera Flavobacterium, Halomonas, Arthrobacter, Marinobacter, Neisseria, Ralstonia, Ochrobactrum. Exiguobacterium, Planomicrobium, Propionibacterium, Kocuria, Rhodococcus and Stenotrophomonas. This community structure was dramatically different from the structure we determined earlier for the same plants using the culture-dependent approach, although in both cases, hydrocarbonoclastic bacteria were frequent.     

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

Diverse communities of bacteria inhabit plant leaves and roots and those bacteria play a crucial role for plant health and growth. Arabidopsis thaliana is an important model to study plant pathogen interactions, but little is known about its associated bacterial community under natural conditions. We used 454 pyrosequencing to characterize the bacterial communities associated with the roots and the leaves of wild A. thaliana collected at 4 sites; we further compared communities on the outside of the plants with communities in the endophytic compartments. We found that the most heavily sequenced bacteria in A. thaliana associated community are related to culturable species. Proteobacteria, Actinobacteria, and Bacteroidetes are the most abundant phyla in both leaf and root samples. At the genus level, sequences of Massilia and Flavobacterium are prevalent in both samples. Organ (leaf vs root) and habitat (epiphytes vs endophytes) structure the community. In the roots, richness is higher in the epiphytic communities compared to the endophytic compartment (P = 0.024), while the reverse is true for the leaves (P = 0.032). Interestingly, leaf and root endophytic compartments do not differ in richness, diversity and evenness, while they differ in community composition (P = 0.001). The results show that although the communities associated with leaves and roots share many bacterial species, the associated communities differ in structure.     

Induction of <Emphasis Type="Italic">Gentiana cruciata</Emphasis> hairy roots and their secondary metabolites

Gentiana cruciata L. (cross gentian) is a medicinal and ornamental plant. The root extracts of this species are known to exhibit many curative properties. The natural Gentiana populations are exposed to great danger because of their uncontrolled usage. In this study, hairy roots from Gentiana cruciata L. stem and leaf explants belonging to three different clones were induced by inoculation with four different Agrobacterium rhizogenes wild strains namely A4, 15834, 8196 and R1000. Induction of the root transformation was significantly dependent on the explant type used. On the other hand, the genotype and bacterial strain had no significant effect on hairy root formation. Hairy root formation percentages of the explants varied between 5.6–33.3% in the stem explants, and between 0.0–6.7% in the leaf explants. Transformations of the hairy roots were confirmed by PCR using rolC specific primers, and revealed the absence of contaminating A. rhizogenes with virC primers. Total of twelve hairy root clones were obtained, and their secondary metabolite content was also analyzed by HPLC. Quantitative results exhibited that gentiopicroside was the most abundant compound in all root samples. Furthermore, metabolites such as loganic acid, swertiamarin, and sweroside were also identified and quantified in the samples.     

羌塘高原降水梯度植物叶片、根系性状变异和生态适应对策

叶片和根系是植物获取资源的最重要的器官,其性状随环境梯度的变化反映了植物光合碳获取和水分与养分的吸收能力及其对环境变化适应的生态对策。羌塘高原降水梯度带高寒草地群落叶片和根系成对性状关系研究不仅能揭示环境梯度对植物性状的塑造作用,也可为理解寒、旱和贫瘠等极端环境下植物的适应策略提供依据。为此,选择3组具有代表性的叶片和根系成对性状:比叶面积(SLA)和比根长(SRL);单位质量叶氮含量(LN_(mass))和单位质量根氮含量(RN_(mass));单位面积叶氮含量(LN_(area))和单位长度根氮含量(RN_(length)),分析不同优势植物地上、地下成对性状变异特征及其与环境因子的关系,探讨植物性状对高寒生态系统水分和养分限制因素的适应策略。研究表明,区域气候和土壤环境导致的叶片性状变异大于根系性状的变异,干旱端的植物既具有高的SRL,又具有高的叶片和根系的养分含量(LN_(mass),LN_(area)和RN_(mass))。SLA-SRL、LN_(mass)-RN_(mass)、LN_(area)-RN_(length)均表现为权衡关系,在干旱端(年降雨量MAP 400 mm)的高寒草原、荒漠草原和极湿润端(MAP 600 mm)的高寒草甸这种权衡关系更为明显,而中间区域(400 MAP 600 mm)的高寒草甸养分和水分限制不是很强烈,叶片和根系性状更多地表现出协同关系。从植物功能类群来看,苔草和禾草类植物叶片和根系成对性状之间具有更强烈的权衡关系。干旱端植物通过增加SRL和叶片、根系养分含量来提高水分和养分的吸收能力,同时通过叶片高的氮含量提高光合碳获取能力,保障了根系生长的物质来源,表现出地上和地下同时投入的策略。干旱端植物保持较高的养分含量是抵御和适应严酷的寒、旱和贫瘠的环境胁迫的重要策略。而在湿润端植物则采取增加SLA,维持地上光合生产力的生态策略。     

Influence of gibberellic acid on <Superscript>14</Superscript>CO<Subscript>2</Subscript> metabolism,growth, and production of alkaloids in <Emphasis Type="Italic">Catharanthus roseus</Emphasis>

Changes in growth parameters, carbon assimilation efficiency, and utilization of ¹⁴CO₂ assimilate into alkaloids in plant parts were investigated at whole plant level by treatment of Catharanthus roseus with gibberellic acid (GA). Application of GA (1 000 g m⁻³) resulted in changes in leaf morphology, increase in stem elongation, leaf and internode length, plant height, and decrease in biomass content. Phenotypic changes were accompanied by decrease in contents of chlorophylls and in photosynthetic capacity. GA application resulted in higher % of total alkaloids accumulated in leaf, stem, and root. GA treatment produced negative phenotypic response in total biomass production but positive response in content of total alkaloids in leaf, stem, and roots. ¹⁴C assimilate partitioning revealed that ¹⁴C distribution in leaf, stem, and root of treated plants was higher than in untreated and variations were observed in contents of metabolites as sugars, amino acids, and organic acids. Capacity to utilize current fixed ¹⁴C derived assimilates for alkaloid production was high in leaves but low in roots of treated plants despite higher content of ¹⁴C metabolites such as sugars, amino acids, and organic acids. In spite of higher availability of metabolites, their utilization into alkaloid production is low in GA-treated roots.     

不同水稻组织内生细菌的群落多样性

[目的]为详细了解水稻不同组织内生细菌群落多样性。[方法]对宁粳43号内生细菌的总DNA提取后,采用高通量测序技术对水稻内生细菌的16S rRNA基因进行了序列测定,分析了水稻不同组织部位内生细菌群落结构特征。[结果]叶部共获得内生细菌OTUs 610个,茎部411个,根部174个。物种分类显示,叶部内生细菌种类隶属于22门40纲103目198科399属,其中优势类群是红球菌属（Rhodococcus）和乳酸杆菌属（Lactobacillus）,它们的相对丰度分别为21.00%和9.19%;茎部内生细菌种类隶属于19门31纲85目169科306属,其中优势类群是红球菌属和罗尔斯通菌属（Ralstonia）,它们的相对丰度分别为19.25%和13.52%;根部内生细菌种类隶属于9门19纲44目82科140属,其中优势类群是肠杆菌属（Enterobacter）和埃希氏杆菌属（Escherichia）,它们的相对丰度分别为81.13%和10.89%。根茎叶中相同的OTU有78个,放线菌门（Actinobacteria）与大多数细菌具有相关性。根系内生细菌中具有调控各种代谢网络功能的物种丰度高于茎部和叶部。[结论]不同水稻组织内生细菌具有丰富的群落多样性,其中叶部的内生细菌物种最丰富,根系参与各种代谢调控的细菌丰度最高,各个组织部位的优势菌属各不相同,变形菌门是最重要的水稻内生细菌。     

干旱胁迫对欧李幼苗表型可塑性的影响

该研究以欧李为材料,探讨了干旱胁迫对欧李表型可塑性的影响。结果表明:(1)随着干旱胁迫的加剧,欧李根生物量、枝叶生物量、植株总生物量积累、根冠比和根冠比胁迫指数均呈现先升高后降低的趋势,在T1处理下达到最大值,并显著高于其他处理(α=0.05)。(2)随土壤含水量的降低,欧李根的生物量分配指数呈现先增加后降低的趋势,叶生物量与之相反,在T1处理下根的生物量分配指数最大,枝叶的最小(α=0.05)。(3)在水分供应为60%～80%时,欧李的株高、冠幅、基径、二级分枝数、主根长、主根直径及侧根数量均达到最大值(α=0.05),对一级分枝数的生长没有显著影响。(4)随着水分胁迫的加剧,叶片长从T2处理开始下降,叶片宽、单片叶面积及比叶面积均呈现先增加后减少的趋势(α=0.05)。综上可得,欧李通过调整形态特性和各器官生物量积累及其分配对不同干旱胁迫条件产生了较强的可塑性。     

红海榄内生细菌多样性及其抑制鱼类致病菌活性研究

红海榄为红树科红海属植物,广泛分布于热带海岸的红树林中,为真红树植物的典型代表。该研究以广西山口红树林国家级自然保护区红海榄为对象,应用稀释涂布法和三线法从红海榄各组织中分离出17株内生细菌,通过各菌株形态特征观察及利用16S rRNA序列基因和韦恩图分析其内生细菌多样性。结果表明:17株内生细菌分属3个门5科7属8种,Micromonospora和Mangrovibacter属为其优势类群。进一步分析发现红海榄根茎叶等组织的内生细菌类群差别较大,仅有1个相同菌属,17株菌中有3株菌与已有细菌物种典型菌株的全长16S rRNA基因相似性低于97%,代表着潜在的新属或新种。运用纸片法研究8株内生细菌发酵液的乙酸乙酯提取物对鱼类致病菌副溶血弧菌活性抑制效果,发现3株内生细菌(H003、H013、H009,浓度5 mg·m L-1)的代谢产物对副溶血弧菌具有较强的抑菌活性,其抑菌圈直径分别达到(8.4±0.07)、(8.2±0.07)、(8.3±0.14)mm。该研究结果表明红海榄中具有较好的内生细菌多样性和抑菌活性,为今后研究其内生细菌的化学多样性及其应用提供了重要的物质基础。     

矮嵩草草甸主要植物不同器官对氮素的吸收及分配特征研究

以高寒矮嵩草(Kobresia humilis)草甸7个主要植物种为研究对象,利用15 N同位素标记技术,通过分析不同器官对氮素的吸收及分配特征,揭示主要植物种在群落中的生态适应性、竞争力和地位。结果显示:(1)矮嵩草的叶和茎、垂穗披碱草(Elymus nutans)的叶,以及双柱头藨草(Scirpus distigmaticus)和鹅绒委陵菜(Potentilla anserina)的叶、茎、根均偏好累积硝态氮,早熟禾(Poa annua)的穗和叶以及甘肃马先蒿(Pedicularis kansuensis)和短穗兔耳草(Lagotis brachystachya)的根均偏好积累铵态氮。(2)矮嵩草对吸收的甘氨酸和硝态氮主要分配于叶中,铵态氮分配于茎中;双柱头藨草对吸收的甘氨酸和硝态氮主要分配于茎中,铵态氮分配于叶中;垂穗披碱草和早熟禾对吸收的硝态氮和铵态氮主要分配于叶中;垂穗披碱草对吸收的甘氨酸主要分配于根中,而早熟禾将较多的甘氨酸分配到穗中;甘肃马先蒿对吸收的硝态氮主要分配于叶中,铵态氮分配于根中;鹅绒委陵菜对吸收的甘氨酸、硝态氮和铵态氮主要分配于叶中;短穗兔耳草对吸收的甘氨酸主要分配于叶中,硝态氮和铵态氮主要分配于根中。(3)在牧草生长盛期,矮嵩草草甸土壤的有机氮和无机氮主要贡献于甘肃马先蒿的花、早熟禾的穗、垂穗披碱草的根和鹅绒委陵菜的茎叶。研究表明,高寒矮嵩草草甸主要植物不同器官对氮素的吸收及分配呈现多元化特征,因不同植物种的生物学特性和生态适应习性而异。     

Meta‐barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition

This study was designed to assess the influence of three soil DNA extraction procedures, namely the International Organization for Standardization (ISO‐11063, GnS‐GII and modified ISO procedure (ISOm), on the taxonomic diversity and composition of soil bacterial and fungal communities. The efficacy of each soil DNA extraction method was assessed on five soils, differing in their physico‐chemical characteristics and land use. A meta‐barcoded pyrosequencing approach targeting 16S and 18S rRNA genes was applied to characterize soil microbial communities. We first observed that the GnS‐GII introduced some heterogeneity in bacterial composition between replicates. Then, although no major difference was observed between extraction procedures for soil bacterial diversity, we saw that the number of fungal genera could be underestimated by the ISO‐11063. In particular, this procedure underestimated the detection in several soils of the genera Cryptococcus, Pseudallescheria, Hypocrea and Plectosphaerella, which are of ecological interest. Based on these results, we recommend using the ISOm method for studies focusing on both the bacterial and fungal communities. Indeed, the ISOm procedure provides a better evaluation of bacterial and fungal communities and is limited to the modification of the mechanical lysis step of the existing ISO‐11063 standard.     

Photosynthetic Adaptation of Solanum dulcamara L. to Sun and Shade Environments: II. Physiological Characterization of Phenotypic Response to Environment

Photosynthetic and growth properties of Solanum dulcamara L. were studied under controlled environments. The 200 experimentally tested plants were clonal replicates of five field-collected individuals, three from fully exposed habitats and two from deeply shaded habitats. After 4 weeks of growth in one of eight environmental treatments, each plant was measured for leaf adaxial and abaxial conductance to water vapor, specific leaf weight, chlorophyll per square decimeter of leaf, photosynthetic unit size, light-saturated photosynthetic rate, total leaf area, and total leaf, stem, and root dry weights. Changes in light level influenced photosynthesis and growth of each plant more than changes in water availability or temperature. It is strongly suggested that the primary adaptive response of the tested individuals to changes in levels of light involves the regulation of leaf thickness.