林木根呼吸及测定方法进展

 森林土壤呼吸的近2/3是由林木根呼吸产生的,林木根呼吸对估计森林C吸存及构建森林生态系统碳动态模型有重要意义,是全球碳循环研究的一个重要组成部分。林木根呼吸包括生长呼吸和维持呼吸,不同森林生态系统林木根呼吸对土壤呼吸的贡献大多在40%～60%范围内,林木根呼吸在生长季节较高而休眠季节较低。测定林木根呼吸的主要方法有排除根法、离体根法、同位素法和原位PVC管气室法,前两者相对简单、成本低,常用于森林生态系统中;同位素法可原位测定根呼吸,对土壤干扰较小,但不易操作,且成本高。根呼吸受土壤温度、根直径大小、根组织N浓度、环境CO2浓度、土壤湿度、养分有效性等因素的影响。今后的研究应集中在以下方面：1）探讨和比较不同条件下测定根呼吸组成（生长呼吸、维持呼吸）的最合适方法;2）加大在野外条件下使用有效方法分离根呼吸和根际微生物呼吸的力度;3）对森林生态系统根呼吸动态进行长期的定位研究;4）进一步加强研究不同气候带,不同森林类型林木根呼吸,并将研究尺度从气室扩大到区域或全球水平;5）加强林木根呼吸对全球变化的响应及机制的研究;6)对林木根呼吸进行多学科合作研究将为全球C循环做出新的贡献。     

Film Reviews

Book reviewed in this article:
The Tree of Iron . 1988. A film by Peter O'Neill, Frank Muhly, Jr ., and Peter Schmidt
The Blooms of Banjeli: Technology and Gender in African Ironmaking . 1986. A film by Carlyn Saltman, Candice Goucher , and Eugenia Herbert     

Current and Potential Tree Locations in Tree Line Ecotone of Changbai Mountains,Northeast China: The Controlling Effects of Topography

Tree line ecotone in the Changbai Mountains has undergone large changes in the past decades. Tree locations show variations on the four sides of the mountains, especially on the northern and western sides, which has not been fully explained. Previous studies attributed such variations to the variations in temperature. However, in this study, we hypothesized that topographic controls were responsible for causing the variations in the tree locations in tree line ecotone of the Changbai Mountains. To test the hypothesis, we used IKONOS images and WorldView-1 image to identify the tree locations and developed a logistic regression model using topographical variables to identify the dominant controls of the tree locations. The results showed that aspect, wetness, and slope were dominant controls for tree locations on western side of the mountains, whereas altitude, SPI, and aspect were the dominant factors on northern side. The upmost altitude a tree can currently reach was 2140 m asl on the northern side and 2060 m asl on western side. The model predicted results showed that habitats above the current tree line on the both sides were available for trees. Tree recruitments under the current tree line may take advantage of the available habitats at higher elevations based on the current tree location. Our research confirmed the controlling effects of topography on the tree locations in the tree line ecotone of Changbai Mountains and suggested that it was essential to assess the tree response to topography in the research of tree line ecotone.     

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

Using a simple example and simulations, we explore the impact of input tree shape upon a broad range of supertree methods. We find that input tree shape can affect how conflict is resolved by several supertree methods and that input tree shape effects may be substantial. Standard and irreversible matrix representation with parsimony (MRP), MinFlip, duplication-only Gene Tree Parsimony (GTP), and an implementation of the average consensus method have a tendency to resolve conflict in favor of relationships in unbalanced trees. Purvis MRP and the average dendrogram method appear to have an opposite tendency. Biases with respect to tree shape are correlated with objective functions that are based upon unusual asymmetric tree-to-tree distance or fit measures. Split, quartet, and triplet fit, most similar supertree, and MinCut methods (provided the latter are interpreted as Adams consensus-like supertrees) are not revealed to have any bias with respect to tree shape by our example, but whether this holds more generally is an open problem. Future development and evaluation of supertree methods should consider explicitly the undesirable biases and other properties that we highlight. In the meantime, use of a single, arbitrarily chosen supertree method is discouraged. Use of multiple methods and/or weighting schemes may allow practical assessment of the extent to which inferences from real data depend upon methodological biases with respect to input tree shape or size.     

Do Property Rights Matter for Conservation? Family Land, Forests and Trees in Saint Lucia, West Indies

Property rights are a central topic in conservation debates, but their influence on environmental outcomes is rarely carefully assessed. This study compared land use, tree planting practices and arboreal vegetation on government, estate private, smallholder private and communal ??family?? lands in Saint Lucia. The influence of tenure was apparent, but overall not a strong predictor of either farmer practices or vegetation characteristics. Higher abundance of planted trees on smallholder private lands was offset by greater abundance of natural forest trees on estate and family lands. Tree planting and abandonment of cultivation (with ensuing afforestation) were commonplace on all three types of land. The influence of tenure was swamped by other factors shaping farmer decisions to plant trees, cut trees or abandon cultivation, including local topography and changing commodity and labor markets. Findings from this study challenge the assumption that property rights necessarily determine resource and environmental outcomes.     

Cluster analysis of spatial patterns in Malaysian tree species

Tree species in tropical rain forests exhibit a rich panoply of spatial patterns that beg ecological explanation. The analysis of tropical census data typically relies on spatial statistics, which quantify the average aggregation tendency of a species. In this article we develop a cluster-based approach that complements traditional spatial statistics in the exploration and analysis of ecological hypotheses for spatial pattern. We apply this technique to six study species within a fully mapped 50-ha forest census in peninsular Malaysia. For each species we identify the scale(s) of spatial aggregation and the corresponding tree clusters. We study the correlation between cluster locations and abiotic variables such as topography. We find that the distribution of cluster sizes exhibits equilibrium and nonequilibrium behavior depending on species life history. The distribution of tree diameters within clusters also varies according to species life history. At different spatial scales, we find evidence for both niche-based and dispersal-limited processes producing spatial pattern. Our methodology for identifying scales of aggregation and clusters is general; we discuss the method's applicability to spatial problems outside of tropical plant ecology.     

Ancient oak wood-pasture as a habitat for the endangered tree pipit Anthus trivialis

Ancient wood-pastures are facing a major decline in several European countries. These habitats are of great importance for biodiversity because of their special semi-natural character that increases landscape variability and connectivity. In this paper we examine the habitat preferences of the tree pipit Anthus trivialis in an ancient oak wood-pasture, the Breite Natural Reserve, central Romania, with the aim of identifying the most significant habitat variables correlated with the presence of this species. In this way, we aim to highlight the need for conservation management of both the species and this particular habitat type, which are both declining across Europe. We found that the number of oaks with a diameter at breast height (d.b.h) > 1.27 m (equating to a circumference of 4 m) was the only variable with significant positive effect on the presence of the tree pipit. Shrub cover had significant negative effect on presence. Tree canopy cover, the clumping tendency of trees and distance from forest had no effect on the presence of this species in the study area. Our results show that the habitat requirements for the maintenance of the tree pipit impose the same active management needs as those for the maintenance of the ancient wood-pasture character of the Breite Natural Reserve, namely the control against hornbeam invasion and ensured viability of new oak sapling generations.     

Biogeographic anomalies in the species richness of Chilean forests: Incorporating evolution into a climatic – historic scenario

Broad‐scale richness gradients are closely associated with temperature and water availability. However, historical and evolutionary processes have also contributed to shape current diversity patterns. In this paper we focus on the potential influences of Pleistocene glaciation and phylogenetic niche conservatism (the tendency for traits to be maintained during diversification) on the tree diversity gradient in Chile, and we quantify its primary climatic correlates. Tree species richness is greatest at mid latitudes, particularly in the Andes and Coastal ranges, and decreases abruptly to the south and north. Regression tree analysis identified annual precipitation and annual temperature as the primary probable drivers of this gradient. Ice cover during the Last Glacial Maximum was also identified as an ‘important’ variable, but the contemporary and historical predictors are strongly collinear. Geographically weighted regression indicated that the relationships between richness and environmental variables vary regionally: the relationship between tree richness and precipitation is stronger in north‐central Chile, whereas tree richness and temperature are most strongly associated in south‐central Chile. By assigning each species the age of the family to which it belongs and averaging all species in each geographical unit, we also found that species from the oldest families are distributed mainly in mid to high latitudes and species from younger families are distributed mainly at lower latitudes. This pattern is closely associated with annual precipitation. Thus, the ecological component of tree richness follows contemporary climatic gradients of both energy and water, but the aridification of the Atacama Desert was an important driver over evolutionary time. The influence of recent Pleistocene glaciation remains unresolved but it cannot be discounted.     

四川省缙云山栲树种群结构和动态的初步研究

 栲树(Castanopsis fargesii)是亚热带常绿阔叶林的建群种和优势种之一。本文应用相邻格子样方法和每木调查法进行野外抽样,对缙云山栲树种群的立木级结构和分布格局及其动态特点进行了分析,并探讨了研究长生命期常绿阔叶树种种群的方法问题。结果表明,应用立木级结构代替年龄结构研究栲树种群的结构和动态特征是适用的。立木级结构和存活曲线分析表明栲树种群具有增长型的动态特征。同时应用一次性的调查资料研究了栲树种群的分布格局及其动态特征,显示出栲树种群在其发育过程中,分布格局由集群分布向随机分布变化,而且这种变化是和种群的数量的动态变化有关。引起分布格局发生变化的主要原因是种内及种间竞争所导致的自疏和它疏。     

Branch lengths on birth-death trees and the expected loss of phylogenetic diversity

Diversification is nested, and early models suggested this could lead to a great deal of evolutionary redundancy in the Tree of Life. This result is based on a particular set of branch lengths produced by the common coalescent, where pendant branches leading to tips can be very short compared with branches deeper in the tree. Here, we analyze alternative and more realistic Yule and birth-death models. We show how censoring at the present both makes average branches one half what we might expect and makes pendant and interior branches roughly equal in length. Although dependent on whether we condition on the size of the tree, its age, or both, these results hold both for the Yule model and for birth-death models with moderate extinction. Importantly, the rough equivalency in interior and exterior branch lengths means that the loss of evolutionary history with loss of species can be roughly linear. Under these models, the Tree of Life may offer limited redundancy in the face of ongoing species loss.     

Contrasting effects of tree diversity on young tree growth and resistance to insect herbivores across three biodiversity experiments

Tree diversity is an important driver of forest ecosystem functioning, hypothesised to enhance tree growth and resistance to herbivores. To test this, we assessed the relative importance of tree species richness and functional diversity on tree height growth and insect herbivore damage across three tree diversity experiments in Finland, France and Germany, established within the last fifteen years. These experiments encompass species richness gradients from monocultures up to five species mixtures, with compositions drawn from a pool of eleven tree species. Tree height growth and total insect herbivory were evaluated at both the tree species and forest plot scales. Trees in mixtures tended to grow taller, but on average received more insect herbivory relative to monocultures. Gradients of tree species richness or functional diversity had only weak impact on the magnitude of these effects. Community weighted means of specific leaf area alone captured diversity effects on tree height growth, with stronger positive effects of diversity in mixtures with high community SLA. Tree species‐specific responses were highly variable. No species significantly benefited both in terms of increased growth and reduced herbivory when grown in mixtures. More species showed positive height growth responses in mixed assemblages, but only the two exotic conifers experienced associational resistance to herbivores. This large‐scale study shows that tree height growth in young forest plantations tends to be higher in species mixtures than in monocultures, but incremental increases in functional diversity have, at best, weak marginal growth benefits. Moreover, there appear to be contrasting effects at forest plot versus individual species scales. Thus, while some species show lower herbivore damage in mixtures, this is not a consistent trend and contrasts the higher overall damage in mixtures observed at the forest plot scale. To improve both tree growth and resistance to herbivores in tree species mixtures seems therefore challenging.     

Tree scanning: a method for using haplotype trees in phenotype/genotype association studies

We use evolutionary trees of haplotypes to study phenotypic associations by exhaustively examining all possible biallelic partitions of the tree, a technique we call tree scanning. If the first scan detects significant associations, additional rounds of tree scanning are used to partition the tree into three or more allelic classes. Two worked examples are presented. The first is a reanalysis of associations between haplotypes at the Alcohol Dehydrogenase locus in Drosophila melanogaster that was previously analyzed using a nested clade analysis, a more complicated technique for using haplotype trees to detect phenotypic associations. Tree scanning and the nested clade analysis yield the same inferences when permutation testing is used with both approaches. The second example is an analysis of associations between variation in various lipid traits and genetic variation at the Apolipoprotein E (APOE) gene in three human populations. Tree scanning successfully identified phenotypic associations expected from previous analyses. Tree scanning for the most part detected more associations and provided a better biological interpretative framework than single SNP analyses. We also show how prior information can be incorporated into the tree scan by starting with the traditional three electrophoretic alleles at APOE. Tree scanning detected genetically determined phenotypic heterogeneity within all three electrophoretic allelic classes. Overall, tree scanning is a simple, powerful, and flexible method for using haplotype trees to detect phenotype/genotype associations at candidate loci.     

Determinants of tree survival at local scale in a sub-tropical forest

Tree survival is a critical driver of stand dynamics, influencing forest structure and composition. Many local-scale drivers (tree size, abiotic and biotic factors) have been proposed as being important in explaining patterns of tree survival, but their contributions are still unknown. We examined the relative importance of these local drivers on tree survival using generalized linear mixed models in an old-growth sub-tropical forest in south China at three levels (community, guild, and species). Among the variables tested, tree size was typically the most important driver of tree survival, followed by abiotic and then biotic variables. Tree size has a strongly positive effect on tree survival for small trees (10–30 cm dbh) and shade-tolerant tree species. Of the abiotic factors tested, elevation tended to be more important in affecting tree survival than other topographic variables. Abiotic factors generally influenced survival of species with relatively high abundances, for individuals in smaller size classes and for mid-tolerant species. Among biotic factors, we found that the mortality of tree species was not driven by density- and frequency-dependent effects in this sub-tropical forest, as indicated by the results of both total basal area of neighbors and the proportion of conspecific neighbors in our study. We conclude that the relative importance of variables driving patterns of tree survival varied greatly among tree size classes, species guilds, shade tolerance, density, and abundance classes in this sub-tropical forest. These results also provide critical information for future studies of forest dynamics and offer insight into forest management in this region.     

Parental care in the Small Tree Finch Camarhynchus parvulus in relation to parasitism and environmental factors

The parental food compensation hypothesis suggests that parents may compensate for the negative effects of parasites on chicks by increased food provisioning. However, this ability differs widely among host species and may also depend on ecological factors such as adverse weather conditions and habitat quality. Although weed management can improve habitat quality, management measures can bring about a temporary decrease in food availability and thus may reduce parents’ ability to provide their nestlings with enough energy. In our study we investigated the interaction of parasitism and weed management, and the influence of climate on feeding rates in a Darwin’s tree finch species, which is negatively impacted by two invasive species. The larvae of the invasive parasitic fly Philornis downsi ingest the blood and body tissues of tree finch nestlings, and the invasive Blackberry Rubus niveus affects one of the main habitats of Darwin’s tree finches. We compared parental food provisioning of the Small Tree Finch Camarhynchus parvulus in parasitized and parasite‐free nests in three different areas, which differed in invasive weed management (no management, short‐term and long‐term management). In a parasite reduction experiment, we investigated whether the Small Tree Finch increases food provisioning rates to nestlings when parasitized and whether this ability depends on weed management conditions and precipitation. Our results provide no evidence that Small Tree Finches can compensate with additional food provisioning when parasitized with P. downsi. However, we found an increase in male effort in the short‐term management area, which might indicate that males compensate for lower food quality with increased provisioning effort. Furthermore, parental food provisioning was lower during rainfall, which provides an explanation for the negative influence of rain on breeding success found in earlier studies. Like other Darwin’s finches, the Small Tree Finch seems to lack the ability to compensate for the negative effects of P. downsi parasitism, which is one explanation for why this invasive parasite has such a devastating effect on this host species.     

Trashing life’s tree

The Tree of Life has traditionally been understood to represent the history of species lineages. However, recently researchers have suggested that it might be better interpreted as representing the history of cellular lineages, sometimes called the Tree of Cells. This paper examines and evaluates reasons offered against this cellular interpretation of the Tree of Life. It argues that some such reasons are bad reasons, based either on a false attribution of essentialism, on a misunderstanding of the problem of lineage identity, or on a limited view of scientific representation. I suggest that debate about the Tree of Cells and other successors to the traditional Tree of Life should be formulated in terms of the purposes these representations may serve. In pursuing this strategy, we see that the Tree of Cells cannot serve one purpose suggested for it: as an explanation for the hierarchical nature of taxonomy. We then explore whether, instead, the tree may play an important role in the dynamic modeling of evolution. As highly-integrated complex systems, cells may influence which lineage components can successfully transfer into them and how they change once integrated. Only if they do in fact have a substantial role to play in this process might the Tree of Cells have some claim to be the Tree of Life.     

不同去趋势方法对树轮气候信号识别的影响

树木生长受到气候因子、随年龄增长的内在生长趋势、环境干扰和其他扰动信号的影响。目前存在不同的去趋势方法对树木年轮进行去趋势以识别树木生长中的气候信号。以往的研究多基于单个方法识别树轮气候信号，而不同去趋势方法识别的树轮气候信号可能会有一定的差别。为了对比不同去趋势方法对树轮气候信号识别的影响，我们基于国际年轮数据库网站获取中国西部地区68个点的树轮宽度数据，采用最常用的"signal-free"方法（SsfCrn）、线性和负指数函数法（std）、67%样条函数法（spline）、firedman方法、以及基于经验模式分解去趋势方法（EEMD）5种去趋势方法分别建立树轮年表，并对比分析同一地点的不同年表对气候响应的异同。结果表明：不同去趋势方法得到的年表对温度、降水以及相对湿度等气候因素的响应具有明显差异。其中，SsfCrn去趋势方法建立的年表对温度（月平均温、月最低温、月平均最低温）响应中相关最高的样点在所有样点中占比最高；EEMD去趋势方法建立的年表对降水量、相对湿度和月最高温响应中相关最高的样点在所有样点中占比最高；firedman去趋势方法建立的年表对月平均最高温响应中相关最高的样点在所有样点中占比最高。研究结果表明SsfCrn，EEMD和firedman方法在识别树轮气候信号方法具有一定的优势。在不同研究区域中，不同去趋势方法建立的年表对不同气候条件响应有差异，因此选择不同的去趋势方法识别树木生长趋势，分析哪种方法可以更好的反应气候变化对树木生长的影响显得尤为重要。     

Decadal dynamics of tree cover in an Australian tropical savanna

Spatio‐temporal variation in tropical savanna tree cover remains poorly understood. We aimed to quantify the drivers of tree cover in tropical mesic savannas in Kakadu National Park by relating changes in tree cover over 40 years to: mean annual rainfall, fire activity, initial tree cover and prior changes in tree cover. Aerial photography, acquired in 1964, 1984 and 2004, was obtained for fifty sites in Kakadu that spanned a rainfall gradient from approximately 1200 to 1600 mm. The remotely sensed estimates of tree cover were validated via field survey. Linear mixed effects modelling and multi‐model inference were used to assess the strength and form of the relationships between tree cover and predictor variables. Over the 40 years, tree cover across these savannas increased on average by 4.94 ± 0.88%, but was spatio‐temporally variable. Tree cover showed a positive albeit weak trend across the rainfall gradient. The strength of this positive relationship varied over the three measurement times, and this suggests that other factors are important in controlling tree cover. Tree cover was positively related to prior tree cover, and negatively correlated with fire activity. Over 20 years tree cover was more likely to increase if (i) tree cover was initially low or (ii) had decreased in the previous 20‐year interval or (iii) there had been fewer fires. Across the examined rainfall gradient, the greater variability in fire activity and inherently higher average tree cover at the wetter latitudes resulted in greater dynamism of tree cover compared with the drier latitudes. This is consistent with savanna tree cover being determined by interactions between mean annual rainfall, tree competition and frequent fire in these tropical mesic savannas.     

Pyric tree spatial patterning interactions in historical and contemporary mixed conifer forests,California, USA

Tree spatial patterns in dry coniferous forests of the western United States, and analogous ecosystems globally, were historically aggregated, comprising a mixture of single trees and groups of trees. Modern forests, in contrast, are generally more homogeneous and overstocked than their historical counterparts. As these modern forests lack regular fire, pattern formation and maintenance is generally attributed to fire. Accordingly, fires in modern forests may not yield historically analogous patterns. However, direct observations on how selective tree mortality among pre‐existing forest structure shapes tree spatial patterns is limited. In this study, we (a) simulated fires in historical and contemporary counterpart plots in a Sierra Nevadan mixed‐conifer forest, (b) estimated tree mortality, and (c) examined tree spatial patterns of live trees before and after fire, and of fire‐killed trees. Tree mortality in the historical period was clustered and density‐dependent, because trees were aggregated and segregated by tree size before fire. Thus, fires maintained an aggregated distribution of tree groups. Tree mortality in the contemporary period was widespread, except for dispersed large trees, because most trees were a part of large, interconnected tree groups. Thus, postfire tree patterns were more uniform and devoid of moderately sized tree groups. Postfire tree patterns in the historical period, unlike the contemporary period, were within the historical range of variability identified for the western United States. This divergence suggests that decades of forest dynamics without significant disturbances have altered the historical means of pyric pattern formation. Our results suggest that ecological silvicultural treatments, such as forest restoration thinnings, which emulate qualities of historical forests may facilitate the reintroduction of fire as a means to reinforce forest structural heterogeneity.     

Climatic Stress during Stand Development Alters the Sign and Magnitude of Age-Related Growth Responses in a Subtropical Mountain Pine

The modification of typical age-related growth by environmental changes is poorly understood, In part because there is a lack of consensus at individual tree level regarding age-dependent growth responses to climate warming as stands develop. To increase our current understanding about how multiple drivers of environmental change can modify growth responses as trees age we used tree ring data of a mountain subtropical pine species along an altitudinal gradient covering more than 2,200 m of altitude. We applied mixed-linear models to determine how absolute and relative age-dependent growth varies depending on stand development; and to quantify the relative importance of tree age and climate on individual tree growth responses. Tree age was the most important factor for tree growth in models parameterised using data from all forest developmental stages. Contrastingly, the relationship found between tree age and growth became non-significant in models parameterised using data corresponding to mature stages. These results suggest that although absolute tree growth can continuously increase along tree size when trees reach maturity age had no effect on growth. Tree growth was strongly reduced under increased annual temperature, leading to more constant age-related growth responses. Furthermore, young trees were the most sensitive to reductions in relative growth rates, but absolute growth was strongly reduced under increased temperature in old trees. Our results help to reconcile previous contrasting findings of age-related growth responses at the individual tree level, suggesting that the sign and magnitude of age-related growth responses vary with stand development. The different responses found to climate for absolute and relative growth rates suggest that young trees are particularly vulnerable under warming climate, but reduced absolute growth in old trees could alter the species’ potential as a carbon sink in the future.     

Identification of the tree shrew ATP-binding cassette transporter A1 (ABCA1) and its expression in tissues

ATP-binding cassette transporter A1 (ABCA1) modulates plasma levels of high density lipoprotein (HDL), a cardiovascular protecting factor. Tree shrew was considered to be an animal protected from atherosclerosis characterized by high proportion of HDL in plasma. The cDNA clones and expression of tree shrew ABCA1 was identified using SMART-RACE and Real-Time PCR techniques respectively. The nucleotide sequence of tree shrew ABCA1 covered 7,762 bp, including a 6,786 bp coding region which encoded a 2,261 amino acids protein with the high identity to human ABCA1 (95%). Tree shrew ABCA1 was expressed in various tissues, the highest in lung, followed by liver, kidney, spleen and cardiac muscle in turn from high to medium expression levels. This pattern was partially different from that of human ABCA1 which was low in kidney and cardiac muscle. This work could shed new light on its role of ABCA1 in the distinctive HDL metabolism in tree shrew.