Multi-species monitoring of rare wetland fishes should account for imperfect detection of sampling devices

Accuracy in estimating occupancy of a threatened species is important for conservation but false absences bias many monitoring programs. Imperfect detection is especially relevant to surveys of rare wetland fishes which are often small-bodied and cryptic. Many factors influence probability of detection, including fish size and abundance, habitat characteristics and sampling devices. Imperfect detection can be addressed by accounting for probability of detection when estimating occupancy by modelling detection/non-detection data collected in replicate surveys. Three ecological specialists were once common in habitats associated with Lake Alexandrina at the terminus of the Murray–Darling Basin, Australia. The threatened Murray Hardyhead (Craterocephalus fluviatilis), Southern Pygmy Perch (Nannoperca australis) and Yarra Pygmy Perch (N. obscura) are now rare in the region following population collapses during a prolonged drought, and ongoing monitoring aims to assess their statuses for management purposes. This study compares probability of detection of the rare wetland fishes and cohabiting species during 2 years of multi-species monitoring using contrasting sampling devices (fyke and seine). The findings suggest large variations in estimated probability of detection can occur between devices for Murray Hardyhead and Southern Pygmy Perch. Yarra Pygmy Perch was undetected during the study. Overall, the findings show multi-species monitoring programs using a single sampling device may wrongly estimate the occupancy of a target fish. By accounting for imperfect detection, multi-species monitoring programs will improve inferences regarding population status, recovery and habitat quality of fishes to more accurately inform wetland management.     

Daily age determination and growth rates of freshwater fish throughout a regulated lotic system of the Murray‐Darling Basin Australia

To facilitate future research in freshwater fish recruitment response to environmental flow delivery, size‐at‐age and growth models are presented for eight fish species occurring in south‐eastern Australia; three small‐bodied species and the juvenile 0+ age classes of five large‐bodied species. Otolith increments were used to estimate the daily age of golden perch Macquaria ambigua, bony bream Nematalosa erebi, common carp Cyprinus carpio; Murray cod Maccullochella peelii, freshwater eel‐tailed catfish Tandanus tandanus, Australian smelt Retropinna semoni, un‐specked hardyhead Craterocephalus stercusmuscarum fulvus and Murray–Darling rainbowfish Melanotaenia fluviatilis. Linear growth models provided the best fit for length‐at‐age data of juvenile 0+ age large‐bodied species; whereas von Bertalanffy growth functions provided the best fit to length‐at‐age data of small‐bodied species. The results provide novel baseline data for future research in this area.     

Effects of flooding on recruitment and abundance of Golden Perch (Macquaria ambigua ambigua) in the lower River Murray

Flooding is often considered a stimulus for production of fish in floodplain rivers. In the southern Murray–Darling Basin (MDB), Australia, however, few native fish species have been shown to use the floodplain for spawning, and recruitment has been positively and negatively associated with flooding. In 2010/11, extensive flooding in the lower River Murray provided an opportunity to investigate the recruitment response of Golden Perch (Macquaria ambigua ambigua) following 10 years of drought and floodplain isolation. Annual variation in Golden Perch abundance and recruitment were investigated in anabranch and main channel habitats at Chowilla in the floodplain geomorphic region of the lower River Murray over a 7‐year period incorporating the flood and 6 years of in‐channel flow. Spatial variation in recruitment in the lower River Murray was also investigated by comparing the age structure of Golden Perch in the swamplands/lakes, gorge and floodplain geomorphic regions. Golden Perch abundance in the Chowilla region increased significantly postflooding compared with drought years. Age structures indicated that increased abundance was due predominantly to fish spawned during the flood (2010/11) and the previous year (2009/10), which was characterised by in‐channel flows. Age structure was similar in the nearby Katarapko Anabranch system indicating a uniform postflood recruitment response in the floodplain geomorphic region. Juvenile Golden Perch from the 2010/11 and 2009/10 cohorts were less apparent in the gorge and swamplands/lakes regions. Golden Perch have flexible life histories and will spawn and recruit in association with in‐channel rises in flow and overbank flows, but significant increases in abundance in the lower River Murray may result from overbank flooding. Contemporary approaches to flow restoration in the MDB emphasise overbank flows and floodplain processes. We suggest, however, that environmental flow management that incorporates floodplain and in‐channel processes, at appropriate spatio‐temporal scales, will result in more robust populations of Golden Perch.     

A Large-scale, Hierarchical Approach for Assessing Habitat Associations of Fish Assemblages in Large Dryland Rivers

Multiple-scale assessments of fish-habitat associations are limited despite the fact that riverine fish assemblages are influenced by factors operating over a range of spatial scales. A method for assessing fish-habitat assemblages at multiple scales is proposed and tested in a large Australian dryland river, the Barwon–Darling River. Six discrete mesohabitat types (large wood, smooth bank, irregular bank, matted bank, mid-channel and deep pool) nested within 10 km long river reaches were sampled. Individual reaches were, in turn, nested within four larger geomorphological zones, previously identified along the river. Fish assemblages varied significantly between mesohabitat types and at different spatial scales. Golden perch (Macquaria ambigua), Murray cod (Maccullochella peelii peelii) and common carp (Cyprinus carpio) were strongly associated with large wood, but golden perch and Murray cod exhibited higher habitat specificity than carp. Bony herring (Nematalosa erebi) were more common in shallow edgewater habitats. At the river-scale, regional differences in the fish assemblage occurred at scales closely corresponding to geomorphological zones and these differences were associated with changes in the relative abundance of species rather than the addition or replacement of species. The proposed hierarchical framework improves the efficiency of fish surveys in large rivers by viewing meso-scale fish-habitat associations in the context of larger-scale geomorphological processes.     

Effects of flooding on recruitment and dispersal of the Southern Pygmy Perch (Nannoperca australis) at a Murray River floodplain wetland

Summary With limited evidence linking Australia's Murray‐Darling Basin fish species and flooding, this study assessed annual variation in abundance and recruitment levels of a small‐bodied, threatened floodplain species, the Southern Pygmy Perch (Nannoperca australis), in floodplain habitats (creeks, lakes and wetlands) in the Barmah‐Millewa Forest, Murray River, Australia. Spring and summer sampling over a 5‐year period encompassed large hydrological variation, including 1 year of extended floodplain inundation which was largely driven by an environmental water release, and 2 years of severe regional drought. Recruitment and dispersal of Southern Pygmy Perch significantly increased during the floodplain inundation event compared with the other examined years. This study provides valuable support for an environmental water allocation benefiting a native species, and explores the link between flooding and its advantages to native fish. This suggests that the reduced flooding frequency and magnitude as a result of river regulation may well be a major contributing factor in the species’ decline in the Murray‐Darling Basin.     

Flow-induced alterations to fish assemblages, habitat and fish–habitat associations in a regulated lowland river

Understanding the cause–effect response of aquatic biota to hydrological variability is fundamental to the restoration of regulated rivers. Spatio-temporal variation in fish assemblage structure, microhabitat cover and fish–habitat associations were investigated in the main channel of the regulated lower River Murray, Australia, during a prolonged period of low within-channel flows and following a high flow event and flood. Several small-bodied species (e.g. carp gudgeon, Hypseleotris spp.), were abundant and significantly associated with submerged macrophytes during low flows, but were absent or significantly less abundant following flooding, and the loss of these microhabitats. Large-bodied riverine species that spawn in response to increases in flow (e.g. golden perch, Macquaria ambigua ambigua) or spawn and recruit in inundated floodplain habitats (e.g. common carp, Cyprinus carpio), exhibited flexible microhabitat use and were significantly more abundant following flooding. In the lower River Murray, high flow events appear integral in structuring fish assemblages, indirectly influencing the abundance of small-bodied fish by re-structuring macrophyte cover and directly influencing the abundance of large-bodied species by facilitating critical life history processes (e.g. recruitment). These results highlight species-specific differences in cause–effect responses to flow variability and have implications for managing flow in regulated rivers.     

Prioritising the rehabilitation of fish passage in a regulated river system based on fish movement

Environmental rehabilitation budgets are often limited, and management actions need to be prioritised to achieve the best outcomes. Prioritisation can best be done when evidence informs the decision‐making process. We acoustically tagged twenty Golden Perch (Macquaria ambigua) in the Loddon River, Australia, and tracked their movements to gain an understanding on the requirements for fish passage at a major regulating structure, the Box Creek regulator. The movements of these fish were monitored through a network of receivers located throughout the lower Loddon River and Pyramid Creek system. Five fish moved 50–120 km upstream, four of which reached the Box Creek regulator before moving back downstream to the entrance of the Kerang Lakes system. Most long distance upstream movements were associated with an increase in river discharge. The remaining 15 fish moved <20 km, with all fish being detected at least once. This pilot study indicates that Box Creek regulator is acting as a barrier for some fish within the Loddon River system. Movement data also indicate that Golden Perch migration pathways may be influenced by river discharge. The management implications of this work includes the need to reinstate fish passage at Box Creek regulator and the potential use of environmental flows to enhance colonisation of native fish species throughout the Murray Darling Basin.     

Habitat characteristics of juvenile cowcod, <Emphasis Type="Italic">Sebastes levis</Emphasis> (Scorpaenidae), in Southern California

We characterized habitat requirements of juvenile cowcod, Sebastes levis, using information from surveys conducted aboard the manned research submersible Delta. We conducted 303 dive surveys on rocky banks and outcrops in water depths between 28 and 365 m in southern and central California, covering 483 km (963,940 m²) of seafloor. We counted 549,263 fishes from at least 134 species; 216 individuals were juvenile cowcod, S. levis, of 45 cm or less in total length (TL). Juvenile cowcod occupied depths between 52 and 330 m and demonstrated ontogenetic shifts in their habitat associations. Small fish (5–20 cm TL) lived primarily among cobbles or cobbles and small boulders. As fish grew, they moved into high-relief rock habitats, including boulder fields and rock ridges. Small cowcods were found with pygmy, Sebastes wilsoni, and swordspine, Sebastes ensifer, rockfishes. Larger juveniles often associated with juvenile bocaccio, Sebastes paucispinis, juvenile widow rockfish, Sebastes entomelas, and squarespot rockfish, Sebastes hopkinsi. Our study resulted in a characterization of seafloor habitats on a small spatial scale that is relevant to juvenile cowcod nursery areas, which is important when considering effective management strategies for this overfished species.     

Fish and flow management in the Murray–Darling Basin: Directions for research

Effective natural resource management requires knowledge exchange between researchers and managers to support evidence‐based decision‐making. To achieve this, there is a need to align research with management and policy needs. This project aimed to identify the flow‐related ecological knowledge needs for freshwater fish to better inform environmental water management in the Murray–Darling Basin, south‐eastern Australia. Our major objective was to provide an up‐to‐date assessment of scientific research and integrate this with the knowledge requirements of relevant managers to guide future research. We reviewed the contemporary scientific literature and engaged managers specifically responsible for delivering flows for fish outcomes via a questionnaire and workshop. Research on fishes of the MDB has generally evolved from single locations and/or times to larger spatio‐temporal scales, including multiple sites, rivers and catchments. There has also been a trend from single life stage studies to incorporation of multiple life stages and population processes. There remain, however, significant deficiencies in knowledge for most native species, many of which are threatened. Four agreed key knowledge gaps were derived from the literature review and managers’ suggestions: (i) population dynamics, (ii) movement, dispersal and connectivity, (iii) survival and recruitment to adults and (iv) recruitment drivers. To inform policy and management, managers desired timely advice, based on robust research and monitoring. Fish species of most relevance to managers were those highly regarded by community stakeholders and whose life histories and population dynamics are potentially influenced by flow. Populations of these mostly large‐bodied, angling species (e.g. Murray Cod, Golden Perch and Silver Perch) have declined, often due to river regulation and, in conjunction with managers’ priorities, are relevant candidates for research to support the management of flow to rehabilitate fish populations in the MDB.     

Fish community changes after minimum flow increase: testing quantitative predictions in the Rhône River at Pierre-Bénite, France

1. Many aspects of the flow regime influence the structure of stream communities, among which the minimum discharge left in rivers has received particular attention. However, instream habitat models predicting the ecological impacts of discharge management often lack biological validation and spatial generality, particularly for large rivers with many fish species. 2. The minimum flow at Pierre‐Bénite, a reach of the Rhône river bypassed by artificial channels, was increased from 10 to 100 m³ s^?1 in August 2000 (natural mean discharge 1030 m³ s^?1), resulting in a fivefold increase in average velocity at minimum flow. Fish were electrofished in several habitat units on 12 surveys between 1995 and 2004. 3. Principal components analysis revealed a significant change in the relative abundance of fish species. The relative abundance of species preferring fast‐flowing and/or deep microhabitats increased from two‐ to fourfold after minimum flow increase. A change in community structure confirmed independent quantitative predictions of an instream habitat model. This change was significantly linked to minimum flow increase, but not to any other environmental variables describing high flows or temperature at key periods of fish life cycle. The rapidity of the fish response compared with the lifespan of individual species can be explained by a differential response of specific size classes. 4. The fish community at Pierre‐Bénite is in a transitional stage and only continued monitoring will indicate if the observed shift in community structure is perennial. We expect that our case study will be compared with other predictive tests of the impacts of flow restoration in large rivers, in the Rhône catchment and elsewhere.     

Differential responses by two closely related native fishes to restoration actions

Globally, river degradation has decimated freshwater fish populations. To help reverse this trend in a southeastern Australia river, we used multiple restoration actions, including reintroduction of instream woody habitat, riparian revegetation, removal of a weir hindering fish movement, fencing out livestock, and controlling riparian weeds. We monitored the responses of native fish at the segment scale (20 km) and reach scale (0.3 km) over 7 years to assess the effectiveness of the different restoration strategies. Two closely related species, Murray cod Maccullochella peeli and trout cod Maccullochella macquariensis, increased at the restored segment compared with the control segment. However, inherent differences between river segments and low sample size hampered assessment of the mechanisms responsible for segment‐scale changes in fish abundance. In contrast, at the reach scale, only M. peeli abundance significantly increased in reaches supplemented with wood. These differential responses by 2 closely related fish species likely reflect species‐specific responses to increased habitat availability and enhanced longitudinal connectivity when the weir improved passage around a fishway. Changes in M. peeli abundance in segments supplemented with and without wood suggest an increase in carrying capacity and not simply a redistribution of individuals within the segment, facilitated the observed expansion. Our findings confirm the need to consider individual fish species' habitat preferences carefully when designing restoration interventions. Further, species‐specific responses to restoration actions provide waterway managers with precise strategies to target fish species for recovery and the potential to predict fish outcomes based on ecological preferences.     

Nearshore fish habitat utilization and species associations in Lake Opinicon (Ontario,Canada)

Synopsis The bulk of Lake Opinicon fish biomass is concentrated in the physically diverse inshore areas. Quantitative analysis of the community compositions of the various inshore habitat types (weedy inlets, sandy shallows, rock shelf, gravel, etc.) showed that each supported a characteristic assemblage of fishes with a relatively constant species and year class composition. This was maintained throughout the season despite a drop in fish biomass in late summer when there was a progressive movement into the offshore waters.Weedbed areas supported the highest biomass, and greatest species and year class diversity. Thereafter, in declining order of richness, were rocky and sandy areas. A few fish species were restricted to single habitat types, e.g.Notropis heterodon to inshore weedbeds.Lepomis macrochirus, the commonest species in the lake was, by contrast, versatile and occurred in all inshore habitats. Commonly the numbers of a species in a habitat differed between day and night. Significant diel movements between habitats characterized two nocturnal feedersPomoxis nigromaculatus andIctalurus nebulosus.     

Approach velocity and impingement duration influences the mortality of juvenile Golden Perch (Macquaria ambigua) at a fish exclusion screen

Globally, the extraction and diversion of water from river systems has had substantial impacts on aquatic ecosystem health and ecological processes. One such impact is the entrainment of fish at pump offtakes that can result in vast quantities of fish being permanently removed from rivers. Exclusion screens to prevent fish entrainment at pump offtakes are therefore an important management consideration. In this study, impingement and subsequent injury and mortality of a juvenile freshwater perciform, Golden Perch (Macquaria ambigua), was assessed in the laboratory using a simulated fish exclusion screen under a range of velocities and impingement durations. A 2 mm wedge‐wire screen eliminated the entrainment of 44‐day‐old Golden Perch that were exposed to approach velocities between 0.05 and 0.3 m/s. However, impingement rates of Golden Perch increased significantly with increased approach velocities and rates of injury and mortality increased with impingement duration. Results from this study indicate the primary mechanisms to reduce fish loss at pump offtakes are to design pump offtakes, fitted with fish exclusion screens, which limit approach velocities or impingement duration. Further studies are required to examine a range of species with varying swimming ability at early life‐history stages. Such data will contribute to the growing body of knowledge that supports adaptive management plans to prevent fish loss at water offtake pumps.     

Restoration by biomanipulation of lake Bleiswijkse Zoom (The Netherlands): First results

In 1987, the Bleiswijkse Zoom, a small, shallow lake in The Netherlands, was divided into two compartments to investigate the possible use of biomanipulation as a tool for restoring the water quality of hypertrophic lakes. The density of the fish stock before restoration was about 650 kg.ha^–1, composed mainly of bream, white bream and carp. Pikeperch was the main fish predator in the lake. In April, 1987, in one compartment (Galgje) all planktivorous bream and white bream and about 85% of the benthivorous bream and carp were removed. Advanced pikeperch fry were introduced as predator during the transient period. The other compartment (Zeeltje) was used as a reference. Removal of the fish in Galgje resulted in low concentrations of chlorophyll-a, total phosphorus, nitrogen and suspended solids. The absence of bottom-stirring activity by benthivorous fish and the low chlorophyll-a concentrations led to an increase in the Secchi disk transparency from 20 to 110 cm. Within two months after removal of the fish, macrophytes, mainly Characeae, became abundant. Until July the high density of large zooplankton species caused low algal biomass. From June onwards, the zooplankton densities decreased, but the algal concentrations remained low. This is probably because of nutrient limitation or depression of algal growth by macrophytes or both. Compared with the non-treated compartment the number of fish species in the treated compartment was higher. Perch, rudd and roach, i.e. the species associated with aquatic vegetation, were found in the samples. The survival of the O⁺ pikeperch was poor. The pikeperch could not prevent the growth of young cyprinids. Within two months after the removal of the fish a habitat for northern pike was created.     

Have grass carp driven declines in macrophyte occurrence and diversity in the Vaal River,South Africa?

The Vaal River, South Africa, historically had a rich diversity of native submerged macrophytes with at least 13 species from 5 families recorded. Over the past 10 years there has been a noticeable reduction in the occurrence and diversity of submerged macrophytes in the river. It is possible that this is linked to the recent increase in the populations of invasive alien grass carp Ctenopharyngodon idella Cuvier & Valenciennes (Cyprinidae) in the river, where populations have been a concern since 2005. Grass carp invasions worldwide have been shown to have severe impacts on macrophyte biodiversity and ecosystem functioning. This fish is an aggressive feeder on submerged macrophytes, as well as being an ecosystem engineer that can change water and sediment chemistry.     

Reproduction, Growth, and Migration of Fishes in a Regulated Lowland Tributary: Potential Recruitment to the River Meuse

Many European rivers are characterized by a canalized main channel, steep stony embankments, the absence of aquatic vegetation, regulated flow dynamics, reduced hydrological connectivity to the floodplains and a lack of spawning and nursery areas for many fish species. In such regulated rivers, tributaries may be particularly important for recruitment of fish populations in the main channel. This paper describes the reproduction, growth and migration of fishes in the Everlose Beek, a regulated lowland tributary stream of the river Meuse (The Netherlands), using bi-weekly sampling from January to December 2002. A total of 8615 fishes were caught, belonging to 13 different species. The fish species were classified into three groups, viz., residents, migrants and transients, based on the presence of various life-stages in the tributary. Size-frequency data suggest that each group uses the Everlose Beek differently: (i) Stone loach (Barbatula barbatula), Gudgeon (Gobio gobio) and Three-spined stickleback (Gasterosteus aculeatus) were resident species using the tributary as a spawning, nursery and adult habitat; (ii) Bream (Abramis brama), Roach (Rutilus rutilus), Rudd (R. erythrophthalmus), Tench (Tinca tinca), and Pike (Esox lucius) were migratory species, using the tributary as a spawning area, as well as a nursery habitat during their first year of growth, but migrating towards the river Meuse typically at a length of 5–15 cm; and (iii) Bleak (Alburnus alburnus), Sunbleak (Leucaspius delineatus), Carp (Cyprinus carpio), Crucian carp (Carassius carassius), and Perch (Perca _,fluviatilis) were transient species, characterized by an absence of reproduction, ^.and the occurrence in very low densities of >age-1 juveniles and adults only. Lowland tributaries, such as the Everlose Beek, can contribute to the recruitment of particularly migrant species, hence contributing to fish populations of the regulated river Meuse.     

Effects of contrasting omnivorous fish on submerged macrophyte biomass in temperate lakes: a mesocosm experiment

1. Freshwater fish can affect aquatic vegetation directly by consuming macrophytes or indirectly by changing water quality. However, most fish in the temperate climate zone have an omnivorous diet. The impact of fish as aquatic herbivores in temperate climates therefore remains unclear and depends on their dietary flexibility. 2. We tested the effects of a flexible omnivore and an herbivore on aquatic vegetation by comparing the effects of rudd (Scardinius erythrophthalmus, the most herbivorous fish in temperate climates) with grass carp (Ctenopharyngodon idella) in a mesocosm pond study. Exclosures distinguished herbivorous effects of fish on submerged macrophytes from indirect effects through changes in water quality, whereas stable isotope food‐web analysis provided information on fish diets. 3. We hypothesised that rudd, with its flexible diet and preference for animal food items, would only indirectly affect macrophytes, whereas grass carp, with its inflexible herbivorous diet, would directly affect macrophyte biomass. 4. Only grass carp significantly reduced macrophyte biomass through consumption. Rudd had no effect. Food‐web analysis indicated that rudd predominantly consumed animal prey, whereas grass carp included more plants in their diet, although they also consumed animal prey. Grass carp significantly affected water quality, resulting in lowered pH and increased N‐NH₄ concentrations, whereas more periphyton growth was observed in the presence of rudd. However, the indirect non‐herbivorous effects of both fish species had no effect on macrophyte biomass. 5. Both fish species should be considered as omnivores. Despite the fact that rudd is the most herbivorous fish in the western European climate zone, its effect on submerged macrophyte biomass is not substantial at natural densities and current temperatures.     

Effects of Habitat Connectivity on the Abundance and Species Richness of Coral Reef Fishes: Comparison of an Experimental Habitat Established at a Rocky Reef Flat and at a Sandy Sea Bottom

Coral reef fish assemblages are widely recognized for the coexistence of numerous species, which are likely governed by both coral diversity and substratum complexity. However, since coral reefs provide diverse habitats due to their physical structure and different spatial arrangements of coral, findings obtained from an isolated habitat cannot necessarily be applied to fish assemblages in other habitats (e.g. continuous habitats). The aim of this study, therefore, was to determine by a field experiment whether habitat connectivity (spatial arrangement of coral colonies) affects abundance and species richness of fishes in an Okinawan coral reef. The experiment consisted of transplanted branching coral colonies at a 4m×8m quadrat at both a rocky reef flat and sandy sea bottom. Generally, the abundance of fishes was greater at the sandy sea bottom, especially for three species of pomacentrids, one species of labrids, one species of chaetodontids and two species of apogonids. Species–area curves showed that the species richness of fishes was significantly greater in the quadrat at the sandy sea bottom at 3, 6 and 9 months after the start of the experiment. The rate of increase in abundance of fishes per area was significantly greater in the quadrat at the sandy sea bottom over the study period. The results of rarefaction analyses showed that the rate of increase in species richness per abundance was significantly higher in the quadrat at the sandy sea bottom in the juvenile settlement period, indicating that the magnitude of dominance by particular species was greater at the sandy sea bottom habitat. Our findings suggest that habitat connectivity affects the abundance and species richness of coral reef fishes, i.e. the isolated habitat was significantly more attractive for fishes than was the continuous habitat. Our findings also suggest that the main ecological factors responsible for organization of fish assemblage at a continuous habitat and at an isolated habitat are different.     

Fish community structure response to major habitat changes within the littoral zone of an estuarine coastal lake

Synopsis The littoral environment and fish fauna of Swartvlei, an estuarine lake, was monitored for four years during which major habitat changes occurred. Initially (1979) the zone was dominated by the submerged macrophytes Potamogeton pectinatus, Chara globularis and Lamprothamnium papulosum. This plant community was replaced by filamentous algal mats during 1980 and with the disappearance of these mats in 1981 the littoral zone was transformed into a sandy habitat. There was a highly significant decline in the numbers of fishes in the littoral zone between the macrophyte and sand phases but no significant decrease in fish biomass between the two phases. Analysis of gill net catches revealed an increase in the CPUE of the family Mugilidae between the macrophyte and sand phases but a decline in the CPUE of vegetation associated species such as Monodactylus falciformis and Rhabdosargus holubi over the same period. The increase in mullet stocks during the sand phase was attributed to epipsammic micro-algal production and the input of allochthonous detritus during the 1981 floods. The three fish species diversity indices used in this study showed minor fluctuations between the habitat phases and these variations were related to changes in the equitability of distribution between the individual species within each habitat type. The numbers of fish species recorded during the macrophyte, algal mat and sand phases varied by less than 20%. The resilience of estuarine fishes to major alterations in their environment was illustrated by the fact that all fish species recorded at the beginning of 1979 were present at the end of 1982, despite major habitat and food resource changes.     

High‐resolution riparian vegetation mapping to prioritize conservation and restoration in an impaired desert river

In highly impaired watersheds, it is critical to identify both areas with desirable habitat as conservation zones and impaired areas with the highest likelihood of improvement as restoration zones. We present how detailed riparian vegetation mapping can be used to prioritize conservation and restoration sites within a riparian and instream habitat restoration program targeting 3 native fish species on the San Rafael River, a desert river in southeastern Utah, United States. We classified vegetation using a combination of object‐based image analysis (OBIA) on high‐resolution (0.5 m), multispectral, satellite imagery with oblique aerial photography and field‐based data collection. The OBIA approach is objective, repeatable, and applicable to large areas. The overall accuracy of the classification was 80% (Cohen's κ = 0.77). We used this high‐resolution vegetation classification alongside existing data on habitat condition and aquatic species' distributions to identify reaches' conservation value and restoration potential to guide management actions. Specifically, cottonwood (Populus fremontii) and tamarisk (Tamarix ramosissima) density layers helped to establish broad restoration and conservation reach classes. The high‐resolution vegetation mapping precisely identified individual cottonwood trees and tamarisk thickets, which were used to determine specific locations for restoration activities such as beaver dam analogue structures in cottonwood restoration areas, or strategic tamarisk removal in high‐density tamarisk sites. The site prioritization method presented here is effective for planning large‐scale river restoration and is transferable to other desert river systems elsewhere in the world.