植物过氧化物酶体在活性氧信号网络中的作用北大核心CSCD

过氧化物酶体是高度动态、代谢活跃的细胞器,主要参与脂肪酸等脂质的代谢及产生和清除不同的活性氧(reactive oxygen species,ROS)。ROS是细胞有氧代谢的副产物。当胁迫长期作用于植物,过量的ROS会引起氧胁迫,损害细胞结构和功能的完整性,导致细胞代谢减缓,活性降低,甚至死亡;但低浓度的ROS则作为分子信号,感应细胞ROS/氧化还原变化,从而触发由环境因素导致的过氧化物酶体动力学以及依赖ROS信号网络改变而产生快速、特异性的应答。ROS也可以通过直接或间接调节细胞生长来控制植物的发育,是植物发育的重要调节剂。此外,过氧化物酶体的动态平衡由ROS、过氧化物酶体蛋白酶及自噬过程调节,对于维持细胞的氧化还原平衡至关重要。本文就过氧化物酶体中ROS的产生和抗氧化剂的调控机制进行综述,以期为过氧化物酶体如何感知环境变化,以及在细胞应答中,ROS作为重要信号分子的研究提供参考。     

植物过氧化物酶体在活性氧信号网络中的作用

过氧化物酶体是高度动态、代谢活跃的细胞器,主要参与脂肪酸等脂质的代谢及产生和清除不同的活性氧(reactive oxygen species, ROS)。ROS是细胞有氧代谢的副产物。当胁迫长期作用于植物,过量的ROS会引起氧胁迫,损害细胞结构和功能的完整性,导致细胞代谢减缓,活性降低,甚至死亡;但低浓度的ROS则作为分子信号,感应细胞ROS/氧化还原变化,从而触发由环境因素导致的过氧化物酶体动力学以及依赖ROS信号网络改变而产生快速、特异性的应答。ROS也可以通过直接或间接调节细胞生长来控制植物的发育,是植物发育的重要调节剂。此外,过氧化物酶体的动态平衡由ROS、过氧化物酶体蛋白酶及自噬过程调节,对于维持细胞的氧化还原平衡至关重要。本文就过氧化物酶体中ROS的产生和抗氧化剂的调控机制进行综述,以期为过氧化物酶体如何感知环境变化,以及在细胞应答中,ROS作为重要信号分子的研究提供参考。     

Bodipy-C12在癌细胞过氧化物酶体中富集

目的:研究并比较Bodipy标记的月桂酸(Bodipy-C12)在癌细胞与正常细胞中的亚细胞定位。方法:在多种癌细胞和正常细胞的培养基中加入Bodipy-C12(1μg/m L),利用共聚焦显微镜活细胞定时间隔拍摄,结合不同细胞器的分子标记蛋白,观察Bodipy-C12五分钟内在不同细胞器中的定位。结果:在人肝癌细胞系HepG2细胞中,Bodpy-C12信号不仅仅存在于线粒体和脂滴,同时富集于过氧化物酶体中。我们分别采用Pex3-GFP、Pex14-GFP、GFP-Pex16、GFP-SKL和GFP-Pmp34等特异性定位的过氧化物酶体蛋白,确认Bodpy-C12信号富集于过氧化物酶体。此外,过氧化物酶体中Bodpy-C12信号的富集发生在更多的癌细胞系中,例如结肠癌细胞HCT116和乳腺癌细胞MCF7。不同的是,在正常细胞系如3T3-L1,NRK和COS7中,Bodipy-C12信号存在于线粒体和脂滴中,但未在过氧化物酶体中检测到。结论:Bodipy-C12信号存在于正常细胞和癌细胞的脂滴和线粒体中,且其在癌细胞过氧化物酶体中富集,而不存在于正常细胞的过氧化物酶体中,预示癌细胞中过氧化物酶体脂代谢的差异。     

细胞中蛋白质的合成和转运（二）

（上接第５期第６页）３　细胞质基质中合成的蛋白质及其转运在细胞质基质中合成的蛋白质,有些仍留在基质中发挥作用,有些则转运到细胞器,如过氧物酶体、线粒体、叶绿体,或者细胞核中。３－１　过氧物酶体蛋白的转运过氧物酶体中所有的酶,以及所有的膜蛋白,都由细胞核基因编码,并在细胞质基质中合成,然后转运到过氧化物酶体中的。对这一过程了解较多的是过氧化氢酶,它是一个含血红素的四聚体蛋白,其单体在细胞质基质中合成,在某种信号序列（导肽）的指导下进入过氧物酶体,这一信号序列并不被切除。目前发现至少部分信号序列与过…     

噬菌体展示肽库在细胞信号转导研究中的应用

细胞信号转导是一个由信号分子相互作用介导的生物信息传递的过程 ,蛋白质之间以及蛋白质与其他分子间的相互作用是信号转导的基础。近年来 ,利用噬菌体展示肽库技术研究细胞信号转导 ,取得了很多有意义的结果。1.鉴定信号蛋白识别结合位点信号蛋白之间特异性的识别结合主要通过一小段保守区实现 ,如ＳＨ2区 (Ｓｒｃ ｈｏｍｏｌｏｇｙｄｏｍａｉｎ)、ＳＨ3区、ＰＴＢ区 (ｐｈｏｓｐｈｏｔｙｒｏｓｉｎｅ ｂｉｎｄｉｎｇｄｏｍａｉｎ)等。用噬菌体展示肽库技术可以快速获得与这些保守区结合的配体的结构信息。用Ｓｒｃ酪氨酸激酶的ＳＨ3区筛…     

TassC结合过氧化物酶体对早期受染巨噬细胞内的鼠伤寒沙门菌的影响

探讨鼠伤寒沙门菌在感染鼠巨噬细胞早期与细胞器的相互作用。用pTassC-GFP质粒转染鼠巨噬细胞RAW264.7,结合多抗的溶酶体标志物溶酶体相关膜蛋白-1用键合了Alexa594的羊抗鼠二抗显色,以观察标记了绿色荧光蛋白的TassC与溶酶体的关系;用pTassC-GFP和pDsRed2-Perxi质粒共转染RAW264.7细胞,以观察TassC-GFP与过氧化物酶体的关系;用SYTO42标记鼠伤寒沙门菌,感染用pTassC-GFP和pDsRed2-Perxi质粒共转染的RAW264.7细胞,以观察细菌与TassC和过氧化物酶体的关系。免疫荧光显示TassC-GFP不与鼠巨噬细胞RAW264.7中的溶酶体结合,但与标记了红色荧光的过氧化物酶体共定位;感染1 h的RAW264.7胞内SYTO42标记的鼠伤寒沙门菌吞噬泡可招募TassC-GFP和过氧化物酶体。这些发现提示在鼠伤寒沙门菌感染早期过氧化物酶体携带杀菌成分通过TassC介导可参与发挥一定的杀菌作用。     

脂肪内源性硫化氢-功能、调节与疾病

硫化氢是新的气体信号分子,在多种疾病中有重要的保护作用。脂肪组织表达胱硫醚β合酶、胱硫醚γ裂解酶以及β-巯基丙酮酸转硫酶并产生释放硫化氢。脂肪组织内源性硫化氢可调节脂肪糖摄取和利用、脂肪分解、脂肪细胞分化以及脂肪内分泌,从而参与肥胖、糖尿病以及心血管疾病的调节。硫化氢可激活胰岛素受体信号、激活过氧化物增殖体活化受体γ、调控钾离子通道参与调节过程。硫化氢可能作为能量代谢的"开关",参与代谢性疾病的调节。     

酵母过氧化物酶体的形成机制

过氧化物酶体是细胞中一种重要的细胞器。过氧化物酶体在细胞功能的发挥和人体健康方面有着重要作用。目前,以酵母过氧化物酶体为模型,研究过氧化物酶体的形成机制是研究热点。从过氧化物酶体起源、生成方式介绍最新研究进展,总结在酵母细胞中参与过氧化物酶体形成的必需基因(pex),及其编码Peroxin蛋白在过氧化物酶体形成过程中的作用,阐述酵母过氧化物酶体的形成途径和形成机制,展望了研究前景。     

溶酶体与过氧化物酶体形成膜接触介导胆固醇转运

胆固醇是真核细胞中含量非常丰富的一类脂质小分子,其主要生物学功能是掺入到磷脂双分子层中,调节膜的性质。胆固醇在细胞内不同膜上的分布极不均匀而且高度动态运输,这对维持细胞的正常生命活动至关重要。然而,细胞内胆固醇运输的机制一直不清楚。针对这一胆固醇代谢领域的重要问题,同时也是一个基本的细胞生物学问题,通过巧妙设计、全基因组筛选,鉴定出341个参与细胞内胆固醇转运的候选基因,其中,过氧化物酶体相关基因被显著富集。进而发现溶酶体通过和过氧化物酶体相互接触,将胆固醇转移给后者。而介导该接触的分子分别是溶酶体上的Synaptotagmin VII(Syt7)和过氧化物酶体膜上的PI(4,5)P2磷脂。将这种新发现的溶酶体–过氧化物酶体膜接触命名为LPMC(lysosome-peroxisome membrane contacts)。过氧化物酶体功能缺失会导致一大类相关疾病—过氧化物酶体紊乱疾病,表现为发育和神经系统功能障碍,目前还没有有效的治疗手段。该工作第一次揭示在这些病人和小鼠模型的细胞中有大量胆固醇堆积,且该现象的出现大大早于神经症状,提示胆固醇堆积是过氧化物酶体紊乱疾病的发病原因之一。这项研究工作的意义在于:(1)发现了细胞内胆固醇运输的新途径;(2)揭示了过氧化物酶体这一细胞器的新功能;(3)证明胆固醇运输异常是导致过氧化物酶体紊乱疾病的病因之一,为治疗该类疾病提供了全新的思路。     

BCR信号转导研究进展

Ｂ细胞表面抗原受体（ＢＣＲ）与其抗原或其它配体（如ａｎｔｉ－μＭｃＡｂ）的结合启动了Ｂ细胞的活化,ＢＣＲ交联后,首先在其ＩＴＡＭ序列部位发生酪氨酸磷酸化,从而富集并激活Ｓｒｃ家族蛋白质酪氨酸激酶（ＰＴＫ）,进而Ｓｒｃ家族ＰＴＫ将ＳｙｋＰＴＫ等的酪氨酸磷化而活化,使信号传递下去,在此过程中,还有ＦｏｒγＲⅡｂ和ＣＤ２２等分子通过富集蛋白质酪氨酸磷酸酶ＰＴＰＩＣ活化信号进行负调控,本文就此ＢＣＲ信号转     

Specification of the peroxisome targeting signals type 1 and type 2 of plant peroxisomes by bioinformatics analyses

To specify the C-terminal peroxisome targeting signal type 1 (PTS1) and the N-terminal PTS2 for higher plants, a maximum number of plant cDNAs and expressed sequence tags that are homologous to PTS1- and PTS2-targeted plant proteins was retrieved from the public databases and the primary structure of their targeting domains was analyzed for conserved properties. According to their high overall frequency in the homologs and their widespread occurence in different orthologous groups, nine major PTS1 tripeptides ([SA][RK][LM]> without AKM> plus SRI> and PRL>) and two major PTS2 nonapeptides (R[LI]x5HL) were defined that are considered good indicators for peroxisomal localization if present in unknown proteins. A lower but significant number of homologs contained 1 of 11 minor PTS1 tripeptides or of 9 minor PTS2 nonapeptides, many of which have not been identified before in plant peroxisomal proteins. The region adjacent to the PTS peptides was characterized by specific conserved properties as well, such as a pronounced incidence of basic and Pro residues and a high positive net charge, which probably play an auxiliary role in peroxisomal targeting. By contrast, several peptides with assumed peroxisomal targeting properties were not found in any of the 550 homologs and hence play--if at all--only a minor role in peroxisomal targeting. Based on the definition of these major and minor PTS and on the recognition of additional conserved properties, the accuracy of predicting peroxisomal proteins can be raised and plant genomes can be screened for novel proteins of peroxisomes more successfully.     

In silicio search for genes encoding peroxisomal proteins in Saccharomyces cerevisiae

The biogenesis of peroxisomes involves the synthesis of new proteins that after, completion of translation, are targeted to the organelle by virtue of peroxisomal targeting signals (PTS). Two types of PTSs have been well characterized for import of matrix proteins (PTS1 and PTS2). Induction of the genes encoding these matrix proteins takes place in oleate-containing medium and is mediated via an oleate response element (ORE) present in the region preceding these genes. The authors have searched the yeast genome for OREs preceding open reading frames (ORFs), and for ORFs that contain either a PTS1 or PTS2. Of the ORFs containing an ORE, as well as either a PTS1 or a PTS2, many were known to encode bona fide peroxisomal matrix proteins. In addition, candidate genes were identified as encoding putative new peroxisomal proteins. For one case, subcellular location studies validated the in silicio prediction. This gene encodes a new peroxisomal thioesterase.     

Identification of Pex13p a peroxisomal membrane receptor for the PTS1 recognition factor

We have identified an S. cerevisiae integral peroxisomal membrane protein of M of 42,705 (Pex13p) that is a component of the peroxisomal protein import apparatus. Pex13p's most striking feature is an src homology 3 (SH3) domain that interacts directly with yeast Pex5p (former Pas10p), the recognition factor for the COOH-terminal tripeptide signal sequence (PTS1), but not with Pex7p (former Pas7p), the recognition factor for the NH2-terminal nonapeptide signal (PTS2) of peroxisomal matrix proteins. Hence, Pex13p serves as peroxisomal membrane receptor for at least one of the two peroxisomal signal recognition factors. Cells deficient in Pex13p are unable to import peroxisomal matrix proteins containing PTS1 and, surprisingly, also those containing PTS2. Pex13p deficient cells retain membranes containing the peroxisomal membrane protein Pex11p (former Pmp27p), consistent with the existence of independent pathways for the integration of peroxisomal membrane proteins and for the translocation of peroxisomal matrix proteins.     

Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids

Peroxisomes play an important role in beta-oxidation of fatty acids. All peroxisomal matrix proteins are synthesized in the cytosol and post-translationally sorted to the organelle. Two distinct peroxisomal signal targeting sequences (PTSs), the C-terminal PTS1 and the N-terminal PTS2, have been defined. Import of precursor PTS2 proteins into the peroxisomes is accompanied by a proteolytic removal of the N-terminal targeting sequence. Although the PTS1 signal is preserved upon translocation, many PTS1 proteins undergo a highly selective and limited cleavage. Here, we demonstrate that Tysnd1, a previously uncharacterized protein, is responsible both for the removal of the leader peptide from PTS2 proteins and for the specific processing of PTS1 proteins. All of the identified Tysnd1 substrates catalyze peroxisomal beta-oxidation. Tysnd1 itself undergoes processing through the removal of the presumably inhibitory N-terminal fragment. Tysnd1 expression is induced by the proliferator-activated receptor alpha agonist bezafibrate, along with the increase in its substrates. A model is proposed where the Tysnd1-mediated processing of the peroxisomal enzymes promotes their assembly into a supramolecular complex to enhance the rate of beta-oxidation.     

Import of the peroxisomal targeting signal type 2 protein 3-ketoacyl-coenzyme a thiolase into glyoxysomes

Most peroxisomal matrix proteins possess a carboxy-terminal tripeptide targeting signal, termed peroxisomal targeting signal type 1 (PTS1), and follow a relatively well-characterized pathway of import into the organelle. The peroxisomal targeting signal type 2 (PTS2) pathway of peroxisomal matrix protein import is less well understood. In this study, we investigated the mechanisms of PTS2 protein binding and import using an optimized in vitro assay to reconstitute the transport events. The import of the PTS2 protein thiolase differed from PTS1 protein import in several ways. Thiolase import was slower than typical PTS1 protein import. Competition experiments with both PTS1 and PTS2 proteins revealed that PTS2 protein import was inhibited by addition of excess PTS2 protein, but it was enhanced by the addition of PTS1 proteins. Mature thiolase alone, lacking the PTS2 signal, was not imported into peroxisomes, confirming that the PTS2 signal is necessary for thiolase import. In competition experiments, mature thiolase did not affect the import of a PTS1 protein, but it did decrease the amount of radiolabeled full-length thiolase that was imported. This is consistent with a mechanism by which the mature protein competes with the full-length thiolase during assembly of an import complex at the surface of the membrane. Finally, the addition of zinc to PTS2 protein imports increased the level of thiolase bound and imported into the organelles.     

Structural requirements for interaction of peroxisomal targeting signal 2 and its receptor PEX7

The import of a subset of peroxisomal matrix proteins is mediated by the peroxisomal targeting signal 2 (PTS2). The results of our sequence and physical property analysis of known PTS2 signals and of a mutational study of the least characterized amino acids of a canonical PTS2 motif indicate that PTS2 forms an amphipathic helix accumulating all conserved residues on one side. Three-dimensional structural modeling of the PTS2 receptor PEX7 reveals a groove with an evolutionarily conserved charge distribution complementary to PTS2 signals. Mammalian two-hybrid assays and cross-complementation of a mutation in PTS2 by a compensatory mutation in PEX7 confirm the interaction site. An unstructured linker region separates the PTS2 signal from the core protein. This additional information on PTS2 signals was used to generate a PTS2 prediction algorithm that enabled us to identify novel PTS2 signals within human proteins and to describe KChIP4 as a novel peroxisomal protein.     

PTS1-independent sorting of peroxisomal matrix proteins by Pex5p

Most peroxisomal matrix proteins contain a peroxisomal targeting signal 1 (PTS1) for sorting to the correct organelle. This signal is located at the extreme C-terminus and generally consists of only three amino acids. The PTS1 is recognized by the receptor protein Pex5p. Several examples have been reported of peroxisomal matrix proteins that are sorted to peroxisomes via Pex5p, but lack a typical PTS1 tripeptide. In this contribution we present an overview of these so-called non-PTS1 proteins and discuss the current knowledge of the molecular mechanisms involved in their sorting.     

The Arabidopsis peroxisomal targeting signal type 2 receptor PEX7 is necessary for peroxisome function and dependent on PEX5

Plant peroxisomal proteins catalyze key metabolic reactions. Several peroxisome biogenesis PEROXIN (PEX) genes encode proteins acting in the import of targeted proteins necessary for these processes into the peroxisomal matrix. Most peroxisomal matrix proteins bear characterized Peroxisomal Targeting Signals (PTS1 or PTS2), which are bound by the receptors PEX5 or PEX7, respectively, for import into peroxisomes. Here we describe the isolation and characterization of an Arabidopsis peroxin mutant, pex7-1, which displays peroxisome-defective phenotypes including reduced PTS2 protein import. We also demonstrate that the pex5-1 PTS1 receptor mutant, which contains a lesion in a domain conserved among PEX7-binding proteins from various organisms, is defective not in PTS1 protein import, but rather in PTS2 protein import. Combining these mutations in a pex7-1 pex5-1 double mutant abolishes detectable PTS2 protein import and yields seedlings that are entirely sucrose-dependent for establishment, suggesting a severe block in peroxisomal fatty acid beta-oxidation. Adult pex7-1 pex5-1 plants have reduced stature and bear abnormally shaped seeds, few of which are viable. The pex7-1 pex5-1 seedlings that germinate have dramatically fewer lateral roots and often display fused cotyledons, phenotypes associated with reduced auxin response. Thus PTS2-directed peroxisomal import is necessary for normal embryonic development, seedling establishment, and vegetative growth.     

Pex12p of Saccharomyces cerevisiae is a component of a multi-protein complex essential for peroxisomal matrix protein import

We have isolated the Saccharomyces cerevisiae pex12-1 mutant from a screen to identify mutants defective in peroxisome biogenesis. The pex12delta deletion strain fails to import peroxisomal matrix proteins through both the PTS1 and PTS2 pathway. The PEX12 gene was cloned by functional complementation of the pex12-1 mutant strain and encodes a polypeptide of 399 amino acids. ScPex12p is orthologous to Pex12 proteins from other species and like its orthologues, S. cerevisiae Pex12p contains a degenerate RING finger domain of the C3HC4 type in its essential carboxy-terminus. Localization studies demonstrate that Pex12p is an integral peroxisomal membrane protein, with its NH2-terminus facing the peroxisomal lumen and with its COOH-terminus facing the cytosol. Pex12p-deficient cells retain particular structures that contain peroxisomal membrane proteins consistent with the existence of peroxisomal membrane remnants ("ghosts") in pex12A null mutant cells. This finding indicates that pex12delta cells are not impaired in peroxisomal membrane biogenesis. In immunoisolation experiments Pex12p was co-purified with the RING finger protein Pex10p, the PTS1 receptor Pex5p and the docking proteins for the PTS1 and the PTS2 receptor at the peroxisomal membrane, Pex13p and Pex14p. Furthermore, two-hybrid experiments suggest that the two RING finger domains are sufficient for the Pex10p-Pex12p interaction. Our results suggest that Pex12p is a component of the peroxisomal translocation machinery for matrix proteins.     

Pex13p is an SH3 protein of the peroxisome membrane and a docking factor for the predominantly cytoplasmic PTs1 receptor

Import of newly synthesized PTS1 proteins into the peroxisome requires the PTS1 receptor (Pex5p), a predominantly cytoplasmic protein that cycles between the cytoplasm and peroxisome. We have identified Pex13p, a novel integral peroxisomal membrane from both yeast and humans that binds the PTS1 receptor via a cytoplasmically oriented SH3 domain. Although only a small amount of Pex5p is bound to peroxisomes at steady state (< 5%), loss of Pex13p further reduces the amount of peroxisome- associated Pex5p by approximately 40-fold. Furthermore, loss of Pex13p eliminates import of peroxisomal matrix proteins that contain either the type-1 or type-2 peroxisomal targeting signal but does not affect targeting and insertion of integral peroxisomal membrane proteins. We conclude that Pex13p functions as a docking factor for the predominantly cytoplasmic PTS1 receptor.