Hematological stress indices reveal no effect of radio‐transmitters on wintering Hermit Thrushes

ABSTRACT Radio‐telemetry is often used to track birds, and several investigators have examined the possible effects of radio‐transmitters on birds. One approach to this question is to determine if transmitters induce physiological stress. Using hematological indicators of stress (heterophil‐lymphocyte [H/L] ratios), studies of captive birds have revealed no evidence that radio‐transmitters cause stress. However, studies in captivity may not reflect conditions faced by birds in the wild, especially during energetically demanding times, such as the overwintering period. We examined the possible effect of backpack‐style transmitters on overwintering Hermit Thrushes (Catharus guttatus) in South Carolina by examining H/L ratios from blood smears made before and after transmitter attachment. We captured and recaptured eight thrushes in an early winter period and 11 in a late winter period, and in both cases found that H/L ratios did not change after 1 mo of carrying transmitters. H/L ratios also did not differ significantly (in either trial) between thrushes with and without transmitters. Furthermore, thrushes that carried transmitters during both of our trials did not have higher final H/L ratios than those that carried transmitters during just one trial (the late winter). These results indicate that carrying backpack‐style transmitters for 1 mo did not induce stress in overwintering Hermit Thrushes. These results are consistent with studies of captive birds, and provide support for the continued use of backpack radio‐transmitters in this species, as long as weight recommendations are met.     

Radio‐transmitters have no impact on survival of pre‐fledged American Woodcocks

American Woodcocks (Scolopax minor) are a high priority species of conservation need across most of their breeding range due to long‐term population declines. Survival of juveniles may be key to understanding these population declines, but there have been few direct estimates of juvenile woodcock survival rates, and no recent assessment of the possible effect of radio‐tagging on juvenile survival. In 2011 and 2012, we radio‐tagged 73 juvenile American Woodcocks in west‐central Minnesota and compared survival rates of radio‐tagged (N = 58) and non‐radio‐tagged (N = 82) juveniles during the period from hatching to fledging. We compared survival rates of juveniles with known fates and used logistic‐exposure models to assess the potential impact of radio‐transmitters on survival. We evaluated variables related to juvenile survival including age, hatch date, maximum and minimum temperature, precipitation, and year to assess the possible effects of radio‐transmitters. The best‐supported model of survival rate of juvenile American Woodcocks included the interaction of age and year and a negative effect of precipitation (β = ?0.76, 85% CI: ?1.08 to ?0.43), but did not include a negative effect of transmitters. Our results suggest that radio‐transmitters did not impact survival of juvenile American Woodcocks and that transmitters are a reliable tool for studying survival of juvenile American Woodcocks, and perhaps other precocial shorebirds.     

Soil microbiome responses to the short‐term effects of Amazonian deforestation

Slash‐and‐burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked to soil acidity and raised soil pH, base saturation and exchangeable bases. Concomitant to expected changes in soil chemical factors, we observed an increase in the alpha diversity of the bacterial microbiota and relative abundances of putative copiotrophic bacteria such as Actinomycetales and a decrease in the relative abundances of bacterial taxa such as Chlamydiae, Planctomycetes and Verrucomicrobia in the deforested soils. We did not observe an increase in genes related to microbial nutrient metabolism in deforested soils. However, we did observe changes in community functions such as increases in DNA repair, protein processing, modification, degradation and folding functions, and these functions might reflect adaptation to changes in soil characteristics due to forest clear‐cutting and burning. In addition, there were changes in the composition of the bacterial groups associated with metabolism‐related functions. Co‐occurrence microbial network analysis identified distinct phylogenetic patterns for forest and deforested soils and suggested relationships between Planctomycetes and aluminium content, and Actinobacteria and nitrogen sources in Amazon soils. The results support taxonomic and functional adaptations in the soil bacterial community following deforestation. We hypothesize that these microbial adaptations may serve as a buffer to drastic changes in soil fertility after slash‐and‐burning deforestation in the Amazon region.     

Evaluating risks associated with capture and handling of mule deer for individual-based,long-term research

Capture and handling techniques for individual-based, long-term research that tracks the life history of animals by recapturing the same individuals for several years has vastly improved study inferences and our understanding of animal ecology. Yet there are corresponding risks to study animals associated with physical trauma or capture myopathy that can occur during or following capture events. Rarely has empirical evidence existed to guide decisions associated with understanding the magnitude of capture-related risks, how to reduce these risks when possible, and implications for mortality censoring and survival estimates. We used data collected from 2,399 capture events of mule deer (Odocoileus hemionus) via helicopter net-gunning to compare daily survival probabilities within a 10-week period centered on a capture event and evaluated how animal age, nutritional condition (body fat), and various handling methods influenced survival before, during, and following a capture event. Direct mortality resulting from capture efforts was 1.59%. Mean daily survival was 0.9993 ± 0.0001 (SE) during the 5-week pre-capture window, was depressed the day of capture at 0.9841 ± 0.0004, and rebounded to 0.9990 ± 0.0008 during the 5-week post-capture window. Neither capture nor handling had a detectable effect on post-capture survival, including handling time ($\overline{x}$ = 13.30 ± 1.87 min), capture time of year (i.e., Dec or Mar), tooth extraction, and the number of times an animal had been recaptured (2–17 times). Although mortality rate was slightly elevated during capture (resulting from physical trauma associated with capture), age and nutritional condition did not influence the probability of mortality during a capture event. Following a capture event, nutritional condition influenced survival; however, that relationship was consistent with expected effects of nutritional condition on winter survival and independent of capture and handling. Overall survival rates 5 weeks before capture and 5 weeks after capture were not different. A specified window of time with depressed survival following capture and handling was not evident, which contradicts the implementation of a predetermined window often used by researchers and managers for censoring mortalities that occur after capture. Previous notions that censorship of all mortality data in the 2 weeks following capture is unwarranted and risks removal of meaningful data. With previous evidence guiding our protocols for capture (e.g., reduced chase time) and handling (e.g., temperature mitigation), low direct mortality and almost undetectable indirect mortality post capture reinforces the efficacy of helicopter net-gunning for capture and recapture of mule deer in long-term, individual-based studies.     

Cooperative breeding shapes post‐fledging survival in an Afrotropical forest bird

For avian group living to be evolutionary stable, multiple fitness benefits are expected. Yet, the difficulty of tracking fledglings, and thus estimating their survival rates, limits our knowledge on how such benefits may manifest postfledging. We radio‐tagged breeding females of the Afrotropical cooperatively breeding Placid greenbul (Phyllastrephus placidus) during nesting. Tracking these females after fledging permitted us to locate juvenile birds, their parents, and any helpers present and to build individual fledgling resighting datasets without incurring mortality costs or causing premature fledging due to handling or transmitter effects. A Bayesian framework was used to infer age‐specific mortality rates in relation to group size, fledging date, maternal condition, and nestling condition. Postfledging survival was positively related to group size, with fledglings raised in groups with four helpers showing nearly 30% higher survival until independence compared with pair‐only offspring, independent of fledging date, maternal condition or nestling condition. Our results demonstrate the importance of studying the early dependency period just after fledging when assessing presumed benefits of cooperative breeding. While studying small, mobile organisms after they leave the nest remains highly challenging, we argue that the telemetric approach proposed here may be a broadly applicable method to obtain unbiased estimates of postfledging survival.     

Estimation and identification issues in the promotion time cure model when the same covariates influence long‐ and short‐term survival

The promotion time cure model is a survival model acknowledging that an unidentified proportion of subjects will never experience the event of interest whatever the duration of the follow‐up. We focus our interest on the challenges raised by the strong posterior correlation between some of the regression parameters when the same covariates influence long‐ and short‐term survival. Then, the regression parameters of shared covariates are strongly correlated with, in addition, identification issues when the maximum follow‐up duration is insufficiently long to identify the cured fraction. We investigate how, despite this, plausible values for these parameters can be obtained in a computationally efficient way. The theoretical properties of our strategy will be investigated by simulation and illustrated on clinical data. Practical recommendations will also be made for the analysis of survival data known to include an unidentified cured fraction.     

Habitat use and movement patterns by dependent and independent juvenile Grasshopper Sparrows during the post‐fledging period

The post‐fledging period is a critical life stage for young grassland birds. Habitat selection by recently fledged birds may differ from that of adults and may change as juveniles transition from the care and protection of parents to independence. To describe patterns of habitat selection during these important life stages, we studied habitat use by juvenile Grasshopper Sparrows (Ammodramus savannarum) in a Conservation Reserve Program grassland in Maryland. We used radio‐telemetry to track daily movement patterns of two age classes of Grasshopper Sparrows during the post‐fledging period. Sparrows were classified as either dependent (<32‐d‐old) or independent (≥32‐d‐old). We characterized the vegetation at 780 vegetation plots (390 plots where birds were located and 390 paired random plots). Microhabitats where dependent birds were found had significantly more bare ground, litter, and plant species richness than paired random plots. In addition, dependent birds were found in plots with less bare ground, more warm‐season grass cover, more total vegetation cover, and more forb cover than plots used by independent birds. Plots where independent birds were located also had significantly more bare ground than random plots. Dependent birds are less able to escape from predators because their flight feathers are not fully grown so they may benefit from remaining in areas of greater vegetation cover. However, juveniles transitioning from dependence to independence must forage on their own, possibly explaining their increased use of more open areas where foraging may be easier. To properly manage habitat for grassland birds, management strategies must consider the changing needs of birds during different stages of development. Our results highlight the importance of diverse grassland ecosystems for juvenile grassland birds during the transition to independence.     

Detection range of songbirds using a stopover site by automated radio‐telemetry

A major uncertainty in automated radio‐telemetry studies of small birds is the detection range of receiving antennas. We compared simultaneous daytime detections (± 30 s) by automated and manual radio‐telemetry to assess detection probability and the proportion of transmissions detected for birds on migratory stopover as a function of distance, foraging guild (Black‐throated Blue Warblers, Setophaga caerulescens, and Yellow‐rumped Warblers, Dendroica coronata coronata, represented mid‐canopy foliage gleaners and White‐throated Sparrows, Zonotrichia albicollis, represented a ground forager), habitat type, meteorological variables, tower antenna number (1–4), and the position of a bird relative to the receiving antenna's bearing (offset angle). Our study was conducted at a migratory stopover site in southern Ontario, Canada. Most detections were in dense to sparse forest, and all individuals were within 1.03 km of the automated receiving station. Daily detection probability was near 100% for both foraging guilds. However, within 30 s before and after a manual radio‐telemetry location was made, detection probability and the proportion of transmissions detected by automated radio‐telemetry declined with distance, was higher for warblers than sparrows, and was lowest for 90° offset angles. Our results suggest that when research goals do not require detections with high temporal frequency, e.g., estimation of departure date or daily departure probability, our study design had an effective detection range of at least 1 km. However, where temporal precision is required, e.g., to investigate movements and changes in activity levels during stopover, detection range was ~300 m for ground‐foraging sparrows and 600 m for mid‐canopy foraging warblers, which is much lower than the presumed detection range of antennas under optimal conditions (15 km). This corresponds to a spatial area of coverage for forest‐dwelling birds of ~0.3–1.1 km². Our results suggest that to optimally configure an automated radio‐telemetry array at the regional scale, investigators should carefully consider detection range and its underlying covariates, including species type, the habitat matrix, and the orientation of antennas relative to preferred habitat.     

Neuronal Ras activation inhibits adult hippocampal progenitor cell division and impairs spatial short‐term memory

A large number of endogenous and exogenous factors have been identified to upregulate and downregulate proliferation, differentiation and/or survival of newborn cells in the adult hippocampus. For studying neuronal mechanisms mediating the impact of those factors, we used a transgenic synRas mouse model expressing constitutively activated Valin12‐Harvey Ras selectively in differentiated neurons. BrdU injections showed significantly reduced proliferation of new cells within the adult hippocampus of transgenic animals compared with their wild‐type siblings. In contrast, the relative survival of newborn cells was increased in synRas mice, although this effect did not fully compensate for diminished proliferation. Inhibition of progenitor cell proliferation and enhancement of cellular survival were more pronounced in males compared with females. Double labelling and doublecortin immunostaining verified that specifically newborn neurons were decreased in synRas mice. Reduced cell generation was observed already 2 h after BrdU pulse injections, identifying an early precursor cell population as target of the inhibitory transgene effect. Differences in proliferation remained stable after 24 h and were specific for the subgranular zone of the dentate gyrus, as subventricular cell generation was not affected supporting a non‐cell autonomous effect on neural hippocampal progenitors. Transgene expression only starts with synaptic differentiation and therefore reduced proliferation must represent an indirect secondary consequence of synRas activity in differentiated neurons. This was associated with impaired spatial short‐term memory capacities as observed in a radial maze paradigm. Our data suggest that constantly high Ras activity in differentiated neurons downregulates hippocampal precursor cell generation in the neuronal lineage, but is modulated by sex‐dependent factors.     

Restorative mowing on an abandoned semi‐natural meadow: short‐term and predicted long‐term effects

Abstract. When management, in the form of cattle grazing and mowing, ceases the abundance of competitively superior plant species tends to increase in abandoned semi‐natural meadows. Litter accumulation elevates the soil nutrient levels and hinders seedling recruitment. We surveyed changes in plant cover and species composition of a formerly grazed meadow in permanent plots for six years. Some plots were unmown, while others were mown and raked annually in August. The cover of grasses decreased and herb cover remained unchanged regardless of the treatment. Mowing and raking significantly reduced litter accumulation and increased the number of ground layer species. The expected long‐term effects of abandonment and restorative mowing were studied by calculating the transition probabilities for unmown and mown plots and simulating the course of succession as projected by the transition matrices. During a simulation period of 30 yr, abandonment led to (1) a decrease in the cover of small herbs, (2) a slight increase in the cover of tall herbs and (3) a slight decrease in the cover of grasses. In contrast, the cover of small herbs on the mown plots remained unchanged or slightly increased during the course of simulation. These results suggest that mowing late in the season is primarily a management tool for the maintenance of the existing species diversity and composition. However, it may not be an effective restorative tool to induce overall changes in the resident vegetation of abandoned grass‐dominated meadows. Grazing or mowing early in the season may be more effective in this respect. Consequently, mowing early or, alternatively, late in the season may provide management strategies for the maintenance and restoration of species diversity, respectively.     

Chelation of hippocampal zinc enhances long‐term potentiation and synaptic tagging/capture in CA1 pyramidal neurons of aged rats: implications to aging and memory

Aging is associated with decline in cognitive functions, prominently in the memory consolidation and association capabilities. Hippocampus plays a crucial role in the formation and maintenance of long‐term associative memories, and a significant body of evidence shows that impairments in hippocampal function correlate with aging‐related memory loss. A number of studies have implicated alterations in hippocampal synaptic plasticity, such as long‐term potentiation (LTP), in age‐related cognitive decline although exact mechanisms underlying are not completely clear. Zinc deficiency and the resultant adverse effects on cognition have been well studied. However, the role of excess of zinc in synaptic plasticity, especially in aging, is not addressed well. Here, we have investigated the hippocampal zinc levels and the impairments in synaptic plasticity, such as LTP and synaptic tagging and capture (STC), in the CA1 region of acute hippocampal slices from 82‐ to 84‐week‐old male Wistar rats. We report increased zinc levels in the hippocampus of aged rats and also deficits in the tetani‐induced and dopaminergic agonist‐induced late‐LTP and STC. The observed deficits in synaptic plasticity were restored upon chelation of zinc using a cell‐permeable chelator. These data suggest that functional plasticity and associativity can be successfully established in aged neural networks by chelating zinc with cell‐permeable chelating agents.     

Assessing the effects of repeated handling on the physiology and condition of semi‐precocial nestlings

Repeated exposure to elevated levels of glucocorticoids during development can have long‐term detrimental effects on survival and fitness, potentially associated with increased telomere attrition. Nestling birds are regularly handled for ecological research, yet few authors have considered the potential for handling‐induced stress to influence hormonally mediated phenotypic development or bias interpretations of subsequent focal measurements. We experimentally manipulated the handling experience of the semi‐precocial nestlings of European Storm Petrel Hydrobates pelagicus to simulate handling in a typical field study and examined cumulative effects on physiology and condition in late postnatal development. Neither baseline corticosterone (the primary glucocorticoid in birds), telomere length nor body condition varied with the number of handling episodes. The absence of a response could be explained if Storm Petrels did not perceive handling to be stressful or if there is dissociation of the hypothalamic–pituitary–adrenal axis from stressful stimuli in early life. Eliciting a response to a stressor may be maladaptive for cavity‐dwelling young that are unable to escape or defend themselves. Furthermore, avoiding elevated overall glucocorticoid exposure may be particularly important in a long‐lived species, in which accelerated early‐life telomere erosion could impact negatively upon longevity. We propose that the level of colony‐wide disturbance induced by investigator handling of young could be important in underlining species‐specific responses. Storm Petrel nestlings appear unresponsive to investigator handling within the limits of handling in a typical field study and handling at this level should not bias physiological and morphological measurements.     

No short‐term change in avian assemblage following removal of Yellow‐throated Miner (Manorina flavigula) colonies

The overabundance of Yellow‐throated Miner (Manorina flavigula) has been shown to negatively affect the abundance and richness of small birds in areas they occupy, leading to homogenization of the avifauna across the fragmented landscape. In this study, we took advantage of a planned management cull to ask the question, does the removal of Yellow‐throated Miner colonies cause an immediate change in avian species richness and abundance? This cull was undertaken around the Bronzewing Flora and Fauna Reserve (north‐western Victoria, Australia) in order to protect a resident population of endangered Black‐eared Miner (M. melanotis) from hybridization. We conducted avian surveys along roadsides surrounding the reserve at Yellow‐throated Miner colonies (n = 6), control sites with no miners (n = 7), and where colonies were removed (n = 3). We found that the cull was followed by only a very modest increase in the species richness and abundance of small birds, with no significant effects on avian assemblage overall. This result contrasts with far more dramatic increases following culls of other species of miner. Sites where miners were removed were not depauperate of other species prior to the cull, which could have been due to a combination of proximity to refuge for small birds in a neighbouring reserve or the low numbers of miners that made up each culled colony. This study highlights that assumed effects of a management action may be highly dependent upon spatial and temporal context.     

No short‐ or long‐term effects of geolocator attachment detected in Pied Flycatchers Ficedula hypoleuca

Tracking small passerines using miniaturized location tags is a rapidly expanding field of study. In a 1‐year study, we tested whether there were any short‐ or longer‐term effects of fitting geolocators weighing 3% of body mass on male Pied Flycatchers Ficedula hypoleuca. In the deployment year, we compared adult provisioning rates to nestlings, nestling growth and nest success between nesting attempts in which adult males were fitted with a geolocator, with control nests where males had the same capture history but were not tagged. We found no difference between treatments in provisioning effort by males or their associated female 2 days after geolocator fitting, in terms of nestling growth, subsequent brood reduction or nest success. Return rate, arrival date on territories, nest timing and breeding parameters were compared between tagged and untagged males in the following breeding season. We found no difference in return rate or arrival date, and no difference in nest timing, fecundity or outcome. Our study suggests that fitting lightweight tags to small passerines need not affect behaviour, breeding or apparent between‐year survival. However, tagging new species should still require assessment and comparison with well‐matched control cohorts, and it should be recognized that tag effects could vary between years and populations, mediated by environmental conditions.     

The effect of catch‐and‐release angling at high water temperatures on behaviour and survival of Atlantic salmon Salmo salar during spawning migration

In this study, behaviour and survival following catch‐and‐release (C&R) angling was investigated in wild Atlantic salmon Salmo salar (n = 75) angled on sport fishing gear in the River Otra in southern Norway at water temperatures of 16·3–21·1° C. Salmo salar were tagged externally with radio transmitters and immediately released back into the river to simulate a realistic C&R situation. The majority of S. salar (91%) survived C&R. Most S. salar that were present in the River Otra during the spawning period 3–4 months later were located at known spawning grounds. Downstream movements (median furthest position: 0·5 km, range: 0·1–11·0 km) during the first 4 days after release were recorded for 72% of S. salar, presumably stress‐induced fallback associated with C&R. Individuals that fell back spent a median of 15 days before commencing their first upstream movement after release, and 34 days before they returned to or were located above their release site. Mortality appeared to be somewhat elevated at the higher end of the temperature range (14% at 18–21° C), although sample sizes were low. In conclusion, C&R at water temperatures up to 18° C had small behavioural consequences and was associated with low mortality (7%). Nevertheless, low levels of mortality occur due to C&R angling and these losses should be accounted for by management authorities in rivers where C&R is practised. Refinement of best practices for C&R may help to reduce mortality, particularly at warmer temperatures.     

Soil moisture variations affect short‐term plant‐microbial competition for ammonium,glycine, and glutamate

We tested whether the presence of plant roots would impair the uptake of ammonium (), glycine, and glutamate by microorganisms in a deciduous forest soil exposed to constant or variable moisture in a short‐term (24‐h) experiment. The uptake of ¹⁵NH₄ and dual labeled amino acids by the grass Festuca gigantea L. and soil microorganisms was determined in planted and unplanted soils maintained at 60% WHC (water holding capacity) or subject to drying and rewetting. The experiment used a design by which competition was tested in soils that were primed by plant roots to the same extent in the planted and unplanted treatments. Festuca gigantea had no effect on microbial N uptake in the constant moist soil, but its presence doubled the microbial uptake in the dried and rewetted soil compared with the constant moist. The drying and rewetting reduced by half or more the uptake by F. gigantea, despite more than 60% increase in the soil concentration of . At the same time, the amino acid and ‐ N became equally valued in the plant uptake, suggesting that plants used amino acids to compensate for the lower acquisition. Our results demonstrate the flexibility in plant‐microbial use of different N sources in response to soil moisture fluctuations and emphasize the importance of including transient soil conditions in experiments on resource competition between plants and soil microorganisms. Competition between plants and microorganisms for N is demonstrated by a combination of removal of one of the potential competitors, the plant, and subsequent observations of the uptake of N in the organisms in soils that differ only in the physical presence and absence of the plant during a short assay. Those conditions are necessary to unequivocally test for competition.