Forest structure of a subtropical mangrove along a river inferred from potential tree height and biomass

The hypothesis was tested that potential tree height and biomass in mangroves decrease downstream with the tidal gradient along the Okukubi River in Okinawa Island, Japan. The mangrove stands consisted of Bruguiera gymnorrhiza (L.) Lamk. and Kandelia obovata (S., L.) Yong (Rhizophoraceae). Four sites were selected considering the distance from the mouth of the river. Soil salinity increased downstream, while soil total nitrogen content decreased. The soil redox potential did not vary along the river. Maximum gross photosynthesis and tree height for each species decreased downstream. The potential tree height (H_max) inferred from the stem diameter (D_0.1)–tree height (H) relationship ( a, h, coefficient) in each species decreased downstream. The tree density (ρ)–mean tree size () relationships ( K, α, coefficient) determined for four sites revealed that the mean tree size at any given tree density decreased downstream, which indicates the decrease of potential biomass. Furthermore, an index for biomass () was homogeneous within a site regardless of tree density, i.e. the value of α at each site did not differ significantly from 1.0 (p > 0.05). The decreases in potential tree height and biomass may be partially ascribed to the stressful environments at the downstream sites characterized by high salinity (>2.6%) and nitrogen-poor soils (<0.25 ppt) in our study area.     

Further mechanistic orientation for the oxidation reaction between alkaline permanganate and poly galacturonate methyl ester. Novel spectrophotometric tracer of intrahypomanganate(V) – Intermediate

The kinetics of formation of the green manganate(VI) intermediate complex formed during the oxidation of pectin polysaccharide (poly galacturonate methyl ester) (PGME) by in alkaline solution at pH  12 have been studied. The rate law was suggested to be: rate = . The reaction was found to be base – catalyzed and fractional second – order in [PGME]. The activation parameters have been evaluated and discussed. A reaction mechanism was suggested according to the experimental data. A new blue hypomanganate(V) coordination polymer intermediate sol was spectrophotometrically detected for the first time for pectin (poly galacturonate methyl ester) oxidation reaction. A further mechanistic presentation was proposed.     

Evolution under the multilocus Levene model without epistasis

Evolution under the multilocus Levene model is investigated. The linkage map is arbitrary, but epistasis is absent. The geometric-mean fitness, , depends only on the vector of gene frequencies, ρ; it is nondecreasing, and the single-generation change is zero only on the set, Λ, of gametic frequencies at gene-frequency equilibrium. The internal gene-frequency equilibria are the stationary points of . If the equilibrium points of ρ(t) (where t denotes time in generations) are isolated, as is generic, then ρ(t) converges as t→∞ to some . Generically, ρ(t) converges to a local maximum of . Write the vector of gametic frequencies, p, as , where d represents the vector of linkage disequilibria. If is a local maximum of , then the equilibrium point is asymptotically stable. If either there are only two loci or there is no dominance, then d(t)→0 globally as t→∞. In the second case, has a unique maximum and is globally asymptotically stable. If underdominance and overdominance are excluded, and if at each locus, the degree of dominance is deme independent for every pair of alleles, then the following results also hold. There exists exactly one stable gene-frequency equilibrium (point or manifold), and it is globally attracting. If an internal gene-frequency equilibrium exists, it is globally asymptotically stable. On Λ, (i) the number of demes, Γ, is a generic upper bound on the number of alleles present per locus; and (ii) if every locus is diallelic, generically at most Γ−1 loci can segregate. Finally, if migration and selection are completely arbitrary except that the latter is uniform (i.e., deme independent), then every uniform selection equilibrium is a migration-selection equilibrium and generically has the same stability as under pure selection.     

Kinetic studies on the Rhizomucor miehei lipase catalyzed esterification reaction of oleic acid with 1-butanol in a biphasic system

The kinetics of the esterification of oleic acid with 1-butanol catalyzed by free Rhizomucor miehei lipase in a biphasic system was studied in a batch reactor. The reaction appeared to proceed via a Ping Pong bi–bi mechanism with 1-butanol inhibition. The kinetic constants of the model were determined from experiments at 30 °C with initial concentrations of oleic acid and 1-butanol in the organic phase and 0.05–0.2 g L⁻¹ enzyme in the aqueous phase. The model was used to simulate the batch concentration profiles of the product as well as the initial reaction rates. Agreement of the model with both the batch concentration profiles (average error of 7.2%) and the initial reaction rate per experiment (average error of 16.0%) was good.     

NO detection in biological samples: Differentiation of NO and NO using infrared laser spectroscopy

Accurate characterization of the biochemical pathways of nitric oxide (NO) is essential for investigations in the field of NO research. To analyze the different reaction pathways of enzymatic and non-enzymatic NO formation, determination of the source of NO is crucial. Measuring NO-related products in biological samples distinguishing between ¹⁴NO and ¹⁵NO offers the opportunity to specifically analyze NO signaling in blood and tissue. The aim of this study was to establish a highly sensitive technique for the specific measurement of NO in an isotopologue-selective manner in biological samples.With the cavity leak-out spectroscopy setup (CALOS) a differentiation between ¹⁴NO and ¹⁵NO is feasible. We describe here the employment of this method for measurements in biological samples. Certified gas mixtures of ¹⁴NO/N₂ and ¹⁵NO/N₂ were used to calibrate the system. and of aqueous and biological samples were reduced in a triiodide solution, and the NO released was detected via CALOS. Gas-phase chemiluminescence detection (CLD) was used for evaluation.The correlation received for both methods for the detection of NO in the gas phase was r = 0.999, p < 0.0001. Results obtained using aqueous and biological samples verified that CALOS enables NO measurements with high accuracy (detection limit for 0.3 pmol and 0.5 pmol; correlation ¹⁴NO: p < 0.0001, r = 0.975, ¹⁵NO: p < 0.0001, r = 0.969).The CALOS assay represents an extension of NO measurements in biological samples, allowing specific investigations of enzymatic and non-enzymatic NO formation and metabolism in a variety of samples.     

Leaf chlorophyll fluorescence, reflectance, and physiological response to freshwater and saltwater flooding in the evergreen shrub, Myrica cerifera

Photosynthesis, water relations, chlorophyll fluorescence, and leaf reflectance were used to evaluate stress due to freshwater and saltwater flooding in the evergreen coastal shrub, Myrica cerifera, under controlled conditions. M. cerifera forms large monospecific thickets that facilitate scaling up from leaf-level measurements to the landscape. Based on physiological responses, stress began by day 3 in flooded plants treated with 5, 10, and 15 g L⁻¹ salinity, as seen by significant decreases in stomatal conductance and net photosynthesis relative to control plants. Decreases in physiological measurements occurred by day 9 in freshwater flooded plants. Visible signs of stress occurred by day 5 for plants treated with 15 g L⁻¹, day 8 for flooded plants exposed to 10 g L⁻¹, and day 10 for those treated with 5 g L⁻¹ salinity. Significant differences in light-adapted fluorescence yield () were observed by day 3 in plants flooded with 5, 10, and 15 g L⁻¹ salinity and day 6 in freshwater flooded plants. Non-photochemical quenching (Φ_NPQ) increased with decreasing . In comparison, statistical differences in dark-adapted fluorescence yield (F_v/F_m) were observed by day 12 in plants flooded with 5, 10, and 15 g L⁻¹ salinity, well after visible signs of stress were apparent. Fluorescence parameters were successful at detecting and distinguishing both freshwater and saltwater flooding stress. A positive, linear correlation (r² = 0.80) was observed between and the physiological reflectance index (PRI). Xanthophyll-cycle dependent energy dissipation appears to be the underlying mechanism in protecting photosystem II from excess energy in saltwater flooded plants. was useful in detecting stress-induced changes in the photosystem before any visible signs of damage were evident at the leaf-level. This parameter may be linked to hyperspectral reflectance data for rapid detection of stress at the canopy-level.     

Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects

A maximum likelihood reconstruction method for an asymmetric reconstruction of the infectious P22 bacteriophage virion is described and demonstrated on a subset of the images used in [Lander, G.C., Tang, L., Casjens, S.R., Gilcrease, E.B., Prevelige, P., Poliakov, A., Potter, C.S., Carragher, B., Johnson, J.E., 2006. The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science 312(5781), 1791–1795]. The method makes no assumptions at any stage regarding the structure of the phage tail or the relative rotational orientation of the phage tail and capsid but rather the structure and the rotation angle are determined as a part of the analysis. A statistical method for determining resolution consistent with maximum likelihood principles based on ideas for cylinders analogous to the ideas for spheres that are embedded in the Fourier Shell Correlation method is described and demonstrated on the P22 reconstruction. With a correlation threshold of .95, the resolution in the tail measured radially is greater than (33.3 Å) and measured axially is greater than (70.6 Å) both with probability p=0.02.     

Human influences on mobility of nitrogen in the environment: Needs for research and management

Nitrogen (N) cycles through air, water and soil and plays an important role in the synthesis of complex N compounds in all forms of life on the planet earth by combining with carbon, hydrogen and oxygen (O). Besides, natural fixation of N by microorganisms, advertent and inadvertent fixation of N by human activities (e.g. landscape transformations, fossil fuel burning and use of N in agricultural fields) are altering the global cycle of N. As a result of human activities, N enters in water bodies (e.g. streams, estuaries and coastal regions) making them hostile for aquatic life and contaminates ground water (used for drinking) through nitrate () leaching which causes a number of health problems to human beings and animals. Hence, reduction in level of in water bodies and ground water is a prerequisite that can be met through sustainable management of natural and modified ecosystems. More specifically, agricultural management practices need to be better designed to synchronize the availability of with that of the crop N demand. These management goals can be achieved by thorough understanding of the origin and fate of N, by using isotopic analysis of N and O in , which can provide the best management options for N in the environment. Overall, an integrated approach would be required to limit N production/use and release to prevent critical environmental limit being exceeded.     

A new miniature species of the genus Triplophysa (Balitoridae: Nemacheilinae) from Yunnan, China

During a re-examination of museum specimens of Triplophysa species, some specimens that had been collected from the Jialonghe River in Yunnan Province, China, in April 1975, were identified as a new species. Triplophysa parvus n. sp. can be distinguished by the following combination of characters: dorsal fin rays 3, ; anal fin rays 3, ; pectoral fin rays 1, 11; scales absent; two saddle-like blotches with fuzzy borders cranial to the dorsal fin and four saddle-like blotches caudal to the dorsal fin; distal margin of the dorsal fin emarginate; pelvic fin reaching caudally almost to the anus; anus located immediately cranial to the origin of the anal fin; caudal fin forked; caudal chamber of air bladder reduced to a small free protuberance; head slightly laterally compressed, head deeper than wide at nape; length of caudal peduncle being 18.0–20.0% of standard length; depth of caudal peduncle being 7.8–8.4% of standard length; eye diameter 17.6–21.4% of head length; body depth being 60.7–70.2% of head length; caudal peduncle depth being 39.1–45.0% of caudal peduncle length; and body width at the base of caudal peduncle 59.0–68.0% of the body depth at the base of caudal peduncle. These characters allow a distinction from the similar species of T. nasobarbatula, T. nandanensis, and T. macromaculata.     

Kinetic and thermodynamic characterization of the cold activity acquired upon single amino-acid substitution near the active site of a thermostable α-glucosidase

The α-glucosidase of Bacillus sp. SAM1606, a thermophilic bacterium, is a thermostable enzyme that has maximal activity at an apparent optimal temperature between 65 and 70 °C and only very low activity at low temperatures (0–25 °C). In this study, we identified Thr272, which is located adjacent to Glu271 (a catalytic residue) and Gly273 (a determinant of specificity), as a determinant of the optimal temperature, as substitution of Thr272 with other residues significantly altered the temperature–activity profile of the enzyme. Substitution of Thr272 with other amino acids, in particular bulky hydrophobic residues such as valine, methionine and phenylalanine, resulted in a significant downward shift (by 30 °C) of the apparent optimal temperature with an increase in catalytic activity at low temperatures. The observed downward shift of the apparent optimal temperature was not due to instability of the mutants at 40–65 °C, as the mutants were stable at temperatures up to 65 °C. Among the mutants examined, T272V displayed the highest k_cat values at 10–25 °C, which was at least 11-fold greater than the k_cat value observed for the wild-type enzyme. The thermodynamic characteristics of reactions catalyzed by T272V, T272M, T272F, and wild type at 25 °C were examined in greater detail. The T272V, T272M and T272F mutants displayed large K_s (or K_m) values and reduced and values at 25 °C, consistent with the general features of cold adaptation. The observed cold activities of T272V, T272M and T272F most likely arose from local flexibility of the active site at low temperatures due to loss of a Thr272-mediated hydrogen bond. However, this hydrogen-bond loss likely permits reversible conformational changes of the active site to less active forms at elevated temperatures (e.g., 60 °C). This may explain why catalytic activities for T272V, T272M and T272F at high temperatures (e.g., 60 °C) were lower than those at low temperature (e.g., 25 °C), even though the mutant enzymes appeared stable at 60 °C.     

Green liquor dregs effect on Kraft mill secondary sludge composting

Increased Kraft pulp mill production generates increased solid wastes. In response, composting has emerged as an interesting alternative for disposal of these solid wastes.A central composite factor design was used to investigate the influence of incubation conditions (dregs addition and operation time) on chemical and biological parameters, determining the best in-vessel conditions in order to develop a correct composting design.Dregs helped reduce the pH drop that occurs at the beginning of the process. Biological activities presented high values during the active phase, followed by a decrease with stable final values along with N– and N– trend, which were indicative of mature compost.Dregs addition had not significant effect on the biological activities during composting of Kraft mill sludge. However, moderate amounts of dregs (between 5% and 8%) at operation time of 60–70 days would be the best compromise.     

Testing German shepherd puppies to assess their chances of certification

Behavioral activity of 7-week-old German shepherd puppies was tested and the activities analyzed if they could be used for predicting police efficiency of the individual. In total 206 individuals sired by 42 sires and 44 dams were used. The activities were divided into 10 tasks in which reactions and behavior of pups were scored from 0 to 5 points. All pups were tested separately from other conspecifics. Probability that the puppy will pass the certification was tested by a logistic regression. Of the 206 puppies, 148 passed the certification while 58 failed. Some tested behavioral variables were moderately to highly correlated with one another. Therefore we applied a factor analysis. Three factors were retained accounting for 100% of the shared variance. After inspection of the rotated factor pattern matrix and its confidence intervals, it appeared that variables “Independent movement and interactions with the tester”, “Negotiating obstacles”, “Entering a room”, “Behavior toward a person”, and “Behavior in new environments” loaded on Factor 1 (“Factor for movement”), while variables “Response to distracting stimuli caused by a shovel”, “Response to a distracting noise while left alone in a room”, and “Response to loud distracting stimuli” on Factor 2 (“Factor for responding to noise”) and variables “Retrieval” and “Tug of war” on Factor 3 (“Factor for attitude to predation”). In the final logistic regression model, the probability that the puppy will pass the certification depended on the higher weight at the time of testing (, P = 0.0005), on the “Factor for attitude to predation” (, P = 0.0007), on the “Factor for responding to noise”, where the higher the score, the weaker was the response (, P = 0.0232), and on the “Factor for movement” showing an increasing probability with decreasing score (, P = 0.0219). The tests in our study seem to be a good base which might enable selection for suitable dogs as early as 7 weeks of age. The puppies having high probability to pass certification in adulthood were heavy individuals willing to chase, catch, and fetch a tennis ball, and follow a rag drawn away from them, while weakly responding to a distracting noise in various situations and showing low activity while negotiating obstacles and moving and interacting with the tester. To conclude, contrary to skeptical assumptions expressed by various authors, the specific puppy tests for police dogs provide a reliable tool for predicting future service ability of a puppy. Differences in methodology are likely to contribute to a lack of consensus among various studies.     

A habitat-based model for the spread of hantavirus between reservoir and spillover species

New habitat-based models for spread of hantavirus are developed which account for interspecies interaction. Existing habitat-based models do not consider interspecies pathogen transmission, a primary route for emergence of new infectious diseases and reservoirs in wildlife and man. The modeling of interspecies transmission has the potential to provide more accurate predictions of disease persistence and emergence dynamics. The new models are motivated by our recent work on hantavirus in rodent communities in Paraguay. Our Paraguayan data illustrate the spatial and temporal overlaps among rodent species, one of which is the reservoir species for Jabora virus and others which are spillover species. Disease transmission occurs when their habitats overlap. Two mathematical models, a system of ordinary differential equations (ODE) and a continuous-time Markov chain (CTMC) model, are developed for spread of hantavirus between a reservoir and a spillover species. Analysis of a special case of the ODE model provides an explicit expression for the basic reproduction number, , such that if , then the pathogen does not persist in either population but if , pathogen outbreaks or persistence may occur. Numerical simulations of the CTMC model display sporadic disease incidence, a new behavior of our habitat-based model, not present in other models, but which is a prominent feature of the seroprevalence data from Paraguay. Environmental changes that result in greater habitat overlap result in more encounters among various species that may lead to pathogen outbreaks and pathogen establishment in a new host.     

Photonic crystal nanostructures for optical biosensing applications

We present the design, fabrication and optical investigation of photonic crystal (PhC) nanocavity drop filters for use as optical biosensors. The resonant cavity mode wavelength and Q-factor are studied as a function of the ambient refractive index and as a function of adsorbed proteins (bovine serum albumin) on the sensor surface. Experiments were performed by evanescent excitation of the cavity mode via a PhC waveguide. This in turn is coupled to a ridge waveguide that allows the introduction of a fluid flow cell on a chip. A response of ∂λ/∂c=(4.54±0.66)×10⁵ nm/M is measured leading to a measured detection limit as good as  fg or  pg/mm²in the sensitive area.     

The molecular structure of waxy maize starch nanocrystals

The insoluble residues obtained by submitting amylopectin-rich native starch granules from waxy maize to a mild acid hydrolysis consist of polydisperse platelet nanocrystals that have retained the allomorphic type of the parent granules. The present investigation is a detailed characterization of their molecular composition. Two major groups of dextrins were found in the nanocrystals and were isolated. Each group was then structurally characterized using β-amylase and debranching enzymes (isoamylase and pullulanase) in combination with anion-exchange chromatography. The chain lengths of the dextrins in both groups corresponded with the thickness of the crystalline lamellae in the starch granules. Only 62 mol % of the group of smaller dextrins with an average degree of polymerization () 12.2 was linear, whereas the rest consisted of branched dextrins. The group of larger dextrins ( 31.7) apparently only consisted of branched dextrins, several of which were multiply branched molecules. It was shown that many of the branch linkages were resistant to the action of the debranching enzymes. The distribution of branched molecules in the two populations of dextrins suggested that the nanocrystals possessed a regular and principally homogeneous molecular structure.     

Clicker increases resistance to extinction but does not decrease training time of a simple operant task in domestic dogs (Canis familiaris)

Despite its popularity among pet owners and professional trainers, we are not aware of any studies that have investigated the efficacy of clicker training in canines. To this end, we taught 35 basenjis to nose-touch an orange traffic cone. Upon meeting pre-determined criteria, dogs progressed through: (1) training trials, wherein correct responses were followed immediately with a click plus food (clicker group) or food alone (control group); (2) strengthening trials, wherein dogs received the same reinforcement protocol as in training trials, except nose-touching behaviour was variably reinforced; and (3) extinction trials, wherein food was withheld from both groups, but dogs in the clicker group received a click alone for nose-touches. We found that the clicker and control groups did not differ with regard to the number of trials or the time required to meet training or strengthening criteria (P > 0.05 for all). However, the clicker group required significantly more trials (log₁₀ transformed means ± S.E. = 1.6 ± 0.03 trials versus 1.4 ± 0.03 trials, P < 0.001) and more time (log₁₀ transformed means ± S.E. = 2.85 ± 0.03 s versus 2.73 ± 0.03 s, P = 0.008) to reach extinction criterion. Additionally, younger dogs required fewer training (, P = 0.001) and strengthening (, P = 0.029) trials and less training (, P = 0.005) and strengthening (, P = 0.013) time to meet criteria than did older dogs. However, no age effect was found on extinction for either the number or duration of trials (P > 0.05 for both), implying that persistence in previously reinforced behaviour did not influence the age sensitivity found in task acquisition. Overall, these results suggest that, whereas the clicker may prolong behaviour without primary reinforcement, it does not reduce the training time of a simple operant task in dogs when primary reinforcement is briefly delayed. We speculate that the clicker may be most useful in maintaining established behaviours when primary reinforcement is unavailable or when its delivery is impractical. Additionally, we found that basenji dogs may become progressively impaired with age in the acquisition of stimulus-reward contingencies.     

Nitric oxide alleviates arsenic toxicity by reducing oxidative damage in the roots of Oryza sativa (rice)

Nitric oxide (NO) is a bioactive gaseous, multifunctional molecule playing a central role and mediating a variety of physiological processes and responses to biotic and abiotic stresses including heavy metals. The present study investigated whether NO applied exogenously as sodium nitroprusside (SNP) has any protective role against arsenic (As) toxicity in Oryza sativa (rice). Treatment with 50 μM SNP (a NO donor) significantly ameliorated the As-induced (25 or 50 μM) decrease in root and coleoptile length of rice. Further, As-induced oxidative stress measured in terms of malondialdehyde (MDA), superoxide ion (), root oxidizability and H₂O₂ content was lesser upon supplementation of NO. It indicated a reactive oxygen species (ROS) scavenging activity of NO. NO addition reversed (only partially) the As-induced increase in activities of antioxidant enzymes – superoxide dismutase, ascorbate peroxidase, guaiacol peroxidase, and catalase. The study concludes that exogenous NO provides resistance to rice against As-toxicity and has an ameliorating effect against As-induced stress.     

Physicochemical properties and antitumor activities for sulfated derivatives of lentinan

Five fractions of lentinan, a β-(1→3)-d-glucan bearing β-(1→6)-d-glucopyranosyl branches, were treated with chlorosulfonic acid for 90 min at 60 °C in pyridine medium to synthesize water-soluble sulfated derivatives having the substitution degree of 1.44–1.76. The ¹³C NMR spectra of the sulfated β-glucans indicated that the C-6 position was preferentially substituted by the sulfate groups. The values of the weight-average molecular weight (M_w), radius of gyration (), and intrinsic viscosity ([η]) of the sulfated lentinan fractions were determined by size-exclusion chromatography with multi-angle laser light scattering (SEC–MALLS) and viscometry in 0.15 M aq NaCl at 25 °C, respectively. The dependence of [η] on M_w for the sulfated lentinan was found to be [η] = 8.93 × 10⁻³ (mL/g) in 0.15 M aq NaCl (for M_w ranging from 14.6 × 10⁴ to 50.4 × 10⁴). On the basis of the Yamakawa–Fujii–Yoshizaki (YFY) theory, the conformational parameters of the sulfated lentinan were calculated as 950 nm⁻¹ for the molar mass per unit contour length (M_L), 4.8 nm for the persistence length (q), and 13.9 for the characteristic ratio (C_∞), indicating relatively extended single flexible chains in solution. The sulfated glucan fractions exhibited in vitro antiproliferative activities against sarcoma 180 (S-180) cells, and their inhibition ratios were lower than that of the triple-helix lentinan, but higher than that for the one with single random-coil lentinan chains.     

Measurement of the apparent diffusivity of ethylene glycol in mouse ovaries through rapid MRI and theoretical investigation of cryoprotectant perfusion procedures

Successful organ cryopreservation will significantly benefit human health and biomedical research. One of the major challenges to this accomplishment is the need for optimization of cryoprotectant agent (CPA) perfusion procedures that involve highly complicated mass transfer processes in organs. The diffusivity of CPA is of critical importance for designing perfusion procedures to minimize the associated toxicity and osmotic damage. However, to date there have been no attempts to measure the CPA diffusivity in organs. In this study, we established a simple CPA diffusion model for relatively small organs, e.g., mouse ovaries, defined the apparent diffusivity () of CPA for these organs, and established a practical approach to measure the value of through magnetic resonant imaging (MRI). Using rapid MRI techniques and water saturation analyses, the distribution of ethylene glycol (EG) concentration in the centric cross-section of mouse ovaries was measured at a series of time points during perfusion, and these data were fit to the integral form of the mass transfer equation in the established model. These fits resulted in a value of for EG in mouse ovaries of 6.1 ± 1.4 × 10⁻⁷ cm²/s (mean ± SD). Based on these results, we proposed a modified perfusion procedure that may improve the survival of small organs or thin tissues during equilibrium cooling processes and assessed its efficiency through theoretical analyses.     

Microbial degradation and detoxification of 2,4-dinitrophenol in aerobic and anoxic processes

A bacterial strain was isolated from a river sediment in Buenos Aires, Argentina, owing to its ability to utilize 2,4-dinitrophenol (2,4-DNP) as the sole carbon, nitrogen and energy source. The strain was identified as Rhodococcus opacus on the basis of its 16S rRNA gene sequence. R. opacus degrades aerobically 0.27 and 0.54 mM within 22 and 28 h, respectively, and releases the nitro groups from 2,4-DNP as nitrites. Aerobic biodegradation processes were performed using a 2-l volume microfermentor at with agitation (200 rpm), and were evaluated by spectrophotometry, high performance liquid chromatography (HPLC) and microbial growth. The absence of 2,4-DNP transformation products was also confirmed by gas chromatography mass spectrometry (GC–MS). As the nitrite released during 2,4-DNP degradation is in addition an environmental toxic agent it was removed by denitrification in an anoxic process. Detoxification was assessed by using luminescent bacteria, algae and seeds toxicity tests. Toxicity was not detected after combining both the aerobic and anoxic processes.