Using genetic techniques to quantify reinvasion,survival and in situ breeding rates during control operations

Determining the origin of individuals caught during a control/eradication programme enables conservation managers to assess the reinvasion rates of their target species and evaluate the level of success of their control methods. We examine how genetic techniques can focus management by distinguishing between hypotheses of ‘reinvasion’ and ‘survivor’, and defining kin groups for invasive stoats (Mustela erminea) on Secretary Island, New Zealand. 205 stoats caught on the island were genotyped at 16 microsatellite loci, along with 40 stoats from the opposing mainland coast, and the age and sex were determined for each individual. Using these data, we compare and combine a variety of genetic techniques including genetic clustering, population assignment and kinship‐based techniques to assess the origin of each stoat. The population history and individual movement could be described in fine detail, with results indicating that both in‐situ survival and breeding, and reinvasion are occurring. Immigration to the island was found to be generally low, apart from in 1 year where around 8 stoats emigrated from the mainland. This increased immigration was probably linked to a stoat population spike on the mainland in that year, caused by a masting event of southern beech forest (Nothofagus sp.) and the subsequent rodent irruption. Our study provides an example of some of the ways genetic analyses can feed directly into informing management practices for invasive species.     

The effects of mice on stoats in southern beech forests

Introduced stoats (Mustela erminea) are important invasive predators in southern beech (Nothofagus sp.) forests in New Zealand. In these forests, one of their primary prey species – introduced house mice (Mus musculus), fluctuate dramatically between years, driven by the irregular heavy seed‐fall (masting) of the beech trees. We examined the effects of mice on stoats in this system by comparing the weights, age structure and population densities of stoats caught on two large islands in Fiordland, New Zealand – one that has mice (Resolution Island) and one that does not (Secretary Island). On Resolution Island, the stoat population showed a history of recruitment spikes and troughs linked to beech masting, whereas the Secretary Island population had more constant recruitment, indicating that rodents are probably the primary cause for the ‘boom and bust’ population cycle of stoats in beech forests. Resolutions Island stoats were 10% heavier on average than Secretary Island stoats, supporting the hypothesis that the availability of larger prey (mice verses wētā) leads to larger stoats. Beech masting years on this island were also correlated with a higher weight for stoats born in the year of the masting event. The detailed demographic information on the stoat populations of these two islands supports previously suggested interactions among mice, stoats and beech masting. These interactions may have important consequences for the endemic species that interact with fluctuating populations of mice and stoats.     

Eradication of cats (Felis catus) from subantarctic Macquarie Island

The feral Cat (Felis catus) population on Macquarie Island was targeted for eradication between 1996 and 2002, with 761 cats captured during this period. After 22 years of cat control from 1974 integrated with control programmes for other pests, effort intensified for 2 years before a dedicated eradication programme began in 1998. The primary knock‐down for the eradication used cage trapping and shooting, with most surviving cats captured with leg‐hold traps. A total of 6298 field days and 216 574 trap nights were recorded in this operation. Factors contributing to the success of the programme included extensive planning, increased staff numbers at critical times, better access to remote areas of the island, introduction of leg‐hold traps, sufficient operational funding and good collaboration between government agencies operating on the island. The programme would have benefited from earlier deployment of detector dogs and better posteradication monitoring of a broader range of native species impacted by cats. The successful eradication of cats from Macquarie Island, being the second largest achieved to date, provides valuable experience for cat eradication attempts on other large remote islands. This programme relied on ground‐based techniques with minimal use of poisons and provides possible options for sites where broad‐scale poisoning, or where aerial distribution of poisons, cannot be used.     

Lack of movement of stoats (

Little is known about the movement of stoats in alpine grassland, where several species of native birds, reptiles and invertebrates are potentially at risk from predation. Radio-tracking, live trapping and tracking tunnel techniques were used to sample stoats in two adjacent habitats to determine whether the home range of stoats in beech forest valley floors extends into neighbouring alpine grasslands in the Ettrick Burn Valley, Fiordland. If this is the case then trapping stoats in the more easily accessible beech forest valley floors might serve to protect endangered species inhabiting the adjacent but more remote alpine grasslands. Between December 2000 and March 2001, 415 radio locations were collected on 15 stoats and none were observed to make any significant movements between the two habitats. Stoats were active in alpine grasslands, and trapping in the adjacent beech forest valley would not have caught those stoats during the time-frame of this study. Further research is needed to determine long term impacts of trapping in beech forest on stoats in alpine grasslands. During the timeframe of this research stoats were more abundant in beech forest than in alpine grasslands, and tracking tunnels showed this trend to be consistent at other sites.     

Stoat density, diet and survival compared between alpine grassland and beech forest habitats

In New Zealand, alpine grasslands occur above the treeline of beech forest. Historically stoat control paradigms in New Zealand?s montane natural areas have assumed alpine grassland is a marginal habitat that limits dispersal between beech forest stoat populations. We compared the summer-to-autumn (January?April) density, weight, diet and winter survival of stoats between these two habitatsduring years of low beech seedfall. Stoats were live-trapped, marked and released in alpine grassland and low-altitude beech forest in the Borland Valley, Fiordland National Park, during 2003 and 2004, and were caught and euthanased for necropsy in 2005. Stoat density was estimated using spatially explicit capture?recapture (SECR). The proportion of stoats marked in one year but recaptured in the next was used as a measure of ?observed survival?. Prey remains were identified from scats collected during 2003 and 2004 and stomachs from stoats killed in 2005. Stoat density was similar in both habitats over the two years, about one stoat per square kilometre. Observed survival from 2003?2004 was also similar, but survival from 2004?2005 was higher in alpine grassland than in beech forest. In 2003, male stoats were on average heavier in alpine grassland than in beech forest, although average weights were similar in the other years. Diet differed significantly between the two habitats, with stoats in alpine grasslands eating mainly ground weta (a large invertebrate) (72%) and hares (23%), while stoats in beech forest ate mainly birds (31%) and mice (19%). Collectively these results suggest that alpine grasslands are not a poor quality habitat for stoats. Traditionally it has been thought that stoats cannot survive on invertebrate prey alone. This research demonstrates that stoats relying largely on invertebrate prey can occur at similar densities and with equivalent survival to stoats relying on vertebrate prey.     

Semiochemical attractants for the beech leaf‐mining weevil,Orchestes fagi

The beech leaf‐mining weevil, Orchestes fagi L. (Curculionidae: Curculioninae: Rhamphini), a pest of European beech, Fagus sylvatica L. (Fagaceae), was recently discovered infesting American beech, Fagus grandifolia Ehrh., in Nova Scotia, Canada. Adult O. fagi feed on both young and mature leaves of beech as well as on other species (e.g., raspberry, Rubus spp.), but oviposition and larval feeding are restricted to beech. Females oviposit in young developing beech leaves at the time of bud burst. We characterized volatiles emitted from buds, leaves, and sapwood of American beech and examined their potential as attractants alone or when combined with other weevil pheromones for O. fagi. We predicted that adults would be attracted to volatiles emitted from beech leaves, especially those emitted from bursting beech buds. Gas chromatography/mass spectrometry (GC/MS) analyses of volatiles collected from buds at pre‐ and post‐budburst identified two diterpene hydrocarbons, 9‐geranyl‐p‐cymene ( 1 ) and 9‐geranyl‐α‐terpinene ( 2a ), that were emitted in large amounts at the time of bud burst. Compound 1 significantly increased mean catch of males and total O. fagi (but not females) on sticky traps compared with unbaited controls. Y‐tube bioassays confirmed attraction of male O. fagi to bursting beech buds and compound 1 . Attraction of male O. fagi to 1 , emitted in large quantities from American beech, is likely adaptive because both oviposition and mating of O. fagi coincide with budburst. Our data suggest that traps baited with 1 may be useful for monitoring the spread of O. fagi in North America.     

Predicting the unexpected: using a qualitative model of a New Zealand dryland ecosystem to anticipate pest management outcomes

Pest management is expensive and there is often uncertainty about the benefits for the resources being protected. There can also be unintended consequences for other parts of the ecosystem, especially in complex food webs. In making decisions managers generally have to rely on qualitative information collected in a piecemeal fashion. A method to assist decision making is a qualitative modelling approach using fuzzy cognitive maps, a directed graphical model related to neural networks that can take account of interactions between pests and conservation assets in complex food webs. Using all available information on relationships between native and exotic resources and consumers, we generated hypotheses about potential consequences of single‐species and multi‐species pest control on the long‐term equilibrium abundances of other biotic components of an ecosystem. We applied the model to a dryland ecosystem in New Zealand because we had good information on its trophic structure, but the information on the strength of species interactions was imprecise. Our model suggested that pest control is unlikely to significantly boost native invertebrates and lizards in this ecosystem, suggesting that other forms of management may be required for these groups. Most of the pest control regimes tested resulted in greater abundances of at least one other pest species, which could potentially lead to other management problems. Some of the predictions were unexpected, such as more birds resulting from possum and mouse control. We also modelled the effects of an increase in invasive rabbits, which led to unexpected declines of stoats, weasels, mice and possums. These unexpected outcomes resulted from complex indirect pathways in the food web. Fuzzy cognitive maps allow rapid construction of prototype models of complex food webs using a wide range of data and expert opinion. Their utility lies in providing direction for future monitoring efforts and generating hypotheses that can be tested with field experiments.     

Can aerial herbicide application control Grey Willow (Salix cinerea L.) and stimulate native plant recovery in New Zealand wetlands?

Grey Willow (Salix cinerea L.) poses a significant threat to wetland ecosystems in New Zealand. To manage the ecological impacts and to control further spread, cost‐effective large‐scale control methods are needed. We investigated the response of Grey Willow and dominant wetland plant groups to the aerial boom‐spray application of glyphosate at 9 L/ha and triclopyr (amine) at 18 L/ha at three New Zealand wetlands. We found glyphosate substantially reduced the dominance of tall (>2 m) Grey Willow with commensurate increases in the dominance of most native plant groups. Triclopyr (amine) application resulted in poor Grey Willow control, was not associated with increased native plant group dominance, and some native plant groups declined where triclopyr (amine) was applied. We conclude that the aerial application of glyphosate is an effective large‐scale Grey Willow control tool and could be used to initiate the restoration of native plant communities in wetlands dominated by Grey Willow. But, evidence of Grey Willow recovery after control suggests that increases in native plant dominance will be reversed as Grey Willow re‐establish. Further research is needed to determine how to maintain and enhance native plant dominance after control, and to determine how to manage Grey Willow in fen areas where the Grey Willow canopy is discontinuous and nontarget herbicide impacts can occur. The aerial boom‐spray application of triclopyr (amine) for large‐scale Grey Willow control should be discontinued as it does not provide effective control and results in negative ecological outcomes.     

Selection of alpine grasslands over beech forest by stoats (

Predation by introduced stoats is now considered a major threat to the population viability of several New Zealand endemic bird species. Historically stoat research and management has focused on beech forests and little is known about the ecology of stoats in the alpine grasslands occurring above the natural altitudinal limit of beech forest. Several stoat control operations in beech forest valley floors in southern New Zealand assume that adjacent montane areas act as a barrier to stoat immigration. Stoats were live-trapped and radio-tracked in alpine grasslands above the Borland Burn, Fiordland National Park, during the summer and autumn of 2003 and 2004. Seventeen stoats were radio-collared and home ranges were estimated for 11 of them. These home ranges were used in a compositional analysis which showed that these stoats spent significantly more time in alpine grassland than in adjacent beech forest. Range cores calculated for six of these stoats were located high up in alpine grassland and contained very little beech forest. This means that montane areas that contain alpine grasslands are unlikely to be barriers to stoat immigration; rather they may be a source of dispersing stoats that reinvade control areas. Also, endemic animal species that inhabit alpine grasslands could be at risk from stoat predation.     

The effect of targeted high‐threat weed control on wet forest understorey vegetation in the Central Highlands region,Victoria

The effective control of highly invasive weeds in Australia is an important conservation management action. In this study, we monitored the outcome of herbicide control on high‐threat weeds in the wet forests of the Central Highlands of Victoria. Twenty‐two control (no weed control) and 32 treatment (weed control) plots were surveyed annually over 24 months. Initial results show that weed cover and frequency decreased substantially in response to weed control; however, it is too early to determine the response of native species. We recommend that herbicide control and the associated monitoring programme be continued, and depending on the outcomes, data should be used to develop a more integrated management strategy.     

Genetic population assignment reveals a long-distance incursion to an island by a stoat (Mustela erminea)

When new individuals from a pest species are detected after an eradication programme, it is important to determine if these individuals are survivors from the eradication attempt or reinvaders from another population, as this enables managers to adjust and improve the methodologies for future eradications and biosecurity. Rangitoto/Motutapu Islands in the Hauraki Gulf (New Zealand) had a multispecies mammalian pest eradication conducted in 2009. A year after this eradication a single stoat was trapped on the island. Using genetic population assignment we conclude that this individual was a reinvader, which probably swam a minimum distance of 3 km from the adjacent mainland. This swimming distance is greater than any previously known stoat incursions. Our results suggest that the original population on these islands was from natural dispersal rather than anthropogenic introduction and that it had some limited ongoing mixing with the mainland population. These findings highlight the invasion/reinvasion potential of stoats across large stretches of water, and will necessitate ongoing biosecurity indefinitely for these islands. The study also highlights the utility of genetic assignment techniques for assessing reinvasion, and emphasizes the need for pre-eradication genetic sampling of all pest species to enable such analyses to be carried out.     

Using genetics and Bayesian modelling to evaluate the eradication of stoats (

The New Zealand Department of Conservation recently (May 2008) began a programme to eradicate stoats (Mustela erminea) from Resolution Island (Fiordland, New Zealand) using kill traps. In conjunction with this eradication effort we have the following 3 objectives: (1) to measure the population abundance of stoats prior to trapping using hair tubes and forensic DNA methods; (2) optimise techniques for detecting individual stoats, in order to quantify the probability of stoat persistence given no detections after several months of trapping; and (3) use genetic analyses to identify the possible origins (mainland incursions or in situ breeding) of new stoats captured in a control zone. We present Bayesian modelling techniques used to determine the probability of stoat persistence on the island after the initial population reduction, when individual stoats are no longer captured in traps. We also provide details on an effective level of monitoring and trapping effort required to maintain a comfortable level of confidence that stoats no longer persist on the island. Improving these techniques adds to variety of valuable tools for management of invasive mammal species in a range of natural environments worldwide.     

The New Zealand Scincidae (Reptilia: Lacertilia); a taxonomic and zoogeographic study

Abstract

The mohua (or yellowhead, Mohoua ochrocephala) is an endangered hole‐nesting passerine which is now absent from >75% of its former range. This paper describes an 11 year monitoring programme, which was set up to survey 14 populations at 12 key sites throughout the range of the mohua, in order to document the pattern of population change and provide early warning of likely local extinctions. Between 1983 and 1993, one mohua population became extinct. Five of the 14 populations declined significantly, and three of these were on the verge of extinction by 1993. One population increased, and seven did not change significantly, although a declining trend was recorded at five of these. Six population crashes coincided with irruptions of stoats (Mustela erminea) following heavy beech (Nothofagus) seeding.     

An analysis of a recreational hunter's red deer tallies in the Tararua Ranges, North Island, New Zealand

Home range and diet of stoats inhabiting beech forest were examined by trapping and radio-tracking. Eleven stoats (6 female, 5 male) were fitted with radio-transmitters. Minimum home ranges of five females averaged 124 ± 21 ha and of four males 206 ± 73 ha. Range lengths of females averaged 2.3 ± 0.3 km and of males 4.0 ± 0.9 km. These differences were not statistically significant. Adult female stoats appeared to have mutually exclusive home ranges. Two females and one male had home ranges that were bisected by the Eglinton River. All three crossed the river regularly and could only have done so by swimming. Bird remains were found in 54% of stoat guts and scats examined, lagomorphs in 33%, and invertebrates in 34%. Australian brushtail possum remains were found in 11% of samples overall, but only in guts and scats from male stoats. A road through the study area affected the behaviour of stoats. Females avoided the road but males preferred it and were found scavenging road-kills, which may explain why they are more frequently found as road-kills themselves. In most years, New Zealand beech forest may be marginal habitat for stoats. No breeding was detected in the year of our study but there had been high productivity in the previous season. Stoats probably survive in this habitat because they are flexible in their diet and because their breeding biology allows them to respond rapidly to a sudden increase in food availability.     

Spatial synchrony in Drosophila suzukii population dynamics along elevational gradients

1. Spotted wing drosophila (SWD; Drosophila suzukii Matsumura, 1931) is a polyphagous invasive crop pest native of Southeast Asia able to attack a wide array of host plant species in both cultivated and natural habitats. SWD is now widespread in several mountain regions, but it is still unclear how the species moves to different elevations across the seasons, and how this depends on environmental conditions and food resources. 2. The temporal dynamics of several SWD populations were studied along elevational gradients in the Alps using a synchrony analysis. Twelve transects were selected, covering an overall elevational gradient of 2100 m. SWD abundance was monitored every 2 weeks during the growing season (from June to November 2015) when cultivated and wild hosts are potentially susceptible (i.e. fruits are ripe). 3. Spotted wing drosophila were widely distributed along all the tested elevations, revealing synchrony in population dynamics across ranges in elevation and geographic distance. Synchronised populations were observed at distances of up to 100 km at sites with similar temperatures. The high dispersal potential of the pest together with the seasonal variation in temperature are likely to be the dominant mechanisms causing the observed spatial synchrony. A factor that seemed to reduce synchrony is the large concentration of host plants (i.e. crop) in lowland agricultural landscapes. 4. The spatial synchrony in pest abundance at large spatial scale indicates that the risk of SWD outbreaks is highly dependent on drivers beyond the control of traditional field‐scale management. These findings could help in developing monitoring and predictive models of SWD population dynamics.     

Apolygus lucorum genome provides insights into omnivorousness and mesophyll feeding

Apolygus lucorum (Miridae) is an omnivorous pest that occurs worldwide and is notorious for the serious damage it causes to various crops and substantial economic losses. Although some studies have examined the biological characteristics of the mirid bug, no reference genome is available in Miridae, limiting in‐depth studies of this pest. Here, we present a chromosome‐scale reference genome of A. lucorum, the first sequenced Miridae species. The assembled genome size was 1.02 Gb with a contig N50 of 785 kb. With Hi‐C scaffolding, 1,016 Mb contig sequences were clustered, ordered and assembled into 17 large scaffolds with scaffold N50 length 68 Mb, each corresponding to a natural chromosome. Numerous transposable elements occur in this genome and contribute to the large genome size. Expansions of genes associated with omnivorousness and mesophyll feeding such as those related to digestion, chemosensory perception, and detoxification were observed in A. lucorum, suggesting that gene expansion contributed to its strong environmental adaptability and severe harm to crops. We clarified that a salivary enzyme polygalacturonase is unique in mirid bugs and has significantly expanded in A. lucorum, which may contribute to leaf damage from this pest. The reference genome of A. lucorum not only facilitates biological studies of Hemiptera as well as an understanding of the damage mechanism of mesophyll feeding, but also provides a basis on which to develop efficient control technologies for mirid bugs.     

Secondary poisoning of mustelids in a New Zealand Nothofagus forest

Eleven radio-tagged stoats ( Mustela erminea ) and one weasel ( M. nivalis ) died of secondary poisoning following Talon 20 P^TM (20 ppm brodifacoum) poisoning operations which killed mice ( Mus musculus ), ship rats ( Rattus rattus ) and probably brushtail possums ( Trichosurus vulpecula ) in a New Zealand beech ( Nothofagus ) forest. This poisoning method could be an especially useful way of restoring New Zealand native bird populations because it kills several predator species in one operation. Potential unwanted side-effects must be researched before its routine use. This research also demonstrates the potential hazards of second-generation anticoagulant rodenticides to conservation of rodent predators in Europe.     

Non-invasive methods for genotyping of stoats (

Stoats (Mustela erminea) are a significant pest in New Zealand. A critical aspect of their management is the ability to identify individuals in order to estimate abundance or to determine the origin of residual animals after control, particularly as the trap-shy nature of stoats reduces the utility of trapping to gain this information. We investigated non-invasive ?capture? methods as an alternative to live-trapping or removal methods for estimating stoat abundance. First we determined whether sufficient variability exists at six microsatellite DNA loci to reliably identify individuals in the potentially bottlenecked, introduced stoat populations of New Zealand. In December 2001 we conducted a 7-night pilot field experiment using a modified hair-tube design, where we obtained a total of 64 hair samples. Sufficient DNA was extracted from 3?6 hair follicles to genotype a total of 51 samples. DNA quality declined if samples were left in the field for several nights before being collected, and daily checks proved best for maximising the quality of DNA obtained, while minimising the risk of multiple ?captures? of stoats. Conclusions were that non-invasive molecular sampling is likely to be a viable technique for estimating population density of stoats in New Zealand beech forest but that additional variable loci are required.     

The use of poison eggs for the control of stoats

Abstract

Stoats (Mustela erminea) are an important predator of many forest bird species in New Zealand, and more effective methods for their control are being sought. Stoat control using Fenn traps has been shown to prevent predation on mohua (Mohoua ochrocephala), but this technique is labour‐intensive and costly to use for protection of large areas of habitat. We evaluated 1080 delivered in eggs as a poison for control of stoats. The lethal dose has been determined by captive and field trials, but attempts to implement a large‐scale control operation have given inconclusive results. To clarify the effectiveness of 1080 eggs as a control technique, we carried out further field trials with radio‐tagged stoats in the Makarora Valley. Twenty animals were monitored by radio tracking, and data loggers and video cameras recorded their visits to bait stations. The precise time an individual stoat ate a poison egg could be determined from data logger and video information, and its fate was followed. Sixteen of twenty stoats were killed by 1080 eggs, three died of other causes and one remained alive at the end of the trials.     

Forest bolsters bird abundance,pest control and coffee yield

Efforts to maximise crop yields are fuelling agricultural intensification, exacerbating the biodiversity crisis. Low‐intensity agricultural practices, however, may not sacrifice yields if they support biodiversity‐driven ecosystem services. We quantified the value native predators provide to farmers by consuming coffee's most damaging insect pest, the coffee berry borer beetle (Hypothenemus hampei). Our experiments in Costa Rica showed birds reduced infestation by ~ 50%, bats played a marginal role, and farmland forest cover increased pest removal. We identified borer‐consuming bird species by assaying faeces for borer DNA and found higher borer‐predator abundances on more forested plantations. Our coarse estimate is that forest patches doubled pest control over 230 km² by providing habitat for ~ 55 000 borer‐consuming birds. These pest‐control services prevented US$75–US$310 ha‐year⁻¹ in damage, a benefit per plantation on par with the average annual income of a Costa Rican citizen. Retaining forest and accounting for pest control demonstrates a win–win for biodiversity and coffee farmers.