ADDITIONAL SPECIMENS OF SUDAMERICID (GONDWANATHERIA) MAMMALS FROM THE EARLY PALEOCENE OF ARGENTINA

Abstract: The extinct, Cretaceous–Paleogene Gondwanatherians have previously been considered to be early xenarthrans, multituberculates and more recently Mammalia incertae sedis. However, the phylogenetic relationships of Gondwanatheria have yet to be resolved. In this paper, additional dental specimens of the gondwanatherian Sudamerica ameghinoi from the Early Paleocene Salamanca Formation of Argentina are described. These specimens provide additional information on Gondwanatheria affinities, sudamericid morphology and help support earlier hypotheses on Sudamerica dental formula and tooth categories. Sudamericid dental functional morphology and body mass estimates, based on measurements of isolated teeth, are inferred. Dental morphology such as hypsodonty, enamel microstructure and crown features do support a robust clade for Sudamericidae.     

Evolutionary analysis of the middle and inner ear of Late Jurassic multituberculates

We describe three previously unreported specimens of petrosal bones of paulchoffatiid multituberculate mammals, collected from strata of Late Jurassic age in the Guimarota lignite mine of Leiria, west-central Portugal. The new fossils allow correction, supplementation, and confirmation of anatomical details, thus refining knowledge of general adaptation in the ear region among Jurassic multituberculates. Virtually all observed characters in the paulchoffatiid otic region are primitive relative to homologous features seen among Late Cretaceous and younger representatives of the Multituberculata; we recognize few unique otic specializations in paulchoffatiids that would preclude ancestry to later multituberculates. The plesiomorphic nature of paulchoffatiid ear regions provides no evidence in support of the hypothesis of a special, sister-group relationship between multituberculates and Late Cretaceous/Cenozoic marsupials plus placentals. Used in isolation, objective evidence derived from paulchoffatiid ear regions is consistent with interpretation of multituberculate divergence from other mammals predating the stem to living monotremes and postdating the stem to extinct morganucodontids. More broadly based comparative studies among Mesozoic mammals, however, suggest that independent acquisition of similarly advanced mammalian features was a pervasive theme among evolutionary histories of early mammals, probably including multituberculates. Although the phylogenetic position of multituberculates relative to other mammalian groups has yet to be unequivocally resolved, we suggest that a very early divergence of the group remains a distinct possibility.     

Theropod dinosaur teeth from the lowermost Cretaceous Rabekke Formation on Bornholm, Denmark

The dinosaur fauna of the palynologically dated lower Berriasian Skyttegård Member of the Rabekke Formation on the Baltic island of Bornholm, Denmark, is represented by isolated tooth crowns. The assemblage is restricted to small maniraptoran theropods, assigned to the Dromaeosauridae incertae sedis and Maniraptora incertae sedis. The dromaeosaurid teeth are characterized by their labiolingually compressed and distally curved crowns that are each equipped with a lingually flexed mesial carina and a distinctly denticulated distal cutting edge. A morphologically aberrant tooth crown (referred to as Maniraptora incertae sedis) has triangular denticles of uneven width, a feature occasionally found in Upper Cretaceous hesperornithiform toothed diving birds, but also in premaxillary teeth of the velociraptorine Nuthetes from the Lower Cretaceous of England.     

Re-thinking the classification of corticioid fungi

Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi are distributed among all major clades within Agaricomycetes. There is a relative consensus concerning the higher order classification of basidiomycetes down to order. This paper presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative families were identified from published phylogenies and preliminary analyses of unpublished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phylogenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly supported and three unsupported clades were identified. These clades are treated as families in a Linnean hierarchical classification and each family is briefly described. Three additional families not covered by the phylogenetic analyses are also included in the classification. All accepted corticioid genera are either referred to one of the families or listed as incertae sedis.     

The phylogenetic relationships of the Andean swamp rat genus <Emphasis Type="Italic">Neotomys</Emphasis> (Rodentia,Cricetidae, Sigmodontinae) based on mitochondrial and nuclear markers

The aim of this study was to assess the phylogenetic position of the South American cricetid genus Neotomys using two molecular markers: one nuclear (Irbp) and one mitochondrial (mt-cyb). This genus is currently considered as incertae sedis in the Sigmodontinae radiation. The phylogenetic relationships were estimated using three approaches: Bayesian inference, maximum likelihood and parsimony. We found the genus Neotomys closely related to the genera Euneomys and Irenomys, which are also considered incertae sedis. Our results suggest a common origin for this group of genera; this fact should be reflected in the taxonomy as a supra generic group with a tribal level. However, further and deeper analysis of both molecular and morphological data are needed to diagnose and formalize the proposed tribe. The relationships of this clade to the other members of Sigmodontinae were not clear as assessed by these data sets. The three genera are distributed around the Central and Southern Andes in South America evidencing that the Andes have played an important role in the diversification of several tribes of sigmodontine rodents.     

First mammal species identified from the Upper Cretaceous of the Rusca Montană Basin (Transylvania,Romania)

Multituberculate mammals are scarce in the Late Cretaceous of Europe, being recorded exclusively from the Maastrichtian terrestrial deposits of the Ha?eg and Transylvanian basins, in Romania. Moreover, they all belong to the endemic and primitive cimolodontan family Kogaionidae. Here, we report multituberculate teeth originating from the Maastrichtian fluviatile sediments of the Rusca Montan? Basin (Occidental Carpathians, Poiana Rusc? Mountains). This is the westernmost occurrence of these Cretaceous mammals in Romania. These teeth are assigned to Barbatodon oardaensis, the smallest Cretaceous kogaionid species. This study presents the first occurrence of this species outside the Metaliferi sedimentary area (southwestern Transylvania, Romania). The distribution of Romanian Maastrichtian kogaionids is also discussed.     

A New Marsupial from the Early Eocene Tingamarra Local Fauna of Murgon, Southeastern Queensland: A Prototypical Australian Marsupial?

Djarthia murgonensis, a new genus and species of marsupial from the early Eocene Tingamarra Local Fauna of Murgon in southeastern Queensland, is described on the basis of dental material. The combination of marsupial synapomorphies and symplesiomorphies present in D. murgonensis suggests phylogenetic placement within either Didelphidae or Australidelphia. Tarsal morphology, fundamental to the concepts of Ameridelphia and Australidelphia respectively, is not yet known for this taxon. Consequently, it cannot be assigned to either clade with confidence. If this taxon is australidelphian, it constitutes support for the hypothesis that the common ancestor of the Australian marsupial radiation was didelphoid-like in dental features. Some previous authors have contended that marsupial faunas of South America and Australia are manifestly distinct, excepting for the australidelphian affinity of South American microbiotheres. However, because tarsal anatomy is unknown in some generalized Australian fossil taxa, including D. murgonensis, and character analysis reveals that no synapomorphies of the dentition unequivocally define either Ameridelphia or Australidelphia to the exclusion of the other, we consider this interpretation to be premature. In short, available evidence neither supports nor refutes the argument of distinct South American and Australasian marsupial faunas. A further ramification is the need to reconsider the phylogenetic position of Ankotarinja tirarensis and Keeuna woodburnei. These central Australian fossil taxa might be referred to either Australidelphia or Ameridelphia, and it is recommended that both be treated as Marsupialia incertae sedis until further material comes to light.     

Prism Size in Tooth Enamel of Some Late Cretaceous Mammals and Its Value in Multituberculate Taxonomy

Teeth from specified members of the two suborders of Late Cretaceous Multituberculata and two Late Cretaceous therians were studied. The enamel was prismatic on all teeth. In the therian representatives and the representatives of the suborder Ptilodontoidea of the Multituberculata, the prism diameters and densities per unit area were similar to those of recent mammals. In the representatives of the suborder Taeniolabidoidea the prisms were very large and their density per unit area was 5 to 8 times lower than in recent mammals. It is suggested that gigantoprismatic enamel is a characteristic of Taeniolabidoidea and could be used as a taxonomic criterion in multituberculate systematics.     

Multilocus analysis reveals diversity in the genus Tissierella: Description of Tissierella carlieri sp. nov. in the new class Tissierellia classis nov.

The genus Tissierella and its relatives Tepidimicrobium, Soehngenia and Sporanaerobacter comprise anaerobic Gram-positive bacilli classified along with Gram-positive cocci in a family with controversial placement designated as incertae sedis XI, in the phylum Firmicutes. We performed a top-down reappraisal of the taxonomy from the phylum to the species level within the genus Tissierella. Reconstruction of high-rank 16S rRNA gene-based phylogenies and their interpretation in a taxonomic purpose allowed defining Tissierellia classis nov. within the phylum Firmicutes while the frames of Tissierellales ord. nov. and Tissierellaceae fam. nov. have to be further strengthened. For species delineation in the genus Tissierella, we studied a population of clinical strains. Beside Tissierella praeacuta, a sub-population of five strains formed a clade in multilocus phylogenies (16S rRNA, cpn60, tpi, recA and spo0A genes). Data such as 16S rRNA gene similarity level, population structure, chromosome organization and murein type indicated that this clade corresponded to a novel species for which the name Tissierella carlieri sp. nov. is proposed, with type strain LBN 295^T = AIP 268.01^T = DSM 23816^T = CCUG 60010^T. Such an approach, associating a phylogenetic reappraisal of high-level taxonomic ranks with weak taxonomic structure and a population study for genus and species delineation is needed to strengthen the taxonomic frame of incertae sedis groups in the phylum Firmicutes.     

A Systematic Study on Tooth Enamel Microstructures of Lambdopsalis bulla (Multituberculate,Mammalia) - Implications for Multituberculate Biology and Phylogeny

Tooth enamel microstructure is a reliable and widely used indicator of dietary interpretations and data for phylogenetic reconstruction, if all levels of variability are investigated. It is usually difficult to have a thorough examination at all levels of enamel structures for any mammals, especially for the early mammals, which are commonly represented by sparse specimens. Because of the random preservation of specimens, enamel microstructures from different teeth in various species are often compared. There are few examples that convincingly show intraspecific variation of tooth enamel microstructure in full dentition of a species, including multituberculates. Here we present a systematic survey of tooth enamel microstructures of Lambdopsalis bulla, a taeniolabidoid multituberculate from the Late Paleocene Nomogen Formation, Inner Mongolia. We examined enamel structures at all hierarchical levels. The samples are treated differently in section orientations and acid preparation and examined using different imaging methods. The results show that, except for preparation artifacts, the crystallites, enamel types, Schmelzmuster and dentition types of Lambdopsalis are relatively consistent in all permanent teeth, but the prism type, including the prism shape, size and density, may vary in different portions of a single tooth or among different teeth of an individual animal. The most common Schmelzmuster of the permanent teeth in Lambdopsalis is a combination of radial enamel in the inner and middle layers, aprismatic enamel in the outer layer, and irregular decussations in tooth crown area with great curvature. The prism seam is another comparably stable characteristic that may be a useful feature for multituberculate taxonomy. The systematic documentation of enamel structures in Lambdopsalis may be generalized for the enamel microstructure study, and thus for taxonomy and phylogenetic reconstruction, of multituberculates and even informative for the enamel study of other early mammals.     

Relationships among major lineages of characid fishes (Teleostei: Ostariophysi: Characiformes), based on molecular sequence data

The family Characidae is a group of freshwater bony fishes that exhibits high species-level diversity and whose members inhabit parts of Texas, Mexico, and Central and South America. Thus far, morphological data have been of limited use in discerning relationships among subfamilies and incertae sedis genera of the family Characidae. In this study, DNA sequence data from GenBank were combined with new sequences for analyses under Bayesian and parsimony schemes. Sequences fell into four gene partitions, with three genes in the mitochondrial subset (12S, 16S, COI genes) and one gene in the nuclear subset (RAG2 gene). Inferred Bayesian and parsimony-based phylogenies reject the monophyly of certain groups (e.g., Astyanax, Hyphessobrycon, and Bryconamericus), do not reject the monophyly of others (e.g., Cheirodontinae and “clade A” of previous authors), and present new sister-group hypotheses (e.g., Brittanichthys sister to Paracheirodon). Sister to clade A is a lineage referred to herein as “clade B” which includes Exodon and exemplars from Cheirodontinae (the most basal lineage within clade B), Aphyocharacinae, Tetragonopterinae, and Characinae (excluding Gnathocharax). “Clade C” is sister to A + B and contains representatives of large incertae sedis genera (e.g., Hyphessobrycon, Hemigrammus), as well as members of Stethaprioninae. Unless certain other subfamilial names are to be disregarded, the use of Tetragonopterinae should continue to be restricted to species of Tetragonopterus because other genera previously referred to this subfamily grouped in clades A or C, quite distant from Tetragonopterus.     

Phylogeny and Systematics of Multituberculate Mammals

We present a synopsis of high-rank multituberculate systematicsand a manually generated cladogram illustrating multituberculate interrelationships. We divide the Multituberculata into the paraphyletic suborder 'Plagiaulacida', an apparently monophyletic suborder Cimolodonta, and one family incertae sedis. Within 'Plagiaulacida' we recognise three informal lines: paulchoffatiid (three families), plagiaulacid (three families) and allodontid (two families and the genus Glirodon). The Cimolodonta are divided into an informal Paracimexomys group; three superfamilies: Ptilodontoidea, Djadochtatherioidea (new), and Taeniolabidoidea (restricted to Taeniolabididae); and five families (superfamily incertae sedis): Eucosmodontidae, Microcosmodontidae, Cimolodontidae, Boffiidae, and Kogaionidae; and some genera incertae sedis. New characters used in our analysis are (1) a tendency of molar cusps to coalesce; and (2) ornamentation of grooves, pits, and ridges on the molars. We argue that the Ptilodontoidea, and less certainly also the Cimolodontidae and Boffiidae, might have originated from amongthe plagiaulacid line, a possible intermediate link being the Paracimexomys group. The remaining Cimolodonta might have originated from unknown members of the Paracimexomys group with separated molar cusps and smooth enamel. The origin of two types of prismatic enamel and a relationship between them are stumbling blocks in understanding the origin of the Cimolodonta; we conclude that microprismatic enamel made its appearance only once. Revised diagnoses of high-rank multituberculate taxa, including lists of all known genera, are given.     

Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes)

The Australo-Papuan family Petroicidae (Aves: Passeriformes) has been the focus of much systematic debate about its relationships with other passerine families, as well as relationships within the family. Mostly conservative morphology within the group limits the effectiveness of traditional taxonomic analyses and has contributed to ongoing systematic debate. To assess relationships within the family, we sampled 47 individuals from 26 species, representing the majority of genera and species, for four loci: 528 base pairs (bp) of C-myc, 501 bp of BA20454 and 336 bp of BA23989 from nuclear DNA and 1005 bp of the mitochondrial ND2 gene. There was consensus between individual loci and overall support for major lineages was strong. Partitioned Bayesian analyses of all four loci produced a fully resolved and very well-supported phylogeny that addresses many of the previous systematic debates in this group. The Eopsaltriinae as construed is monophyletic with the exception of Eopsaltria flaviventris, which is nested within Microeca as an unremarkable member of that genus. This relationship is corroborated by morphology and egg color and pattern. Petroicinae as currently construed was not monophyletic and comprised two lineages that are paraphyletic with respect to each other. The third subfamily, Drymodinae, remains incertae sedis. The mangrove robin, Peneonanthe pulverulenta, of tropical Australia and New Guinea is nested within a clade that also contained the sampled species of Peneothello and Melanodryas, a novel relationship. Preliminary biogeographic and divergence time estimates from these results are discussed and a new subfamily arrangement proposed.     

Reorganising the order Bacillales through phylogenomics

Bacterial classification at higher taxonomic ranks such as the order and family levels is currently reliant on phylogenetic analysis of 16S rRNA and the presence of shared phenotypic characteristics. However, these may not be reflective of the true genotypic and phenotypic relationships of taxa. This is evident in the order Bacillales, members of which are defined as aerobic, spore-forming and rod-shaped bacteria. However, some taxa are anaerobic, asporogenic and coccoid. 16S rRNA gene phylogeny is also unable to elucidate the taxonomic positions of several families incertae sedis within this order. Whole genome-based phylogenetic approaches may provide a more accurate means to resolve higher taxonomic levels. A suite of phylogenomic approaches were applied to re-evaluate the taxonomy of 80 representative taxa of eight families (and six family incertae sedis taxa) within the order Bacillales. This showed several anomalies in the current family and order level classifications including the existence of four Bacillaceae and two Paenibacillaceae “family” clades. Furthermore, the families Staphylococcaceae and Listeriaceae belong to the sister order Lactobacillales. Finally, we propose a consensus phylogenomic approach which may diminish algorithmic biases associated with single approaches and facilitate more accurate classification of a broad range of taxa at the higher taxonomic levels.     

A higher-level phylogenetic classification of the Fungi

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotina. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of ‘basal’ Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella.     

New Remains of the Multituberculate Mammal <Emphasis Type="Italic">Barbatodon</Emphasis> from the Upper Cretaceous of the Hațeg Basin (Romania)

The so-called “Ha?eg Island” (Transylvania, Romania) is well known for its rich and peculiar Late Cretaceous vertebrate assemblages, including dwarf dinosaurs, first reported at the end of the 19th century. Besides dinosaurs, other important members of the “Ha?eg Island” terrestrial ecosystems were the multituberculate mammals. Late Cretaceous (Maastrichtian) multituberculates are extremely rare in Europe, being known exclusively from the “Ha?eg Island.” Two genera are reported from this area: Kogaionon, with the single species K. ungureanui, and Barbatodon, with two species: B. transylvanicus and B. oardaensis. Both genera belong to the European endemic family Kogaionidae. We report herein new remains of B. transylvanicus from the Maastrichtian locality of Pui (Hunedoara District) in the Ha?eg Basin, including the most complete dentaries found to date with complete cheek teeth rows. Intraspecific variability of this species in dentary shape, tooth morphology, and size difference is highlighted.     

虔州豫俊兽(Yubaatarqianzhouensissp.nov.):江西赣州盆地首例晚白垩世哺乳动物化石*

本文报道了产自江西省赣州市上白垩统赣县河口组的一件多瘤齿兽类标本, 这是江西省报道的首例中生代哺乳动物化石。此标本头骨后部横向扩展, 额骨较小, 后端尖并构成眼眶的内侧边缘, M1具三列齿尖, 系统发育分析支持其归入纹齿兽超科。与河南晚白垩世的中原豫俊兽形态较为相似, 但是两者间也存在一些明显的区别, 因此建立一个豫俊兽属新种——虔州豫俊兽(Yubaatar qianzhouensis sp. nov.), 鉴定特征为: m1齿尖式为7︰6; M2齿尖式为1︰3︰3; m1颊侧后部存在一道小脊; 虔州豫俊兽m2和m1的长度比例小于中原豫俊兽; 冠状突呈楔状, 末端尖。虔州豫俊兽的发现不仅扩展了晚白垩世多瘤齿兽类在东亚地区的地理分布和物种多样性, 并且也扩展了中生代哺乳动物的地理分布。