An Efficient Method for the Synthesis of [4–15N]Cytidine, 2′-Deoxy[4–15N]Cytidine, [6–15N]adenosine,and 2′-Deoxy [6–15N]adenosine Derivatives

Abstract

Nucleophilic substitution reactions of 4-azolyl-1 β-P-D-ribofuranosylpyrimidin-2(1H)-one and 6-azolyl-9-β-D-ribofuranosyl-9H-purine derivatives, which were converted from uridine and inosine, with [¹⁵N]phthalimide in the presence of triethylamine or DBU gave N ⁴-phthaloyl[4-¹⁵N]cytidine and N ⁶-phthaloyl[6-¹⁵N]- adenosine derivatives, respectively, in high yields. Similar reactions of those azolyl derivatives with succinimide afforded N ⁴-succinylcytidine and N ⁶-succinyladenosine derivatives in high yields. The corresponding 2′-deoxyribonucleosides were also synthesized efficiently through the same procedure.

     

Influence of mycorrhizal associations on foliar δ15N values of legume and non-legume shrubs and trees in the fynbos of South Africa: Implications for estimating N2 fixation using the 15N natural abundance method

In this study, we examined the use of the ¹⁵N natural abundance method to quantify the percentage N derived from fixation of atmospheric N₂ in honeybush (Cyclopia spp.) shrubs and trees in the fynbos, South Africa. Non-fixing shrubs and trees of similar phenology to the Cyclopia species were chosen as reference plants. These reference plants were selected to cover a range of mycorrhizal associations (ericoid mycorrhizal, arbuscular mycorrhizal and non-mycorrhizal). Isotopic analysis revealed a wide range of foliar ¹⁵N values for the reference plants, including many very negative values. The marked differences in ¹⁵N values were defined by the mycorrhizal status of the reference plant species, with the ericoid and arbuscular mycorrhizal plants showing lower foliar ¹⁵N values relative to their non-mycorrhizal counterparts. In contrast, the ¹⁵N values of the N₂-fixing Cyclopia species were uniformly clustered around zero, from –0.11 to –1.43. These findings are consistent with the observation that mycorrhizal fungi discriminate against the heavier ¹⁵N isotope during transfer of N from the fungus to the host plant, leaving the latter depleted in ¹⁵N (i.e. with a more negative ¹⁵N value). However, a major assumption of the ¹⁵N natural abundance method for estimating N₂ fixation is that both legume and reference plant should have the same level of fractionation associated with N uptake. But, because mycorrhizal associations may strongly affect the level of fractionation during N uptake and transfer, the test legume should belong to the same mycorrhizal group as the chosen reference plant species. As shown in this study, if the mycorrhizal status of the legume and the reference plant differs, or cannot be assessed, then the ¹⁵N natural abundance technique cannot be used to quantitatively estimate N₂ fixation.     

C和δ15N)对比

对细叶小羽藓(Haplocladium microphyllum)新老组织及其根际土壤的碳氮含量和同位素组成进行了分析,探讨了苔藓衰老过程控制元素和同位 素变化的机制以及苔藓对土壤的贡献。同种组织碳氮含量之间的相关性反映了苔藓固碳能力和氮需求的相互联系。新生组织碳氮含量明显高于 衰老组织且存在相关性,反映了苔藓衰老过程体内碳氮物质向新生组织迁移的生理特征。两种组织之间同位素组成(δ¹³C和δ¹⁵N)没有明显差 异,说明组织间的物质迁移没有产生明显的同位素分馏,其原因可能在于细叶小羽藓形态结构简单,体内物质迁移对碳氮同位素组成的影响较 小。相反,苔藓组织与根际土壤之间的有机碳/ 氮信息没有相关性,这可能与苔藓植物长期滞留营养物质、缓慢的分解和成土速度有关,反映了 该研究区苔藓层对土壤碳氮累积的贡献较小。     

δ15N of forest soil and understorey vegetation reflect the former agricultural land use

Since the middle of the 19th century, the area covered by forests in France has doubled. These new forests grow on previous agricultural lands. We have studied the influence of this agricultural history on the ¹⁵N abundance of present-day forests planted on farmlands in the Vosges mountains (north-eastern France) between 1898 and 1930. Different types of land use were identified from old cadastres (1814–1836) of 16 farms. Ancient forests adjacent to farmlands were used as controls. Former pastures, meadows, croplands, gardens and ancient forests were compared for soil δ¹⁵N (fraction <50 μm and total soil), C/N, P and N content and fern (Dryopteris carthusiana) δ¹⁵N. The mean δ¹⁵N of soil increased in the order ancient forests (+0.0‰)<pastures (+1.4‰)<croplands (+1.6‰)<meadows (+2.5‰)<gardens (+3.8‰). This increase in soil δ¹⁵N with the intensity of former land use was related to the former input of ¹⁵N-enriched manure, and to an activation of soil nitrification leading to ¹⁵N-depleted nitrate export on previously manured parcels. Fern δ¹⁵N increased in the same order as soil δ¹⁵N in relation to past land use. The mean δ¹⁵N of fern in ancient forests (–4.4‰) and former pastures (–3.4‰) was 5‰ lower than soil δ¹⁵N and the two variables were strongly correlated. The δ¹⁵N of fern in formerly manured parcels varied little (cropland: –2.7‰, meadows: –2.6‰ and gardens: –2.2‰) and independently of soil δ¹⁵N, suggesting that the soil sources of fern N differed between unmanured and manured parcels. Understorey plant δ¹⁵N and soil δ¹⁵N appear to be excellent tracers of previous land use in forests, and could be used in historical studies. The persistence of high isotopic ratios in previously manured parcels, almost a century after afforestation, suggests a long-term influence of former land use on the N cycle in forest soils. Received: 22 January 1999 / Accepted: 22 July 1999     

Is the high 15N natural abundance of trees in N-loaded forests caused by an internal ecosystem N isotope redistribution or a change in the ecosystem N isotope mass balance?

High δ¹⁵N of tree foliage in forests subject to high N supply has been attributed to ¹⁵N enrichment of plant available soil N pools after losses of N through processes involving N isotope fractionation (ammonia volatilization, nitrification followed by leaching and denitrification, and denitrification in itself). However, in a long-term experiment with high annual additions of NH₄NO₃, we found no change in the weighted average δ¹⁵N of the soil, but attributed the high δ¹⁵N of trees to loss of ectomycorrhizal fungi and their function in tree N uptake, which involves redistribution of N isotopes in the ecosystem (Högberg et al. New Phytol 189:515–525, 2011), rather than a loss of isotopically light N. Here, we compare the effects of additions of urea and NH₄NO₃ on the δ¹⁵N of trees and the soil profile, because we have previously found higher δ¹⁵N in tree foliage in trees in the urea plots. Doing this, we found no differences between the NH₄NO₃ and urea treatments in the concentration of N in the foliage, or the amounts of N in the organic mor-layer of the soil. However, the foliage of trees receiving the highest N loads in the urea treatment were more enriched in ¹⁵N than the corresponding NH₄NO₃ plots, and, importantly, the weighted average δ¹⁵N of the soil showed that N losses had been associated with fractionation against ¹⁵N in the urea plots. Thus, our results in combination with those of Högberg et al. (New Phytol 189:515–525, 2011) show that high δ¹⁵N of the vegetation after high N load may be caused by both an internal redistribution of the N isotopes (as a result of change of the function of ectomycorrhiza) and by losses of isotopically light N through processes fractionating against ¹⁵N (in case of urea ammonia volatilization, nitrification followed by leaching and denitrification).     

Why and how to estimate the cost of symbiotic N2 fixation? A progressive approach based on the use of14C and15N isotopes

The process of symbiotic nitrogen fixation, though of obvious advantage to legumes in situations in which nitrogen is limiting, results in substantial penalty to the host plant in terms of cost of maintenance, synthesis and nitrogen reduction. Accurate estimates of costs are difficult to obtain because of the lack of simple methods to measure N₂ fixation and associated energy consumption. In relation to these difficulties, a multiple-step approach involving isotopes (¹⁴CO₂–¹⁵N₂) methodologies is described.The estimation of net respiratory cost associated with the N₂ reduction activity in near-natural conditions was achieved using simultaneous¹⁴CO₂ and¹⁵N₂ labelling. It gives a minimum value of 2.5 mg C/mg N fixed. This value was corrected by the estimation of the amount of carbon saved through the process of CO₂ fixation by the PEP carboxylase of the nodules, using¹⁴CO₂ in the soil atmosphere. This gives a real respiratory cost of 4 mg C/mg N fixed.     

Measurements of nitrogen fixation in fababean at different N fertilizer rates using the 15N isotope dilution and ‘A-value’ methods

The ¹⁵N isotope dilution and A-value methods were used to measure biological nitrogen (N₂) fixation in field grown fababean (Vicia faba L.), over a 2-year period. Four N rates, 20, 100, 200 and 400 kg N ha^–1 were examined. The two isotope methods gave similar values of % N derived from the atmosphere (%Ndfa). With 20 kg N ha^–1, %Ndfa in fababean was about 85% in both years. Increasing the N rate to 100 kg N ha^–1 decreased N₂ fixation slightly to 75%. Further reductions in N₂ fixed to 60 and 43% occurred where 200 and 400 kg N ha^–1 were applied, respectively. Thus even higher rates of N than normally applied in farming practice could not completely suppress N₂ fixation in fababean.We also devised one equation for both the isotope dilution and A-value approaches, thereby (i) avoiding the need for different calculations for the ¹⁵N isotope methods, and (ii) showing once again that the isotope dilution and A-value methods are mathematically and conceptually identical.     

Anthropogenic N deposition and the fate of 15NO 3 − in a northern hardwood ecosystem

Human activity has substantially increased atmospheric NO ₃ ^– deposition in many regions of the Earth, which could lead to the N saturation of terrestrial ecosystems. Sugar maple (Acer saccharum Marsh.) dominated northern hardwood forests in the Upper Great Lakes region may be particularly sensitive to chronic NO ₃ ^– deposition, because relatively moderate experimental increases (three times ambient) have resulted in substantial N leaching over a relatively short duration (5–7 years). Although microbial immobilization is an initial sink (i.e., within 1–2 days) for anthropogenic NO ₃ ^– in this ecosystem, we have an incomplete understanding of the processes controlling the longer-term (i.e., after 1 year) retention and flow of anthropogenic N. Our objectives were to determine: (i) whether chronic NO ₃ ^– additions have altered the N content of major ecosystem pools, and (ii) the longer-term fate of ¹⁵NO ₃ ^– in plots receiving chronic NO ₃ ^– addition. We addressed these objectives using a field experiment in which three northern hardwood plots receive ambient atmospheric N deposition (ca. 0.9 g N m^–2 year^–1) and three plots which receive ambient plus experimental N deposition (3.0 g NO₃ ^–-N m^–2 year^–1). Chronic NO ₃ ^– deposition significantly increased the N concentration and content (g N/m²) of canopy leaves, which contained 72% more N than the control treatment. However, chronic NO ₃ ^– deposition did not significantly alter the biomass, N concentration or N content of any other ecosystem pool. The largest portion of ¹⁵N recovered after 1 year occurred in overstory leaves and branches (10%). In contrast, we recovered virtually none of the isotope in soil organic matter (SOM), indicating that SOM was not a sink for anthropogenic NO ₃ ^– over a 1 year duration. Our results indicate that anthropogenic NO ₃ ^– initially assimilated by the microbial community is released into soil solution where it is subsequently taken up by overstory trees and allocated to the canopy. Anthropogenic N appears to be incorporated into SOM only after it is returned to the forest floor and soil via leaf litter fall. Short- and long-term isotope tracing studies provided very different results and illustrate the need to understand the physiological processes controlling the flow of anthropogenic N in terrestrial ecosystems and the specific time steps over which they operate.     

微生物发酵合成L—缬氨酸—15N

采用含有稳定同位素１５Ｎ－硫铵为主要氮源的专用发酵培养液配方和相应的工艺条件,在国内首次微生物直接发酵研制成Ｌ－缬氨酸－１５Ｎ高丰度精制产品。产品１５Ｎ丰度９７．６８％,反比原料１５Ｎ－硫铵丰度下降０．５３％,Ｌ－缬氨酸－１５Ｎ产酸率最高达４％以上（未校正）。每克１５Ｎ－硫可得到１克以上的Ｌ－缬氨酸－１５Ｎ（分析值）提取精制收率平均为８０－９０％（单程）,最高达到９５％以上（二次提取）。实际每克１     

1H, 13C, and 15N chemical shift assignments for the Eps15-EH2-stonin 2 complex

EH domains are protein–protein interaction domains that function in vesicular trafficking and endocytosis. Here, we report the NMR spectral assignments of the high-affinity complex between the second EH domain of Eps15 and a stonin 2 peptide—providing the basis for the characterization of a two-site binding mode.     

Simultaneous acquisition of 13Cα–15N and 1H–15N–15N sequential correlations in proteins: application of dual receivers in 3D HNN

We describe here, adaptation of the HNN pulse sequence for multiple nuclei detection using two independent receivers by utilizing the detectable ¹³C^α transverse magnetization which was otherwise dephased out in the conventional HNN experiment. It enables acquisition of 2D ¹³C^α–¹⁵N sequential correlations along with the standard 3D ¹⁵N–¹⁵N–¹H correlations, which provides directionality to sequential walk in HNN, on one hand, and enhances the speed of backbone assignment, on the other. We foresee that the implementation of dual direct detection opens up new avenues for a wide variety of modifications that would further enhance the value and applications of the experiment, and enable derivation of hitherto impossible information.     

Efficient Synthesis of [2-15N]Guanosine and 2′-Deoxy[2′-15N]Guanosine Derivatives Using N-(tert-Butyldimethylsilyl)[15N]Phthalimide as a 15N-Labeling Reagent

Nucleophilic aromatic substitution of 9-(2,3,5-tri-O-acetyl-β-D-ribofuranosyl)-6-chloro-2-fluoro-9 H-purine with N-(tert-butyldimethylsilyl)[ ¹⁵ N]phthalimide in the presence of a catalytic amount of CsF at room temperature in DMF efficiently afforded the 6-chloro-2-[ ¹⁵ N]phthalimidopurine derivative, which was subsequently converted to the [2-¹⁵N]guanosine derivative was also efficiently synthesized through a similar procedure.     

Long-term changes of the δ15N natural abundance of plants and soil in a temperate grassland

Tracing back the N use efficiency of long-term fertilizer trials is important for future management recommendations. Here we tested the changes in natural N-isotope composition as an indicator for N- management within a long-term fertilization lysimeter experiment in a low mountain range pasture ecosystem at Rengen (Eifel Mountains), Germany. Cattle slurry (δ¹⁵N?=?8.9?±?0.5‰) and mineral fertilizers (calcium ammonium nitrate; δ¹⁵N?=??1.0?±?0.2‰) were applied at a rate between 0 and 480 kg N ha^?1?yr^?1 throughout 20 years from 1985 onwards. In 2006, samples were taken from different grass species, coarse and fine particulate soil organic matter, bulk soil and leachates. Total soil N content hardly changed during fertilization experiment. As also N leaching has been small within the stagnant water regime, most N was lost through the gaseous phase beside plant uptake and cutting. Unlike N uptake by plants, the process of N volatilization resulted in strong discrimination against the ¹⁵N isotope. As a consequence, the δ¹⁵N values of top soil samples increased from 1.8?±?0.4‰ to 6.0?±?0.4‰ and that of the plants from ?1.2?±?1.3‰ to 4.8?±?1.2‰ with increasing N fertilizer rate. Samples receiving organic fertilizer were most enriched in δ¹⁵N. The results suggest that parts of the fertilizer N signal was preserved in soils and even discovered in soil organic matter pools with slow N turnover. However, a ¹⁵N/¹⁴N isotope fractionation of up to 1.5‰ added to the δ¹⁵N values recovered in soils and plants, rendering the increase in δ¹⁵N value a powerful indicator to long-term inefficient N usage and past N management in the terrestrial environment.     

Can the 15N Dilution Technique be used to Study N2 Fixation in Tropical Tree Symbioses as Affected by Water Deficit?

Three methods were used to study N₂ fixation and effects ofwater deficit on N₂ fixation: C₂H₂ reduction assay (ARA), ¹⁵Ndilution technique and accumulated N content. In addition, ¹⁵Ndilution was calculated both in a traditional way and in a modifiedway, which takes into consideration N and ¹⁵N content for theplants before the experiment started. The three methods wereapplied on the following Rhizobium-symbioses: Acacia albidaDel (Faidherbia albida (Del) A. Chev.) and Leucaena leucocephala(Lam) de Wit., and the Frankia-symbiosis Casuarina equisetifoliaL. The plants wereabout 4-months-old when they were harvested. Nitrogen derived from N₂ fixation in control plants of Acaciaalbida was 54·2 mg as measured with ARA, while it was28·5 mg as measured with the ¹⁵N dilution technique,compared to 30·7 mg calculated as accumulated N. In comparison,L. leucocephala fixed 41·6 mg N (ARA), 53·5 mgN(15N dilution technique) and 56·3 mg N (accumulatedN). The Frankia-symbiosis had fixed 27·4 mg N as measuredby ARA, 8·1 mg N as measured by ¹⁵N dilution techniqueand 12·3 mg N as accumulated N. There were no differencesbetween the estimates based ontraditional and modified waysof calculating ¹⁵N dilution. The immediate effect of water deficit treatment on N₂ fixationwas continuously measured inall species with ARA, which startedto decrease approximately 10 d after the initiation of the treatment,and declined to less than 5% of the initial level after 21–28d. The decrease in the amount of N derived from N₂ fixation wasstudied in L. leucocephala during the period of treatment. Therewas a 26% decrease in amount of N derived from N₂ fixation asresult of water deficit (as measured with ARA), while the decreasewas 23% when measured withboth the ¹⁵N dilution method and asaccumulated N. The three different methods for measuring N₂ fixation and effectsof water deficit on N₂ fixation are discussed. Key words: Acacia albida, ARA, Casuarina equisetifolia, Leucaena leucocephala, ¹⁵N dilution, N₂N fixation, water deficit     

A break in the nitrogen cycle in aridlands? Evidence from δp15N of soils

We examined the content and isotopic composition of nitrogen within soils of a juniper woodland and found that a cryptobiotic crust composed of cyanobacteria, lichens, and mosses was the predominant source of nitrogen for this ecosystem. Disturbance of the crust has resulted in considerable spatial variability in soil nitrogen content and isotopic composition; intercanopy soils were significantly depleted in nitrogen and had greater abundance of ¹⁵N compared to intra-canopy soils. Variations in the ¹⁵N/¹⁴N ratio for inter- and intra-canopy locations followed similar Rayleigh distillation curves, indicating that the greater ¹⁵N/¹⁴N ratios for inter-canopy soils were due to relatively greater net nitrogen loss. Coverage of cryptobiotic crusts has been reduced by anthropogenic activities during the past century, and our results suggest that destruction of the cryptobiotic crust may ultimately result in ecosystem degradation through elimination of the predominant source of nitrogen input.     

Probing the equilibrium unfolding of ketosteroid isomerase through xenon-perturbed 1H–15N multidimensional NMR spectroscopy

We used xenon-perturbed ¹H–¹⁵N multidimensional NMR to investigate the structural changes in the urea-induced equilibrium unfolding of the dimeric ketosteroid isomerase (KSI) from Pseudomonas putida biotype B. Three limited regions located on the β3-, β5- and β6-strands of dimeric interface were significantly perturbed by urea in the early stage of KSI unfolding, which could lead to dissociation of the dimer into structured monomers at higher denaturant concentration as the interactions in these regions are weakened. The results indicate that the use of xenon as an indirect probe for multidimensional NMR can be a useful method for the equilibrium unfolding study of protein at residue level.     

Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals

Lipid extraction of biomass prior to stable isotope analysis is known to cause variable changes in the stable nitrogen isotopic composition (δ¹⁵N) of residual biomass. However, the underlying factors causing these changes are not yet clear. Here we address this issue by comparing the δ¹⁵N of bulk and residual biomass of several marine animal tissues (fish, crab, cockle, oyster, and polychaete), as well as the δ¹⁵N of the extracted lipids. As observed previously, lipid extraction led to a variable offset in δ¹⁵N of biomass (differences ranging from -2.3 to +1.8 ‰). Importantly, the total lipid extract (TLE) was highly depleted in ¹⁵N compared to bulk biomass, and also highly variable (differences ranging from -14 to +0.7 ‰). The TLE consisted mainly of phosphatidylcholines, a group of lipids with one nitrogen atom in the headgroup. To elucidate the cause for the ¹⁵N-depletion in the TLE, the δ¹⁵N of amino acids was determined, including serine because it is one of the main sources of nitrogen to N-containing lipids. Serine δ¹⁵N values differed by -7 to +2 ‰ from bulk biomass δ¹⁵N, and correlated well with the ¹⁵N depletion in TLEs. On average, serine was less depleted (-3‰) than the TLE (-7 ‰), possibly due to fractionation during biosynthesis of N-containing headgroups, or that other nitrogen-containing compounds, such as urea and choline, or recycled nitrogen contribute to the nitrogen isotopic composition of the TLE. The depletion in ¹⁵N of the TLE relative to biomass increased with the trophic level of the organisms.     

Assignment of the 1H, 13C and 15N resonances of the calponin homology-2 domain of α-actinin-4

We report the assignment of the 110 amino acid second calponin homology domain of human α-actinin-4. The two calponin homology domains of α-actinin combine to regulate F-actin binding.