Diatom flora of surface sediments of the Amur River Estuary and adjacent areas of the Sea of Japan and the Sea of Okhotsk

Results of the study of the diatom flora from surface sediments of the Amur River Estuary and adjacent areas of the Sea of Japan and the Sea of Okhotsk are presented for the first time. This study revealed high species diversity of diatoms: 287 diatom taxa belonging to 80 genera were identified in 35 surface sediment samples. The ecological composition of diatom assemblages allowed us to evaluate the influence of the Amur River runoff on adjacent areas of the seas.     

The Morphology of Cysts and Motile Cells of Gyrodinium instriatum (Dinophyta), a Species New to the Seas of Russia

The germination of dinoflagellate cysts isolated from the surface sediment from Peter the Great Bay (Sea of Japan) provided motile cells of Gyrodinium instriatum. This is the first report on this species for the seas of Russia. The morphology of both collected and germinated cysts and motile cells is described, and data on the ecology and distribution of the species are provided.     

SEGREGATIVE MIGRATION OF DALL'S PORPOISE (PHOCOENOIDES DALLI) IN THE SEA OF JAPAN AND SEA OF OKHOTSK

Dall's porpoises from the Sea of Japan population taken by a dolphin fishery vessel were examined. Estimated body lengths at sexual maturity were similar to those for the truei -type population off the Pacific coast of Japan but larger than those for the offshore dalli -type in the North Pacific. The Sea of Japan population is known to migrate to the Pacific coast of Japan through Tsugaru Strait and to the Sea of Okhotsk through Soya Strait in summer. From the difference of catch composition, individuals of different reproductive status in this population are considered to have different patterns of summer migration. Most of the individuals which migrate into the Pacific Ocean through Tsugaru Strait are sexually immature, while those migrating into the Sea of Okhotsk are mature. The Sea of Okhotsk is thought to be a breeding area for this population. The calving season is estimated to be May through June, which is earlier than that of the truei -type off the Pacific coast of northern Japan. This may be an adaptation to lower water temperatures in the Sea of Japan during winter.     

Feeding and growth of Japanese scallop inhabiting different bottom sediment types

Two parts of the population of Japanese scallop Mizuhopecten yessoensis inhabiting sites with different bottom sediments in an open part of Peter the Great Bay of the Sea of Japan were compared. The scallops grew slower on muddy site compared to sandy site despite better food availability at muddy site. The food sources were determined using fatty acids as biomarkers. Analysis of the fatty acid composition of the scallops has identified diatom plankton, flagellates, and invertebrate larvae as the main scallop food sources. Benthic bacteria insignificantly contributed to the scallop diet. The food composition slightly varied in scallops on different sediment types. Most likely, low oxygen content in water, high resuspension of fine sediment particles rich in dead organic matter, and high content of contaminants accumulated in muddy sediments are the main factors of decelerated growth of scallops on muddy sites.     

The formation of the Lycodinae fauna (Perciformes: Zoarcidae) of the Sea of Japan

The subfamily Lycodinae is represented in the Sea of Japan by two genera (Lycodes and Petroschmidtia) and seven species (Lycodes japonicus, L. nakamurae, L. raridens, L. tanakae, L. teraoi, L. yamatoi, and Petroschmidtia toyamensis), which are widely distributed on the shelf and upper continental slope. Based on the geographic and bathymetric distribution of eelpouts of the Sea of Japan and adjacent waters, two groups of closely related species with different types of distribution ranges were distinguished. The first group includes pairs of species that live primarily on the continental slope and are completely isolated in the Sea of Japan or in the Sea of Okhotsk. The second group is comprised of upper interzonal species of the Sea of Japan that are found on the continental slope and shelf, as well as in the southern Sea of Okhotsk from Terpeniya Bay to the southern Kuril Islands. Their related species in the Sea of Okhotsk are mostly found to the north of the Terpeniya Bay. The study of the eelpout distribution and the data on the geological history and paleoclimate of the Far East show that the Lycodinae fauna of the Sea of Japan was formed from North Pacific eelpout-like fishes during the isolation of the sea in the late Pliocene-early Pleistocene, which was concomitant with the general cooling of the Earth’s climate. During the Pleistocene interglacials, the eelpout migrations were unidirectional, from the Sea of Japan to the southern Sea of Okhotsk. The reconstruction of the formation of the Sea of Japan Lycodinae fauna suggests that the related taxa from the Sea of Japan and the Sea of Okhotsk are separate species, while the northern and southern forms of species from the Sea of Japan (Lycodes yamatoi and L. teraoi) are no more than subspecies.     

Genetic evidence supporting the existence of two distinct species in the genusGasterosteus around Japan

Synopsis The genetic and morphological features ofGasterosteus aculeatus were investigated for 29 populations around Japan. Allozyme analyses recognized two groups (Pacific Ocean group and Japan Sea group) that had distinct characteristic features, and showed high genetic differentiation between them (D = 0.482). The Pacific Ocean group had a wide range, from North America to Japan, along the Pacific coast. The distribution of the Japan Sea group was limited around the Sea of Japan and the Sea of Okhotsk. The distribution of these groups were found to be sympatric on the Pacific coast of Hokkaido Island, Japan. From this area, genetic analyses demonstrated that the sympatric populations of the two groups formed independent breeding stocks, and it is considered that the two groups were reproductively isolated from each other. Additionally, each group had distinctive morphological features of lateral plates and caudal keels in the sympatric area. These results suggested that these two groups of the threespine stickleback comprise different species and that the Japan Sea group is taxonomically distinguishable fromG. aculeatus.     

Changes in trace metal concentrations in the tissues of the White Sea mussel <Emphasis Type="Italic">Mytilus edulis</Emphasis> over the reproductive cycle

Seasonal changes in the concentrations and total amounts (contents) of Cd, Zn, and Cu in the mussel Mytilus edulis cultivated in the White Sea were studied over the reproductive cycle (prespawning, spawning, and postspawning stages). The results, when compared with published data on the closely related species M. trossulus from the Sea of Japan, suggest that the seasonal dynamics of trace element contents in mussel tissues are related to specific geochemical conditions, as well as to the dynamics of changes in soft tissue weight over the reproductive cycle. The contents of Cd and Cu in the mussels before, during, and after spawning changed similarly in the mollusks from the White Sea and the Sea of Japan. Changes in the Zn content at different stages of the reproductive cycle of the White Sea mussels were similar to those in mussels from the Sea of Japan but had smaller amplitude. The concentration of Zn in the White Sea mussels was before spawning the highest, but still lower than in mussels from the Sea of Japan. After the spawning, the Zn concentration in the White Sea mussels, in contrast to the Pacific mussels, decreased because of the redistribution of this element during the prespawning period from the somatic tissue into the gonad.     

Biology of the swimming acorn worm Glandiceps hacksi from the Seto Inland Sea of Japan

The enteropneust hemichordate Glandiceps hacksi inhabits the muddy bottoms of the intertidal to subtidal zones of Koguno-shima Island, located in the central part of the Seto Inland Sea of Japan. Monthly collections from October 2005 to September 2007 revealed that their spawning occurs once a year, in the latter half of May. Parameters such as density and sex ratio, as well as the type of sediment, were also examined. Worm behavior and type of burrows revealed that G. hacksi are infaunal burrowers. Autotomy and regeneration of their posterior regions, and swimming behavior were also observed in an aquarium environment. This is the first comprehensive study on the biology of G. hacksi, the swimming acorn worm.     

Origin of juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> (Salmonidae) in the Sea of Okhotsk coastal waters off South Sakhalin

Based on the data of the analysis of distribution of juvenile chum salmon Oncorhynchus keta that were marked at salmon hatcheries in the southern part of the Sakhalin Island and Japan it has been established that their stocks in the Sea of Okhotsk coastal waters off South Sakhalin and Japan are of mixed origin. One part of the stock is composed of juveniles from hatcheries located in the southern part of Sakhalin, and the other part is composed of migrants from the waters adjacent to Japan. The first part is formed by juveniles both from hatcheries on the Sea of Okhotsk and Sea of Japan coasts of South Sakhalin. The second part is formed by juveniles reared at hatcheries in all regions of Japan: the Pacific and Sea of Okhotsk coasts of Honshu and Hokkaido, and from the Sea of Okhotsk coast of Hokkaido and Izmena (Nemuro) Strait. In July, in the Sea of Okhotsk coastal waters off South Sakhalin, the length and weight of most juvenile chum salmon of Japanese origin exceed 10 cm and 10 g, and juveniles of Sakhalin origin are always smaller than 10 cm and 10 g, which makes it possible to differentiate juveniles in trawl catches.     

Holoplankton of ship ballast water in the Port of Vladivostok

Ballast water samples were taken from three ships that arrived at the Port of Vladivostok (Peter the Great Bay, Sea of Japan) from ports of Japan (Sea of Japan and Pacific Ocean) and China (Yellow Sea and Yangtze River). The holoplankton in samples was presented by seven taxonomic groups, among which copepods (subclass Copepoda, 33 species) and cladocerans (subclass Cladocera, 5 species) dominated. In the samples, eight nonindigenous copepod species were revealed. The information contained in this paper may be of importance for the assessment of the risk of subsequent invasion of new species and the development of techniques for monitoring the qualitative and quantitative structures of ballast water.     

Effect of the mariculture of the Japanese scallop on foraminifera assemblages in Alekseev Bight, Sea of Japan

The species composition and population densities of foraminifera were studied in scallop farming grounds in Alekseev Bight (Amurskii Bay, Sea of Japan). Ninety-one species of foraminifera were identified; members of the Elphidiidae, Discorbidae, and Ataxophragmiidae were numerically dominant. When the scallop mariculture farm was in operation, the species composition of foraminifera in farming grounds was impoverished and their population densities were an order of magnitude lower than at more distant locations. Between 1988 and 1995, after the liquidation of the farm, the species diversity and population density of foraminifera in farming grounds increased, while there was a general decline of the foraminifera population in the bay. The highest density and species diversity of foraminifera occurred on coarse silty sand and small silty pebbles, and the lowest species diversity was found on silty sediment.     

Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea

Microbial communities inhabiting deep-sea cold seep sediments at the northeastern Japan Sea were characterized by molecular phylogenetic and chemical analyses. White patchy microbial mats were observed along the fault offshore the Hokkaido Island and sediment samples were collected from two stations at the southern foot of the Shiribeshi seamount (M1 site at a depth of 2,961 m on the active fault) and off the Motta Cape site (M2 site at a depth of 3,064 m off the active fault). The phylogenetic and terminal-restriction fragment polymorphism analyses of PCR-amplified 16S rRNA genes revealed that microbial community structures were different between two sampling stations. The members of ANME-2 archaea and diverse bacterial components including sulfate reducers within Deltaproteobacteria were detected from M1 site, indicating the occurrence of biologically mediated anaerobic oxidation of methane, while microbial community at M2 site was predominantly composed of members of Marine Crenarchaeota group I, sulfate reducers of Deltaproteobacteria, and sulfur oxidizers of Epsilonproteobacteria. Chemical analyses of seawater above microbial mats suggested that concentrations of sulfate and methane at M1 site were largely decreased relative to those at M2 site and carbon isotopic composition of methane at M1 site shifted heavier (¹³C-enriched), the results of which are consistent with molecular analyses. These results suggest that the mat microbial communities in deep-sea cold seep sediments at the northeastern Japan Sea are significantly responsible for sulfur and carbon circulations and the geological activity associated with plate movements serves unique microbial habitats in deep-sea environments.     

Bioaccumulation of lithium by marine organisms in European, American, and Asian coastal zones: microanalytic study using secondary ion emission

37 species of aquatic mammals, fish, crustacea, annelids, molluscs belonging to cephalopods, gasteropods and lamellibranchs were collected from coastal waters of France: North Sea, English Channel, Atlantic Ocean, Mediterranean Sea, from Greece: Aegian Sea, from North America: Atlantic Ocean and from Japan: Pacific Ocean, Sea of Japan and East China Sea. Microanalyses which were performed on organs and tissues, using secondary ion mass spectrometry, revealed high concentrations of lithium, which is commonly used in human therapy, but is also toxic in low amounts. The retention of this metal by the marine organisms appears as a general phenomenon independent of their biotope and geographical origin; the highest lithium levels were detected in the fish muscles (= edible part).     

Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites

To determine the process of population expansion and ascertain the origin of the Sea of Japan population, in a noxious red tide forming dinoflagellate Cochlodinium polykrikoides , 13 samples, isolated from 11 different localities in Japanese and Korean coasts, were analysed using 10 polymorphic microsatellites. Analyses by nonmetric multidimensional scaling plots of pairwise F _ST, global amova , and genetic admixture analysis identified three clusters — the Sea of Japan populations, Yatsushiro Sea (Kumamoto Pref.) populations, and other populations — indicating genetic structuring of the 13 samples into three distinct populations. In the proportion of shared alleles by pairwise individuals ( P _SAxy) analyses between the Sea of Japan and the other samples, P _SAxy was extremely low compared with that among the Sea of Japan or among other samples, indicating that a large genetic barrier has occurred between the populations. No significant relationship of isolation-by-distance patterns and almost no genetic distance were detected between pairwise samples of the Sea of Japan, although there is a maximal distance of > 600 km between samples. In addition, P _SAxy data among the samples were extremely high compared with those among other samples, clearly showing that a large-scale transfer from west to east has occurred via the Tushima Warm Current. In the P _SAxy data of the Seto Inland Sea and Pacific samples, individuals showing relatively high P _SAxy were concentrated in the three areas of Nagasaki, Harima, and Mie, suggesting that frequent transfer may have occurred by human-assisted dispersal, although Nagasaki and Mie are separated by a distance of approximately 700 km.     

Long-term occurrence of hybrids between Japan Sea and Pacific Ocean forms of threespine stickleback, <Emphasis Type="Italic">Gasterosteus aculeatus</Emphasis>, in Hokkaido Island,Japan

The distribution patterns of two genetically divergent forms (Japan Sea and Pacific Ocean forms) of Gasterosteus aculeatus and their hybrids in the Hokkaido Island, Japan were investigated. Hybrid frequencies and the mating pattern of natural F1-hybrids and backcrosses, were examined by using allozyme analysis. The distribution patterns matched those previously reported. All three sympatric localities in eastern Hokkaido Island included hybrids between the two forms in each year examined. A low frequency of hybrids of sticklebacks has been maintained in areas of sympatry of the two forms in Hokkaido Island for several years. The proportion of F1-hybrids was significantly lower than expected by random mating in six samples from four sympatric populations, suggesting form-assortative mating. Mating crosses of natural F1-hybrids existed in both patterns. Natural F1-hybrids backcrossed more frequently with Pacific Ocean form than Japan Sea form. However, the proportions of backcross individuals in two of three samples were not significantly different from the expected proportions by random mating between F1-hybrids and their parent forms. In other samples, despite the Pacific Ocean form predominant in a population, F1-hybrid predominantly backcrossed with the Japan Sea form. These results support the hypothesis of gene flow from Pacific Ocean to Japan Sea forms.     

A permanent fish cell line (EPC) for genotoxicity testing of marine sediments with the comet assay.

Genotoxicity and cytotoxicity were evaluated in an in vitro system with a permanent cell line Epithelioma papulosum cyprini (EPC) derived from a skin tumour of carp (Cyprinus carpio L.). EPC cells were exposed to different concentrations of organic sediment extracts from the North Sea for 24h. After incubation the cells were analysed for viability and DNA strand breaks with the comet assay or single cell gel electrophoresis (SCGE). The results confirm the sensitivity of this assay. Out of 10 marine sediment samples from the North Sea, 9 showed a dose-dependent genotoxic effect. The EC(50) of sediment extracts ranged from 7 to 307 mg sediment dry weight/ml assay volume. Hepatic microsomal enzymes from dab (Limanda limanda L.) was proposed for enzymatic activation of benzo[a]pyrene (BAP) or sediment extracts, respectively. The suitability of this in vitro test system for assessing genotoxic and cytotoxic effects of marine sediment extracts on EPC cells could be demonstrated.     

The Holocene climatic optimum at the southern coast of the Sea of Japan

Palynological spectra were studied from piston-cores of bottom sediments in the southwestern part of the Sea of Japan and the East Korea Bay. Five palynological assemblages were revealed in the sediments of the deep core and three, in the shelf core. The palynological assemblages were formed during different climatic phases and reflect main stages in the development of the vegetation of the region. The Holocene optimum was determined for the southern coast of the Sea of Japan.     

Intraspecific differences in patterns of courtship behaviours between the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus

The courtship behaviour of the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus were studied in seven populations. The intraspecific difference in behavioural patterns, zigzag dance and weak dorsal pricking in the Pacific Ocean form and lateral display and vigorous dorsal pricking in the Japan Sea form, was clearly distinguishable regardless of the type of habitat the males lived in.     

Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis

Abstract The diversity of bacterial communities in deep marine sediments, up to 503 metres below the sea floor of the Japan Sea, was investigated by sequence analysis of amplified 16S rRNA genes. The use of different sample handling procedures greatly affected the types and diversity of sequences obtained. DNA from sediment samples stored aerobically for up to 24 h before freezing was dominated by sequences belonging to the β- and γ-proteobacteria, many of which appeared to originate from aerobic bacteria. Sub-samples equilibrated anaerobically at 16°C, were then injected with a radiotracer and immediately frozen, to simulate the conditions of a typical control sample from a radiotracer based activity assay, contained mostly α-proteobacterial sequences. Pristine sediment samples taken anaerobically and frozen within 2 h contained the widest diversity of sequences from α-, γ-, δ-proteobacteria and Gram-positive bacteria, which appeared to have originated from predominantly anaerobic or facultative bacteria. It was clear that both samples that were not frozen immediately (within 2 h) showed signs of enrichment of specific bacterial groups. Our results strongly suggest that immediate freezing should always be employed when sediment samples are to be used to assess bacterial diversity by molecular methods.     

Linkages between surface and deep circulations in the southern Japan Sea during the last 27,000 years: Evidence from planktic foraminiferal assemblages and stable isotope records

We analyzed planktic foraminiferal assemblages, oxygen and carbon isotope records, and the presence or absence of laminations to reconstruct the paleoenvironments of the southern Japan Sea since the last glacial period. Data were collected from two well-dated cores. One core (water depth 999 m) included thinly laminated mud layers, the other (water depth 283 m) contained nonlaminated sediments. Tephrochronology and accelerator mass spectrometry ¹⁴C dating of 14 horizons revealed that the two cores contained continuous records of the last 27 cal kyr. A total of 13 planktic foraminiferal species belonging to six genera were identified in down-core samples. The typical indicators of the Tsushima Current water, Globigerinoides ruber, Neogloboquadrina dutertrei, Pulleniatina obliquiloculata, Globigerinoides tenellus, and Globigerinita glutinata occurred since 9.3 cal kyr BP. Neogloboquadrina incompta, which was the dominant species in the Tsushima Current region of the modern Japan Sea, first occurred at 8.2 cal kyr BP and dominated the assemblage since 7.3 cal kyr BP. These results clearly indicate that the warm Tsushima Current started to inflow into the Japan Sea at 9.3 cal kyr BP, and the modern surface conditions in the southern Japan Sea were essentially established at 7.3 cal kyr BP. Our data and comparison of the presence or absence of laminated sediments in three locations from the southern Japan Sea suggest that deep circulation during the deglacial period was weaker than that at present. In addition, deep circulation in the modern Japan Sea, which supplies oxygen-rich water to the entire basin, started probably in association with the first inflow of the Tsushima Current beginning at 9.3 cal kyr BP.