Is my study system good enough? A case study for identifying maternal effects

In this paper, we demonstrate how simulation studies can be used to answer questions about identifiability and consequences of omitting effects from a model. The methodology is presented through a case study where identifiability of genetic and/or individual (environmental) maternal effects is explored. Our study system is a wild house sparrow (Passer domesticus) population with known pedigree. We fit pedigree‐based (generalized) linear mixed models (animal models), with and without additive genetic and individual maternal effects, and use deviance information criterion (DIC) for choosing between these models. Pedigree and R‐code for simulations are available. For this study system, the simulation studies show that only large maternal effects can be identified. The genetic maternal effect (and similar for individual maternal effect) has to be at least half of the total genetic variance to be identified. The consequences of omitting a maternal effect when it is present are explored. Our results indicate that the total (genetic and individual) variance are accounted for. When an individual (environmental) maternal effect is omitted from the model, this only influences the estimated (direct) individual (environmental) variance. When a genetic maternal effect is omitted from the model, both (direct) genetic and (direct) individual variance estimates are overestimated.     

Do agri-environmental schemes contribute to high nature value farmland? A case study in Emilia-Romagna (Italy)

The objective of the paper is to determine whether the agri-environmental schemes included in the rural development programme of Emilia-Romagna (Italy) have played a role in enhancing the nature value of farmland in that region. An indicator is developed for biodiversity friendly farming practices (BFFP) and its level and distribution at the municipality level is measured, using data derived from the two last national agricultural censuses, year 2000 and 2010. Thereafter, the relationship between BFFP and participation in rural development measures is analysed by way of spatial econometric techniques. The main result of the paper are consistent with the expectation that RDPs have an impact on how BFFP changes. However, measures supporting organic farming contribute to the evolution of its distribution in a positive manner, whilst the other measures investigated, such as integrated production, do not. The paper also highlights the fact that these effects have significant spatial correlations.     

Does reproductive success increase with age or with size in species with indeterminate growth? A case study using sand lizards (Lacerta agilis)

Most data on determinants of reproductive success (RS) and reproductive tactics are correlational in nature, and hence cannot be used to infer causation. Consistent patterns-such as an increase in RS with age, as seen in many types of organisms-may result from diverse underlying mechanisms. Ontogenetic increases in RS in mammals and birds may be due largely to direct effects of age (via learning, etc.) but our analyses show that apparently analogous ontogenetic shifts in reproductive tactics and increases in RS in sand lizards (Lacerta agilis) are actually due to ontogenetic changes in body size. When size effects are removed, age exerts very little effect on either reproductive behaviour or RS in either sex. In many taxa, both age and body size may exert important effects on reproductive biology, and disentangling these effects should be a focus of further research.     

A nodding capitulum enhances the reproductive success of Cremanthodium campanulatum (Asteraceae) at high elevations in the Sino–Himalayan Mountains

Background: Flower orientation is considered an evolutionary response to pollinators and abiotic factors. Several members of the genus Cremanthodium (Asteraceae) growing in alpine habitats in the Sino–Himalayas have conspicuously nodding capitula, the function of which is not understood.

Aims: We investigated the influences of nodding capitula on floral thermal conditions, pollinator visitation rate, pollen viability and achene production in Cremanthodium campanulatum.

Results: (1) the nodding capitulum did not modify internal thermal conditions, but the elongated involucral bracts could shelter pollen from UV-B radiation; (2) water and UV-B radiation seriously reduced the viability of pollen grains; (3) capitula artificially held erect set significantly fewer achenes than nodding ones; and (4) no pollinator preference was observed between capitula that were artificially held erect and natural nodding ones.

Conclusions: This study indicated that the nodding capitulum of C. campanulatum may protect pollen from being damaged by UV-B radiation, being washed away from the anther and stigma, and enable it to avoid rain damage during the wet monsoonal period. Our results suggest that nodding capitula in C. campanulatum possibly confer a selective advantage and may be driven by non-biological agents rather than pollinator attractors.     

Is the Natura 2000 network sufficient for conservation of butterfly diversity? A case study in Slovenia

Slovenia has one of the most extensive Natura 2000 networks in Europe with 259 SAC’s covering 31.4% of the country. To determine how well does the current network cover the areas of high butterfly diversity and/or aggregation of the butterfly species of conservation concern, the data from the recent survey for a distribution atlas were used. Altogether 99,423 records of 173 species collated after 1979 were used. The data distribution is slightly biased towards SAC’s, with 44.8% of localities within them, most likely due to sparsely sampled urban areas and intensive farmland areas which are found only outside SAC’s. The diversity and distribution of red listed species was evaluated at a 5 × 5 km grid square level. Additionally the importance of the size of the SAC’s was compared to their butterfly species diversity. In general the high diversity areas also hold the largest aggregation of red listed species with core areas concentrated in SW Slovenia. The SAC’s cover majority of areas with high diversity and the distribution of all but one threatened butterfly species. That species is Colias myrmidone, which is now considered extinct in Slovenia with no records after 1993. The most prominent areas with high conservation value in Slovenia not included in the SAC’s network are the Koro?ka region, Gori?ka Brda region, lower Sava River valley and Slovenske Gorice region. The butterfly diversity in small SAC’s is relatively high with increases in size only gradually increasing the species numbers, thus emphasizing the importance and conservation value of small SAC’s for sustaining high butterfly diversity in Slovenia.     

Is osmotic adjustment required for water stress resistance in the Mediterranean shrub Atriplex halimus L?

The effect of water stress was investigated in plants from two populations of Atriplex halimus L: Tensift issued from a salt-affected coastal area and Kairouan, originating from an inland dried site. Water deficit was applied by withholding water for 22 days. Shoot dry weight (shoot DW), leaf relative water content (RWC), turgid weight to dry weight ratio (TW/DW), osmotic potential (psis), osmotic adjustment (OA), proline, glycinebetaine, and sugar content were determined 1, 8, 15 and 22 days after withholding watering. Water stress induced a decrease in shoot DW, RWC, psis, and TW/DW, but an increase in glycinebetaine and sugar leaf contents. The decrease of psis and TW/DW was more marked in Kairouan than in Tensift. At the end of the stress period, Kairouan showed a greater OA compared with Tensift. However, the contribution of net solute accumulation (OAacc) was similar in both populations in response to stress. Water stress resistance could thus not be associated with higher OA, although the ability of plants to regulate these metabolic and physiological functions could play an important role under harmful conditions. The possible roles of osmolyte accumulations are discussed in relation to the specific physiological strategy of water-stress-resistance in this species.     

Are empidine dance flies major flower visitors in alpine environments? A case study in the Alps,France

Pollination is one of the most important ecosystem services and bees the most important pollinators. As a population decline of bees has been documented in numerous regions of the world, it is crucial to develop understanding on other possible pollinators. Here, we study the potential pollination impact of Diptera, and among them Empidinae, in an alpine environment, where the abundance of bees is naturally lower. Interactions between 19 entomophilous plants and their flower visitors were recorded in a subalpine meadow in the French Alps during six weeks. Visitation frequencies were used to build the flower–visitor network. Our results show that interactions between flies and plants are dominant; flies represent more than 60% of all visitors, with 54% of them being Empidinae. We especially found that flies, Empidinae and bees are the main visitors of 11, three and one plants, respectively. When considering both bees and Syrphidae together, six plants were more visited by Empidinae; when considering bees and Syrphidae separately, 10 plants were more visited by Empidinae than by bees or Syrphidae. The results support the idea that flies widely replace bees as main flower visitors at altitude, and among them the Empidinae might play a key role in pollination.     

pH as a proxy for estimating plant-available Si? A case study in rice fields in Karnataka (South India)

Background and aims

Soil nutrient dynamics are affected by root-microbe interactions and plant development. We investigated the influence of plant growth stage and arbuscular mycorrhiza fungi (AMF) on carbon (C) and nitrogen (N) rhizodeposition and the transfer into the microbial biomass (MB).

Methods

Pea varieties (Pisum sativum L.) with (Frisson) and without mycorrhiza (P2) were ¹³C-¹⁵N-labelled and harvested at 45, 63, 71, and 95 days after sowing. Mycorrhization, MB, total C, N, ¹³C, ¹⁵N were determined in plant and soil compartments to calculate C and N derived from rhizodeposition (CdfR, NdfR).

Results

Total CdfR increased until pea maturity, NdfR until end of flowering. Their relative contribution steadily decreased over time, accounting for 4–10% of total plant C and N at harvest. Rhizodeposition contributed between 1 and 6% to MB C and N, although 20% of the rhizodeposits were discovered in the MB. Frisson released more NdfR than P2 but it was not possible to accurately estimate AMF effects on C and N due to differences in biomass partitioning.

Conclusions

CdfR followed an even flow from early growth until senescence. NdfR flow ceased after flowering possibly due to N relocation within the plant. Rhizodeposits contribute very little to MB in our study.

     

Isolated populations or isolated taxa? A case study in narrowly-distributed snapdragons (Antirrhinum sect. Sempervirentia) using RAPD markers

RAPD fingerprinting was used to study species boundaries in narrowly distributed endemic species in Antirrhinum section Sempervirentia. Based on RAPD data, similarity values within species were relatively high but pair-wise similarity values among species were low. Partitioning of the overall RAPD variation using AMOVA showed that most of the variation was found among species (58.06%), whereas the remaining phenotypic diversity was distributed among populations (25.18%) and among individuals within populations (16.76%). Comparison of the matrices of geographical distances and phenetic distances (1-Dice index) among populations using the Mantel test showed a moderate, but statistically significant correlation (r=0.588, P < 0.01), suggesting that isolation by distance is responsible for the distribution of genetic variation among Antirrhinum populations. Phenetic relationships among Antirrhinum samples based on a Dice similarity matrix showed a clear taxonomic pattern, confirming the grouping of individuals within their own populations and the clustering of populations within species. Individuals of A. charidemi, A. valentinum and A. subbaeticum, from subsection Valentina, made up a discrete group, whereas the samples belonging to subsection Sempervirentia (A. petegasii, A. sempervirens, A. microphyllum, A. pulverulentum) clustered together. RAPD data are entirely congruent with the subsection classification scheme proposed by Fernández Casas (1997) in section Sempervirentia. However, A. subbaeticum, treated as a synonym of A. valentinum by Fernández-Casas (1997), showed an unique RAPD profile characterized by the highest number of fixed species-specific markers found in section Sempervirentia. Thus, although A. valentinum appeared the most closely related species to A. subbaeticum, molecular data suggested that this species merits taxonomic distinction.     

Is use of translocation for the conservation of subpopulations of oribi Ourebia ourebi (Zimmermann) effective? A case study

In South Africa, the oribi, Ourebia ourebi is an endangered small antelope that requires conservation management and intervention to prevent their extinction. Use of translocation for the conservation of subpopulations facing local extinction in the wild has been proposed. In this study, fifteen oribi from threatened populations were captured and released (November 2004) on a private game reserve in KwaZulu-Natal, South Africa. Radio telemetry was used to monitor the dispersal and survival of translocated oribi. Only one death occurred during that period. All other released oribi survived, and most remained in close proximity of the release site for more than a year postrelease. Reproduction also occurred. This suggests that, translocation could be a viable option for conserving wild populations of oribi, assuming that other factors, such as availability of suitable grassland habitat and that poaching has been curtailed, are met.     

Is population genetic structure of vascular plants shaped more by ecological or geographic factors? A study case on the Mediterranean endemic Centaurea filiformis (Asteraceae)

• All known populations of the Sardinian endemic Centaurea filiformis Viv. (Asteraceae) were studied in order to understand the impact of both geographic and ecological factors on the genetic structuring of this species.
• Fourteen populations and 234 individuals were sampled. The demographic structure of the populations and the reproductive ecology were estimated in 28 plots. Population genetic analyses were based on SSR markers. Genetic structure was investigated by spatial Bayesian methods.
• Average densities of 0.51 individuals m^?2 were detected, with a prevalence of adults. Ten species of pollinators were identified; C. filiformis ability to self‐pollinate and myrmecochory were demonstrated experimentally. The populations displayed an average heterozygosity value of H _e = 0.576 and high genetic differentiation (overall F _ST = 0.218). Bayesian analysis suggests that five is the most probable number of gene pools of origin. A strong correlation between geographic distances and genetic distances among populations was highlighted.
• The demographic population structure of C. filiformis is dominated by adults, suggesting that it is a stable‐regressive or senile species, investing more in local persistence than colonisation ability. Despite the scattered distribution, the populations studied do not present evidence of genetic erosion. The analysis of genetic differentiation reveals very high differentiation levels among populations, thus indicating that effective barriers exist against gene flow. A general conclusion is that population distribution results in a clear genetic structure for the populations studied, and that geography and not ecology is shaping the present distribution of this species.

     

Is urban spontaneous vegetation rich in species and has potential for exploitation? - A case study in Baoji,China

Abstract

To strengthen the exploitation and utilization of groundcover resources of spontaneous vegetation, this study was carried out by using a linear measurement method for species investigation of spontaneous vegetation in Baoji green space, China. The results showed that 122 spontaneous vegetation species were identified including 100 genera and 38 families. Species richness (SR) in semi-open green space was significantly higher than other green spaces; the Shannon-Wiener diversity index (SHDI) of semi-open and closed green spaces was significantly higher than other green spaces; the Pielou evenness index (E) of closed green space was significantly higher than others. The Sørensen–Dice similarity coefficient (SDI) of the total species between the four type of structural habitats first decreased and then rose along with the increased gradients of the canopy closure, while the SDI of the widely distributed species (frequency ≥ 10) slightly rose in the beginning and subsequently sharply decreased, it is SDI that between semi-closed and closed green is only 19.05%. In addition, the potential application of spontaneous wild vegetation was analyzed and discussed in order to provide a theoretical basis and development ideas for enriching urban landscape characteristics, constructing a better grassland ecosystem in Chinese cities, and developing new urban ecological designs.     

Is proline the quintessential sentinel of plants? A case study of postharvest flower senescence in Dianthus chinensis L.

The present investigation primarily focussed on evaluating the efficacy of exogenous proline on the flower longevity of Dianthus chinensis L. Floral buds were harvested at the paint brush stage (i.e., a day prior to anthesis) and divided into 6 sets, with one set of buds (i.e., control) held in distilled water and rest of the 5 sets were supplemented with various concentrations of proline, viz., 10 mM, 20 mM, 30 mM, 40 mM and 50 mM. The application of proline at 40 mM concentration proved out to be most effective in improving the longevity of the flowers by about 4 days as compared to the control. The ameliorated longevity coincided with enhanced floral diameter, fresh mass, dry mass and water content. The flowers with delayed senescence also maintained higher soluble proteins, sugars and phenols. The results suggest that exogenous proline effectively alleviates oxidative stress in the petal tissue, as evident by a relatively lower maloendialdehyde content, which is manifested in the form of reduced lipid peroxidation (LPO). Reduced LPO was commensurate with increased membrane stability, quantified by membrane stability index. Moreover, the flowers with improved longevity exhibited a decline in lipoxygenase activity and significant augmentation of antioxidant enzymes superoxide dismutase, catalase and ascorbate peroxidase.     

Tree age‐dependent changes among epiphytic bryophyte communities in Mediterranean environments. A case study from Sicily (Italy)

Abstract

The epiphytic bryophytes inhabiting trees of different size/age in a Quercus ilex wood from Madonie Mountains (northern Sicily, Italy) were studied with the purpose of describing the changes that take place in the bryophyte stratum during the tree lifespan. Results indicate an increase of bryophyte cover combined with a progressive decrease of epiphytic lichens and the existence of an active process of species and community substitution. The way these processes take place corresponds to a succession sequence, which is characterised by a high number of pioneer species on the youngest trees and a sharp decline of species number on middle‐aged and old trees due to the great spread of Leptodon smithii and a few other pleurocarpous mosses. The comparison of these traits to those from central Spain evidences differences in patterns of tree colonisation by epiphyte bryophytes between the two areas and suggests that climatic conditions play a chief role in the epiphytic bryophyte establishment and succession in Mediterranean areas.     

Is social dispersal stressful? A study in male crested macaques (Macaca nigra)

In gregarious species, dispersal events represent one of the most dramatic changes in social life and environment an animal will experience during life due to increased predation risk, aggression from unfamiliar conspecifics and the lack of social support. However, little is known about how individuals respond physiologically to dispersal and whether this process is stressful for the individuals involved. We therefore studied the physiological stress response during dispersal in the crested macaque, a primate species in which males often change groups. Over a period of 14 months and 14 dispersal events in 4 groups, we determined faecal glucocorticoid metabolite (FGCM) levels during the process of immigration into a new group and examined a variety of factors (e.g. male age, rank achieved, number of males in the group) potentially affecting FGCM levels during this process. We found that FGCM levels were significantly elevated in the first few days upon immigration, after which levels returned quickly to baseline. FGCM response levels upon immigration were significantly and positively influenced by the number of males in the group. The rank a male achieved upon immigration, aggression received, as well as the proximity to other males did not significantly influence FGCM levels. Our data confirm previous findings on other species demonstrating that in crested macaques immigration into a new social group is associated with an acute endocrine stress response. However, given that stress hormone levels remained elevated only for a short period of time, we do not expect males to experience high physiological costs during immigration. Given our limited knowledge on the physiological responses to dispersal in animals, this study contributes to our understanding of dispersal more generally, and particularly inter-individual differences in the stress response and the potential physiological costs associated with these.     

Does higher ploidy level increase the risk of invasion? A case study with two geo-cytotypes of Solidago gigantea Aiton (Asteraceae)

Aims Understanding the role of genetics in biological invasions has become an important aspect for modern plant ecology. Many studies suggest that increased ploidy level benefits the success of an invasive species, but the basis for this phenomenon is not fully understood. In its native, North American range, Solidago gigantea has three geo-cytotypes comprising di-, tetra- and hexaploid populations, while in Europe, where it is highly invasive, S. gigantea stands are composed primarily of tetraploid individuals. Our study investigates whether North American hexaploids can induce a greater risk of invasion, due to their higher performance in a non-native range, as compared to the existing tetraploids of that range.Methods We performed greenhouse and common garden experiments along with microsatellite analyses to test whether differences in chromosome number and origin of the species mean superior fitness in the introduced range.Important findings Genetic diversity was significantly higher in the native hexaploid populations (A R = 6.04; H e = 0.7794), rather than the non-native tetraploid populations (A R = 4.83; H e = 0.6869). Furthermore, differentiation between geo-cytotypes was moderate (ρ ST = 0.1838), which was also confirmed by their clear segregation in principal component analysis and structure analyses, proving their different genetic structure. In contrast to genetic diversity, the non-native tetraploid geo-cytotype performed better in the common garden experiment, implying that higher genetic diversity does not always mean better success. Our results suggest that native hexaploids do not present a greater risk, as assessed by their performance in the introduced range, when compared to the non-native tetraploids, as was suggested by previous studies. Nevertheless, their introduction is still undesirable due to their different genetic structure, which, through hybridization, could give a new drive to the invasion of S. gigantea .     

Does light pollution alter daylength? A test using light loggers on free-ranging European blackbirds (Turdus merula)

Artificial light at night is one of the most apparent environmental changes accompanying anthropogenic habitat change. The global increase in light pollution poses new challenges to wild species, but we still have limited understanding of the temporal and spatial pattern of exposure to light at night. In particular, it has been suggested by several studies that animals exposed to light pollution, such as songbirds, perceive a longer daylength compared with conspecifics living in natural darker areas, but direct tests of such a hypothesis are still lacking. Here, we use a combination of light loggers deployed on individual European blackbirds, as well as automated radio-telemetry, to examine whether urban birds are exposed to a longer daylength than forest counterparts. We first used activity data from forest birds to determine the level of light intensity which defines the onset and offset of daily activity in rural areas. We then used this value as threshold to calculate the subjective perceived daylength of both forest and urban blackbirds. In March, when reproductive growth occurs, urban birds were exposed on average to a 49-min longer subjective perceived daylength than forest ones, which corresponds to a 19-day difference in photoperiod at this time of the year. In the field, urban blackbirds reached reproductive maturity 19 day earlier than rural birds, suggesting that light pollution could be responsible of most of the variation in reproductive timing found between urban and rural dwellers. We conclude that light at night is the most relevant change in ambient light affecting biological rhythms in avian urban-dwellers, most likely via a modification of the perceived photoperiod.     

Does human-induced habitat transformation modify pollinator-mediated selection? A case study in Viola portalesia (Violaceae)

Pollinator-mediated selection is one of the most important factors driving adaptation in flowering plants. However, as ecological conditions change through habitat loss and fragmentation, the interactions among species may evolve in new and unexpected directions. Human-induced environmental variation is likely to affect selection regimes, but as yet no empirical examples have been reported. In the study reported here, we examined the influence of human-induced habitat transformation on the composition of pollinator assemblages and, hence, pollinator-mediated selection on the flower phenotype of Viola portalesia (Violaceae). Our results indicate that pollinator assemblages differed substantially in terms of species composition and visitation rate between nearby native and transformed habitats. Similarly, the insect species that contributed most to visitation rates differed between plant populations. While the magnitude and sign of pollinator-mediated selection on flower length and width did not differ between sites, selection for flower number lost significance in the transformed habitat, and a significant pattern of disruptive selection for flower shape, undetected in the native habitat, was present in the transformed one. Overall, the results of this study suggest that human-induced habitat change may not only modify the species composition of pollinator assemblages, relaxing the selection process on some flower characters, but they may also create new opportunities for fitness-trait covariation not present in pristine conditions.     

Can ants be used as ecological indicators of restoration progress in dynamic environments? A case study in a revegetated riparian zone

Ant assemblages are focal ecological indicators of progress in mine-site restoration, often showing increasing species richness with restoration age. Certain functional groups also behave in predictable ways in response to disturbance and changes in the environment. Whether these ant responses can be applied to other types of restoration and ecosystems is unknown, especially in dynamic environments and where gradients may not be as severe as in mine-site restoration. Ant assemblages would be expected to perform poorly as ecological indicators in dynamic environments because such environs are subject to periodic disturbance of important habitat features. Indeed, periodic disturbance may limit the predictive power of any ecological indicator. In this study, we trapped ants on two separate occasions to compare ant assemblages among four riparian habitat types (Unplanted grassland, Young revegetation, Older revegetation and Mature woodland). These habitat types were assumed to represent progressive stages of restoration. In contrast to the findings of others, species richness was variable among replicate locations of the same habitat type, and did not differ among the four habitat types. Also in contrast to what others have found for functional groups, dolichoderines were equally abundant in all habitat types and did not decrease in abundance with vegetation maturity. While generalized myrmicines and opportunists became more common with maturation of the vegetation, they did not replace dolichoderines as the most common ants. Surprisingly, the relative abundance of Subordinate Camponotini, a functional group considered to be of limited use in discriminating structural types, increased across the restoration gradient. There were also fairly distinct species assemblages associated with unplanted grassland and mature woodland. Communities in revegetated habitats were intermediate of these extremes, suggesting there is a level of predictiveness to their response to revegetation in this system. While species richness and a functional group approach would be of little use in this environment, species composition would provide a useful gauge of restoration progress. Ant species richness and functional group metrics have repeatedly been advocated as ecological indicators. Given our results, we caution against the blind application of metrics that have not been validated in the context in which they are to be applied.     

Can the problem of hybridization in threatened species be evaluated using a fieldwork research? A case study in snapdragons

Hybridization, natural or artificial, is considered disadvantageous for species biodiversity when it threatens the population integrity of endangered species. Frequently, studies investigating whether hybridization poses a legitimate risk to rare species are based on genetic data obtained in molecular biology laboratories. In this study, we used field research to approach the problem that hybridization could cause for the viability of a population of a rare species and to be able to propose the most appropriate initial conservation strategy. Specifically, using the model genus Antirrhinum, the reproductive barriers between the rare A. pulverulentum and its common congener A. litigiosum have been analysed under the reproductive isolation index (RI). A. pulverulentum had a high value of total RI, indicating that there are barriers to gene flow from A. litigiosum towards this species, and also had a high value for the intrinsic RI, reflecting a low inherent capacity for production of hybrid plants; in addition, the possibility of successful backcrosses between this species with hybrids produced from A. litigiosum ovules were low, given the high intrinsic RI of A. litigiosum. These data indicate the current existence of strong and permanent barriers to hybridization between the two species, suggesting that hybridization does not seem to be a serious problem for the conservation of A. pulverulentum in the studied population, nor for the near future. This study shows how the RI index can provide useful information for conservation purposes and proposes different management recommendations.