Genetic analysis provides insights into species distribution and population structure in East Atlantic horse mackerel (Trachurus trachurus and T. capensis)

Two sister species of horse mackerel (Trachurus trachurus and T. capensis) are described that are intensively harvested in East Atlantic waters. To address long-standing uncertainties as to their respective geographical ranges, overlap and intraspecific population structure this study combined genetic (mitochondrial DNA and microsatellite) analysis and targeted sampling of the hitherto understudied West African coast. mtDNA revealed two reciprocally monophyletic clades corresponding to each species with interspecies nuclear differentiation supported by F_ST values. The T. trachurus clade was found across the north-east Atlantic down to Ghana but was absent from Angolan and South African samples. The T. capensis clade was found only in South Africa, Angola and a single Ghanaian individual. This pattern suggests that both species may overlap in the waters around Ghana. The potential for cryptic hybridization and/or indiscriminate harvesting of both species in the region is discussed. For T. capensis mtDNA supports high gene flow across the Benguela upwelling system, which fits with the species' ecology. The data add to evidence of a lack of significant genetic structure throughout the range of T. trachurus though the assumption of demographic panmixia is cautioned against. For both species, resolution of stock recruitment heterogeneity relevant to fishery management, as well as potential hybridization, will require more powerful genomic analyses.     

BIOCHEMICAL TAXONOMY OF MARINE PHYTOPLANKTON BY ELECTROPHORESIS OF ENZYMES. I. THE CENTRIC DIATOMS THALASSIOSIRA PSEUDONANA AND T. FLUVIATILIS1,2

Diatom systematics depends almost entirely upon structure of the silica shell. It is not known to what extent the taxonomic species, as defined by shell structure, corresponds to the genetic species—i.e., to the reproductively isolated population. As an approach to this problem, we report here a comparison of enzymes by electrophoresis. We have examined the genetic constitution of a number of clones of (presumably) the same species for each of 2 closely related, centric diatom species: Thalassiosira pseudonana Hasle and Heimdal and T. fluviatilis Hustedt. The 4 clones of T. fluviatilis form a distinct group, clearly separated from all the T. pseudonana clones. Within T. pseudonana, 4 estuarine clones and one reef clone form a group that is distinctly different from 4 oceanic clones. A single clone of T. pseudonana from the Continental Slope waters is intermediate between these 2 groups and probably shares genes with both groups, indicating that the 2 T. pseudonana groups are not genetically isolated. We conclude that i) within groups, isolates are closely related even though they originated from different continents; and, ii) T. pseudonana is subdivided into ecological races.     

Tropodiaptomus zambeziensis,T. bhangazii and T. capriviensis,three new species of Tropodiaptomus (Copepods,Calanoida) from southern Africa

Three new species of Tropodiaptomus from southern Africa are described, Tropodiaptomus zambeziensis, T. bhangazii, and T. capriviensis. Type localities are a rice paddy on the Zambezi river delta, a coastal lake in Zululand, and temporary pools in Bushmanland and the eastern Caprivi in Namibia. Speciation of Tropodiaptomus in the warm inland waters of southern Africa is much more extensive than was formerly realised.     

Tormopsolus attenuatus n. sp. (Digenea: Acanthocolpidae) from Seriola hippos (Perciformes: Carangidae), Western Australia,with some observations on the relationships in the genus

A new acanthocolpid, Tormopsolus attenuatus n. sp., is described from the carangid Seriola hippos from waters off the coast of SW Australia. A cladistic analysis of the genus using 31 morphological and metrical characters indicates that the closest species is T. asiatica Parukhin, 1976 status amend. (previously T. orientalis asiatica). T. attenuatus differs from T. asiatica in its smaller overall dimensions, more attenuated outline, relatively shorter post-testicular region, vitelline interruption at the level of the ovary, papillae on the oral sucker and, possibly, much longer genital atrium. Other similar species, T. orientalis Yamaguti, 1934 and T. medius Reimer, 1983, differ in having interruptions of the vitelline fields at the level of both testes and at the level of the ovary.     

Phylogenetic placement and population structure of Indo‐Pacific bottlenose dolphins (Tursiops aduncus) off Zanzibar,Tanzania, based on mtDNA sequences

Phylogenetic placement of bottlenose dolphins from Zanzibar, East Africa and putative population differentiation between animals found off southern and northern Zanzibar were examined using variation in mtDNA control region sequences. Samples (n= 45) from animals bycaught in fishing gear and skin biopsies collected during boat surveys were compared to published sequences (n= 173) of Indo‐Pacific bottlenose dolphin, Tursiops aduncus, from southeast Australian waters, Chinese/Indonesian waters, and South African waters (which recently was proposed as a new species) and to published sequences of common bottlenose dolphin, Tursiops truncatus. Bayesian and maximum parsimony analyses indicated a close relationship between Zanzibar and South African haplotypes, which are differentiated from both Chinese/Indonesian and Australian T. aduncus haplotypes. Our results suggest that the dolphins found off Zanzibar should be classified as T. aduncus alongside the South African animals. Further, analyses of genetic differentiation showed significant separation between the T. aduncus found off northern and southern Zanzibar despite the relatively short distance (approximately 80 km) between these areas. Much less differentiation was found between southern Zanzibar and South Africa, suggesting a more recent common evolutionary history for these populations than for the northern and southern Zanzibar populations.     

Thermosphaeroma subequalum,n. gen., n. sp. (crustacea: Isopoda) from Big Bend National Park,Texas

A new species of the Sphaeromatidae (Thermosphaeroma subequalum) is described from thermal waters (32° –35dgC) in Big Bend National Park, Brewster Co., Texas. A new genus, Thermosphaeroma, is proposed to include the Texas species and other sphaeromatids from hot springs in the American Southwest and Mexico: Exosphaeroma dugesi (Dolffus, 1893) from Aguascalientes, Mexico, and E. thermophilum (Richardson, 1897) from Socorro, New Mexico.Supported by National Park Service Contract PX 7000 3 0502, awarded to Owen T. Lind, Baylor University.     

First report of three benthic dinoflagellates,Gambierdiscus pacificus,G. australes and G. caribaeus (Dinophyceae), from Hainan Island,South China Sea

Species of the marine benthic dinoflagellate genus Gambierdiscus are the principal cause of Ciguatera fish poisoning. This genus has been recorded from tropical to temperate oceans, although Gambierdiscus species have rarely been found in Chinese waters. Our work revealed the morphological and genetic characteristics of three potentially toxic Gambierdiscus species observed in the temperate to subtropical waters of China. The fine thecal morphology was determined based on light microscopy and scanning electron microscopy analyses, and these species were also characterized by sequencing the D1–D3 and D8–D10 regions of the LSU rDNA. The morphological and genetic data indicated that these three Gambierdiscus species were G. pacificus, G. australes and G. caribaeus. This work provides the first report of these species in Chinese waters, which increases the known species distribution of this genus.     

PARMALES (CHRYSOPHYCEAE) FROM THE GULF OF TEHUANTEPEC,MEXICO, INCLUDING THE DESCRIPTION OF A NEW SPECIES,TETRAPARMA INSECTA SP. NOV., AND A PROPOSAL TO THE TAXONOMY OF THE GROUP1

There are few studies dedicated to species of the Order Parmales all over the world. All 12 taxa described are part of the marine ultraplankton (less than 5 μm). Analysis of filtered samples from the Gulf of Tehuantepec yielded specimens of two taxa of the group. One is a new species, belonging to the genus Tetraparma. Tetraparma insecta sp. nov. is solitary and spherical (2.8–3.8 μm diameter), and all plates lack ornamentations or knobs, the walls are smooth, and only the plate junctions are seen. The shield plates are convex and show a conspicuous rim, some of them with an indentation. This species shows superficial similarities with Tetraparma pelagica, the other species described of the genus, and is very similar to siliceous forms, previously found, with no formal name. The other species is the taxon Triparma laevis form mexicana (Kosman) stat. nov., earlier described for Mexican waters, which has an irregular ala, the shield plates have knobs at the center, the triradiate plates show a “Y”‐shaped keel, and the walls of plates and ala show minute granules. Tetraparma insecta was distributed widely in the study area and was relatively abundant, reaching a density of 4 × 10⁴·L^?1, with an evident preference for subsurface waters (10–20 m depth), whereas T. laevis form mexicana was rare and scarce. Both species seem to be restricted to tropical–subtropical waters. We discuss the taxonomy of Parmales, especially concerning the category of subspecies within the group. Parmales is a widespread group in cold and tropical waters.     

A new tritoniid species (Mollusca: Opisthobranchia) from Bouvet Island

Tritoniid sea slugs (Mollusca, Gastropoda, Opisthobranchia) are reported for the first time from Bouvet Island. Tritonia dantarti sp. n. shows morphological and anatomical differences with regard to the two previously known tritoniids reported from Antarctica and Sub-Antarctica, Tritonia vorax (Odhner 1926) and Tritonia challengeriana Bergh, 1884. Regarding the external morphology, T. dantarti sp. n. is characterized by a very bright orange coloration in the dorsum, white dorsal crests, highly ramified dendritic gills (the largest vertically orientated and the rest laterally orientated), and a quadrangular cross section. The radula presents very long, thin lateral teeth and the jaws present mainly unicuspidate, striated denticles. The seminal receptacle is large, pear-shaped and its grey pigmentation differs from the rest of the genital system. The Antarctic species T. challengeriana was also found in waters off Bouvet Island, while the Subantarctic species T. vorax was not found.     

Freshwater fugu or pufferfishes of the genusTetraodon from the Mekong basin, with descriptions of two new species

The fresh waters of the Mekong basin are inhabited by five species of the pufferfish genusTetraodon Linnaeus, 1758 (sensu lato): the widely distributedT. leiurus Bleeker, 1851; two previously described species endemic to the Mekong,T. baileyi Sontirat, 1989 andT. suvattii Sontirat & Soonthornsathit, 1985; one new species endemic to the Mekong basins.Tetraodon baileyi has now been collected numerous times but only in or near rapids;T. abei, T. barbatus andT. suvattii are often but not exclusively associated with rapids or at least swift flowing streams; whileT. leiurus is found in almost all habitats except rapids.Tetraodon abei andT. barbatus are closely related toT. leiurus, from which they differ most strikingly in coloration.Tetraodon survattii differs from all of the others in having a strongly upturned mouth and light and dark stripes or spots radiating outwards from the eye.Tetraodon baileyi, the most distinctive Mekong pufferfish, has head and body more or less extensively covered with dermal cirri and is entirely scaleless.     

Empruthotrema kearni n. sp. and observations on Thaumatocotyle pseudodasybatis Hargis, 1955 (Monogenea: Monocotylidae) from the nasal fossae of Aetobatus narinari (Batiformes: Myliobatidae) from Moreton Bay,Queensland

Empruthotrema kearni n. sp. and Thaumatocotyle pseudodasybatis Hargis, 1955 (Monogenea: Monocotylidae) are reported from the nasal fossae of the spotted eagle ray, Aetobatus narinari Euphrasen, 1790, from Moreton Bay, Queensland, Australia. The discovery of E. kearni n. sp. is the first record of this genus from the Myliobatidae and a new geographical record for the genus. A comparison of T. pseudodasybatis from Florida, USA and from Queensland, Australia revealed morphometrical and microhabitat differences. The discovery of T. pseudodasybatis in Australian waters is a new geographical record for this species.     

Trichosporon siamense sp. nov. isolated from insect frass in Thailand

A strain of yeast isolated from insect frass collected in Thailand was found to represent a hitherto undescribed species of a basidiomycetous anamorphic genus Trichosporon. It is described as Trichosporon siamense. In the phylogenetic tree based on the D1/D2 region sequences of 26S rDNA, this yeast constitutes a cluster with several Q-9 having species of Trichosporon including T. otae and T. brassicae but is clearly differentiated from these species by 1.8% or more base substitutions. In the internal transcribed spacer region (ITS1 and ITS2), this species differs from T. scarabaeorum, the nearest species, by 6.5% base substitution.     

Morphological and electrophoretic studies of the genus Themisto (Amphipoda: Hyperiidea) from the South and North Atlantic

Summary The genus Themisto is represented in Atlantic Ocean waters by four different species: T. compressa, T. abyssorum, and T. libellula in the northern hemisphere and T. gaudichaudii in the southern hemisphere. Examination of morphological and electrophoretic characters has revealed that T. gaudichaudii, which was previously thought to have a bipolar distribution, in fact consist of separate species in Arctic and Antarctic waters, respectively. The Antarctic species remains as T. gauchichaudii Guérin 1828 and the oldest available name for the Arctic species is T. compressa Goes 1865. The results of the study also indicate that morphological variation within T. gaudichaudii (e.g. the compressa and bispinosa forms) is more likely to be the result of environmental influences rather than genetic differences. Electrophoretic analyses of genetic variation indicate that T. gaudichaudii from waters adjacent to both South Georgia Island and the South Shetland Islands belong to the same interbreeding population. Similar observations of homogeneity in other Antarctic pelagic animals suggest that the Antarctic circumpolar current systems promote effective genetic exchange and reduce the possibility of formation of distinct local breeding populations.     

Occurrence of Cladocera (Crustacea) in subterranean waters in Yugoslavia

Contrary to some localities in France and Spain, Cladocera occur in hypogean waters in Yugoslavia very sporadically. Beside the stygobitic species, Alona hercegovinae from caves and Alona smirnovi from interstitial waters, particularly some other Chydoridae seem to be suited for hypogean life. Chydorus sphaericus, reputed as one of the most euryoecious cladocerans, occurs also the deepest in interstitial waters as well as in caves. Other species, found in hypogean waters are Simocephalus vetulus, Ilyocryptus sordidus, Eurycercus lamellatus, Chydorus ovalis, Leydigia leydigi, Acroperus harpae and Biapertura affnis.     

Description of a new species of giant clam (Bivalvia: Tridacnidae) from Ningaloo Reef,Western Australia

A new species of giant clam from northern Australian coastal waters is distinguished principally on genetic evidence. Of Recent tridacnids, Tridacna ningaloo n. sp. is morphologically closest to the most widespread species in the Indo-Pacific, Tridacna maxima (Röding, 1798), yet genetically closest to the species pair T. squamosa Lamarck, 1819 plus T. crocea Lamarck, 1819. Genotype data are provided for the type material of T. ningaloo n. sp. The greatest significance of this new, cryptic species is that it casts doubt on the correctness of the ‘historical’ giant clam species defined solely on conchological characters, particularly T. maxima. This paper supports the retention of all giant clams in the family Tridacnidae, as distinct from the Cardiidae, because of their numerous morphological apomorphies, specialised ecological niche, and independent acquisition of symbiotic zooxanthellae.     

Morphology and molecular phylogeny of Thalassiosira sinica sp. nov. (Bacillariophyta) with delicate areolae and fultoportulae pattern

Thalassiosira Cleve is one of the most species-rich marine diatom genera. Previous studies have mainly focused on polar and temperate areas, but recent studies on material from Asian waters suggested that a high and undescribed species diversity of Thalassiosira occurs in Asia. On the basis of plankton samples collected from the South China Sea, a new species, T. sinica sp. nov. Y. Li & Y. Q. Guo is described. The morphology of the cells was examined by light and scanning electron microscopy. The hypervariable region of the nuclear large-subunit ribosomal DNA and the relatively conserved region of the nuclear small-subunit ribosomal DNA were sequenced for information on phylogenetic relationships. The living cells are usually solitary and drum-shaped. The areolae on the valve are delicate, small and arranged in fascicles. In addition to a regular ring of marginal fultoportulae on the valve edge, T. sinica possesses one central fultoportula and a number of fultoportulae arranged into 2–3 irregular rings on the valve face. A rimoportula located inside the ring of marginal fultoportulae possesses a long and strong external tube. The valvocopula and the copulae have rows of pores, but the pores on the valvocopula are larger than those on the copulae. Thalassiosira sinica appears to be included in subgroup C sensu Gedde because of a rimoportula with a distinct external tube located on the valve face. The molecular phylogeny, inferred from both SSU and LSU sequences, does, however, not support the validity of subgroup C, as the closest allies of T. sinica here turned out to be T. diporocyclus and T. lundiana, species in which the rimoportulae are located on the valve margin.     

DNA barcoding revealed a wider distribution of Alburnoides holciki (Teleostei: Leuciscidae) in the inland waters of Uzbekistan

Alburnoides holciki Coad & Bogutskaya, 2012 was originally described to be found in the Hari River basin. So far, this species is known to occur in tributaries of the Hari River in Afghanistan, Iran and Turkmenistan, and also in the upper reaches of the Amu Darya in Tajikistan. Populations from the inland waters of Uzbekistan were previously considered as A. eichwaldii. Our study recognized specimens of Alburnoides from the inland waters of Uzbekistan as A. holciki based on both morphological data and the molecular data. The novelty of the study is the confirmation of A. holciki for the inland waters of Uzbekistan, which constitutes the northernmost record of this species.