Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data

Doradidae is a putatively monophyletic group of South American freshwater catfishes containing 30 extant genera and 72 valid species. Only one study to date has attempted to estimate phylogenetic relationships among doradids. This morphological analysis partitioned species into two basal genera ( Wertheimeria and Francisodoras ) and a crown group of three subfamilies (Platydoradinae, Astrodoradinae and Doradinae) whose relationships were unresolved. No subsequent work has been done to resolve the subfamilial trichotomy or to assess whether postulated intergeneric relationships are accurate. We address this problem with complete sequences (2.5 kilobases, kb) of mitochondrial 12S and 16S rRNA genes and partial (1.3 kb) sequences of the nuclear elongation factor-1 alpha (EF1α) gene from representatives of 23 doradid genera (43 species) and 13 outgroups from additional siluriform families. Phylogenetic analysis of these data yields strong support for the monophyly of Doradidae and Astrodoradinae (as well as other relationships), but otherwise shows significant conflict with morphological results. A partial re-examination of published morphological data indicates that many characters may have been incorrectly polarized and many taxa have incorrect state assignments. Our results provide a framework for ongoing efforts to describe the species-level diversity of this poorly understood neotropical family.  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 140 , 551–575.     

Morphological analysis, phylogenies and classification in Velloziaceae

A morphological (non-molecular) cladistic analysis of the Velloziaceae is presented. The terminal taxa are 47 species of Velloziaceae plus four taxa as outgroups: Acanthochlamys bracteata (Acanthochlamydaceae), Encholirium scrutor (Bromeliaceae), Thoracocarpus bissectus (Cyclanthaceae) and Pandanus racemosus (Pandanaceae). The species of Velloziaceae sampled represent a significant proportion of the morphological diversity of the family, including all recognized genera and sections. The analysis revealed two major groups within Velloziaceae, supported mainly by stomata, vascular bundles in the pedicel, aquiferous tissues, filaments, anthers, pollen, stigma, seeds, ploidy and chemical characters. Comparison between this and the previous phylogenetic hypotheses for Velloziaceae, together with the two conflicting current classifications, suggests that there is incompatibility concerning the support of current genera and sections. The only three groups supported in all phylogenies are Barbacenioideae sensu Menezes (= Barbacenia sensu Smith & Ayensu), Xerophyta sect. Barbacenioides and Xerophyta sect. Xerophyta sensu Smith & Ayensu.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 157–173.     

Taxonomic significance of pollen types in the Guyana Highland-centred composite genera of Mutisioideae (Asteraceae)

The Guyana Highland-centred genera, or Stenopadus group, are a complex of species that belong to the tribes Mutisieae and Stifftieae of Asteraceae. The pollen morphologies of 29 species, from 12 of 13 genera of this complex, are described and illustrated using light and scanning electron microscopy. The exine sculpture and structure are highly significant. Four exine types, previously characterized, were distinguished: Gongylolepis , Wunderlichia , Mutisia , and Stenopadus . The characterization of the Stenopadus exine type is enlarged here. These exine types led to the recognition of four well-defined pollen types, whereas the spine length and exine thickness characterized six subtypes. Pollen types circumscribe genera or groups of genera, and some subtypes distinguish species. The pollen morphology within the complex is discussed in relation to the rest of Mutisioideae and other palynologically allied tribes of Cichorioideae. There is little correlation between pollen types and tribes; only the Stenopadus exine type is exclusive to the Stifftieae tribe. The remaining types are shared by the two tribes of the complex. Pollen morphology supports the hypothesis that this group of genera is close to the Gochnatia complex and the Cardueae tribe.  © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 156 , 327–340.     

Killickia (Lamiaceae): a new genus from KwaZulu-Natal, South Africa

The genus Killickia is described to accommodate the South African endemic species formerly placed in Micromeria sect. Hesperothymus . Morphological data, as well as results from unpublished phylogenetic studies support its separation from the genera Micromeria and Clinopodium . A new species Killickia lutea Bräuchler is described and three new combinations are made. Killickia is characterised as comprising solitary- or few-flowered cymes, a campanulate to subcampanulate (obconical) calyx with similar teeth, a corolla tube with two pubescent ridges and nutlets with scattered minute hairs. A thickened marginal vein in the leaves as typical for Micromeria is absent. As currently understood all species are restricted to the Drakensberg mountains and KwaZulu-Natal Midlands in eastern South Africa. A key to the species, brief notes on anatomy and ecology are provided.  © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 157 , 575–586.     

Diel activity and reproductive isolation in a diverse assemblage of Neotropical skippers (Lepidoptera: Hesperiidae)

A sample of over 400 co-occurring species of Neotropical Hesperiidae attracted to artificial lures was used to test for temporal structure among species and explore potential consequences of temporal partitioning within assemblages. Five years of intermittent transect samples at the same site revealed that diel activity was significantly partitioned among subfamilies, genera and species within this species assemblage. Calculations of reproductive isolation indicate that partitions in activity times are sufficient to provide significant prezygotic reproductive isolation among some congeneric species pairs. Temporal patterns in this assemblage are considered in light of field observations and temporal partitions are examined as a potential isolating barrier among insects.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society 2008, 94 , 723–736.     

Interspecific variation of acoustic signals in Mediterranean gobies (Perciformes, Gobiidae): comparative analysis and evolutionary outlook

Sound production of 11 Mediterranean goby species, belonging to five different genera, have been comparatively analysed on the basis of the quantitative properties of the acoustic signal emitted by the male in both the reproductive and aggressive context. The results obtained showed that three groups of species can be recognized on the basis of signal similarity: the larger sized species (genus Padogobius and Gobius paganellus ) producing tonal sounds, showing high values of pulse rate and low values of duration; the larger-sized species producing grunt sounds (genus Gobius and Zosterisessor ) with low pulse rate and low duration; and the small-sized species producing grunt sounds (genus Pomatoschistus and Knipowitschia ) with low pulse rate and high duration. The comparison between these results and those found in previous studies suggests congruence between the acoustic affinities among species and that obtained by means of morphological and genetic data. Furthermore, first hypotheses on the evolution of acoustic communication and the associated mechanisms in this fish group are suggested.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 763–778.     

Karyological studies in Jaborosa (Solanaceae)

Sixteen species of Jaborosa (Solanaceae), including eight endemic to Argentina, were studied karyologically. The numbers n  = 12 and/or 2n  = 24 were found in all species, the majority of the cases being new reports. Mitotic chromosomes were small- to medium-sized, the average length varying from 2.95 to 4.93 µm. All species had one to three chromosome pairs with satellites. The karyotypes, obtained for 13 species, were slightly asymmetrical: A ₁ ranged from 0.228 to 0.483, A ₂ ranged from 0.095 to 0.182, and Paszko's asymmetry index ranged from 0.84 to 3.47. In all species, metacentric chromosomes were the most common, followed by submetacentrics, but subtelocentrics were rare. Morphological similarities and sectional arrangements were not reflected in either a principal components analysis plot or asymmetry index plot, but the species could be singled out by their karyotype formulae and the different karyotype parameters taken. In Jaborosa , a notably diversified genus, exo-morphological evolution has taken place, together with evident chromosome rearrangements, whose disposition is different and not as clear as in related genera.  © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 156 , 467–478.     

Python phylogenetics: inference from morphology and mitochondrial DNA

We used nucleotide sequences from four mitochondrial genes and structural features of the mitochondrial control region, combined with a revised, previously published, morphological data set to infer phylogenetic relationships among the pythons. We aimed to determine which of two competing hypotheses of relationships of the genera Aspidites and Python best explains the evolutionary and bioegeographical history of the family. All analyses of the combined data recover a set of relationships in which (1) the genus Python is paraphyletic with the two east Asian species, P. reticulatus and P. timoriensis , as the sister lineage to the seven Australo-Papuan python genera. We support recognition of a distinct genus for the P. reticulatus  +  P. timoriensis clade; (2) the remaining species of the genus Python form a clade which is the sister lineage to the remainder of the family; (3) the genus Aspidites is embedded among the Australo-Papuan genera. The seemingly primitive characteristics of Aspidites may be better interpreted as reversals or specializations that have accompanied a switch to burrowing in this genus. Resolution of the relationships among the Australo-Papuan lineages is weak, possibly because of rapid diversification early in the history of the radiation. We assessed the tempo of the Indo-Australian python radiation using a maximum likelihood framework based on the birth–death process. We find strong support for elevated speciation rates during the period when Australia collided with the proto-Indonesian archipelago. The data support an origin for pythons outside Australia, followed by a radiation into Australia during the mid-Tertiary.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 603–619.     

Molecular phylogeny of New World sheath-tailed bats (Emballonuridae: Diclidurini) based on loci from the four genetic transmission systems in mammals

Multiple unlinked loci are surveyed in a methodological approach for mammalian systematics that uses genes from the four pathways of genetic transmission: mitochondrial, autosomal, and X and Y sex chromosomes. Each of these components has different properties, such as effective population size, mutation rate, and recombination, that result in a robust hypothesis of evolutionary history. The utility of this experimental design is tested with bats in the family Emballonuridae and the hypothesis that the New World taxa are monophyletic. Parsimony and Bayesian analyses of the individual data sets give generally congruent topologies with high bootstrap proportions and posterior probabilities for monophyletic clades representing species and genera. The mitochondrial gene has significantly faster rates of substitution, higher levels of homoplasy, and a greater degree of saturation than the nuclear genes that contributed to the loss of phylogenetic signal at deeper branches of the tree. However, there is better resolution and support for the more slowly evolving nuclear introns including a New World clade, indicating a single origin of emballonurid bats in the Neotropics (tribe Diclidurini). One novel subtribe has a hard basal polytomy that is unresolved for all of the nuclear partitions, suggesting a rapid burst of evolution during the diversification of genera.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 189–209.     

Cytotaxonomy of Lychnophoriopsis Sch.Bip. and Paralychnophora MacLeish species (Asteraceae: Vernonieae: Lychnophorinae)

The genera Lychnophoriopsis and Paralychnophora are endemic to Brazilian 'campo rupestre' in the States of Minas Gerais and Bahia. To analyse the status of the cytotaxonomy of these genera, we carried out chromosome counts on several species. Two chromosome numbers were obtained for four species of Paralychnophora : 2 n  = 36 and 2 n  = 38. For three species of Lychnophoriopsis , only 2 n  = 36 was observed. The chromosome size (1.0–2.58 µm) and morphology (mainly metacentric, with some submetacentric) were analysed in four species of Paralychnophora and showed relative constancy .   © 2007 The Linnean Society of London. Botanical Journal of the Linnean Society , 2007, 154 , 109–114.     

Small-scale spatial genetic structure in an ant species with sex-biased dispersal

In a population of the monogynous, polyandrous ant Cataglyphis cursor , we analysed the spatial genetic structure of queens, colony fathers and workers at a microgeographical scale to infer the extent of sex-biased dispersal and to assess the impact of limited dispersal on the patterns of relatedness within the colony. To this end, four microsatellite markers were scored for the queen and an average of 26 workers from each of 35 mapped colonies. We used pair-wise kinship coefficients between all pairs of genotypes, including the reconstructed colony father genotypes (1) to test and quantify isolation by distance patterns within each sex or caste through the analysis of kinship–distance curves, and (2) to compute the average relatedness between categories of colony members. The kinship–distance curve was much steeper for colony queens than colony fathers, indicating male-biased dispersal. However, colony fathers also displayed a non-random spatial genetic structure, so that even males show some dispersal limitation at the scale of the population, which extends over less than 250 m. The degree of relatedness between the different sexes and castes of colonies was well predicted from the number of mates per queen and the inbreeding of queens, and the impact of limited dispersal was very weak at this scale of observation. We discuss the interest of kinship–distance curves to assess sex-biased dispersal on a local scale and we compare our results with large-scale analyses of genetic structure in Cataglyphis cursor and other monogynous ant species.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 465–473.     

Neotropical ennomine moths: a review of the genera (Lepidoptera: Geometridae)

The classification of the Neotropical genera of the Ennominae is reviewed and 267 genera are recognised to occur in this region. Three new genera are described and three others are reinstated, while 48 generic synonyms are newly established. Other changes established in this work include 14 species synonyms and 237 new or reinstated combinations. External features and genitalia of representative members of the genera are illustrated (753 figures). All the known Neotropical species and subspecies of Ennominae are listed ( c . 3470), plus their synonyms. The tribes to which the genera belong are assessed, with c . 200 of the genera assigned to tribe or other suprageneric grouping.  © 2002 The Linnean Society of London, Zoological Journal of the Linnean Society , 2002, 135 , 121–401.     

Phylogeny of the pollinating yucca moths, with revision of Mexican species (Tegeticula and Parategeticula; Lepidoptera, Prodoxidae)

The yucca moths ( Tegeticula and Parategeticula ; Lepidoptera, Prodoxidae) are well known for their obligate relationship as exclusive pollinators of yuccas. Revisionary work in recent years has revealed far higher species diversity than historically recognized, increasing the number of described species from four to 20. Based on field surveys in Mexico and examination of collections, we describe five additional species: T. californica Pellmyr sp. nov. , T. tehuacana Pellmyr & Balcázar-Lara sp. nov. , T. tambasi Pellmyr & Balcázar-Lara sp. nov., T. baja Pellmyr & Balcázar-Lara sp. nov. and P. ecdysiastica Pellmyr & Balcázar-Lara sp. nov . Tegeticula treculeanella Pellmyr is identified as a junior synonym of T. mexicana Bastida. A diagnostic key to the adults of all species of the T. yuccasella complex is provided. A phylogeny based on a 2104-bp segment of mitochondrial DNA (mtDNA) in the cytochrome oxidase I and II region supported monophyly of the two pollinator genera, and strongly supported monophyly of the 17 recognized species of the T. yuccasella complex. Most relationships are well supported, but some relationships within a recent and rapidly diversified group of 11 taxa are less robust, and in one case conflicts with a whole-genome data set (amplified fragment length polymorphism, AFLP). The current mtDNA-based analyses, together with previously published AFLP data, provide a robust phylogenetic foundation for future studies of life-history evolution and host interactions in one of the classical models of coevolution and obligate mutualism.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 152 , 297–314.     

Lineage specific evolution of an alternative social strategy in Tetramorium ants (Hymenoptera: Formicidae)

The western Palearctic ant, Tetramorium moravicum , is the only species of the large genus known to display two alternative social strategies: macrogyny-monoygyny (characterized by one large queen per colony) and microgyny-polygyny (multiple small queens per colony). The microgyne colonies of this ant are confined to the westernmost part of its distribution area and occasionally co-occur with macrogyne colonies. We investigated phylogenetic and geographical patterns in relation to social strategy by analysing 1031 bp of the mitochondrial cytochrome c oxidase subunit I gene of T. moravicum from the entire known species range. Phylogenetic analyses revealed two clear-cut lineages coinciding with the eastern and western populations, which probably were separated after the late Quaternary glacial periods. Geographical distance analysis suggested allopatric fragmentation of the two lineages. We hypothesize that the two lineages colonized Central Europe postglacially from two directions. The current distribution gap of 500 km between the tip of the eastern lineage, in the Czech Republic, Austria and Hungary, and the western lineage, in Germany, was confirmed by hierarchical population analysis. Macrogyny-monogyny probably was the original condition in T. moravicum ; the alternative strategy of microgyny-polygyny may have evolved at the tip of the western lineage, as recently as the early Holocene.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 91 , 247–255.     

Phylogeny of Labidodemas and the Holothuriidae (Holothuroidea: Aspidochirotida) as inferred from morphology

The Holothuriidae is one of the three established families within the large holothuroid order Aspidochirotida. The approximately 185 recognized species of this family are commonly classified in five nominal genera: Actinopyga , Bohadschia , Holothuria , Pearsonothuria and Labidodemas. Maximum parsimony analyses on morphological characters, as inferred from type and nontype material of the five genera, revealed that Labidodemas comprises highly derived species that arose from within the genus Holothuria . The paraphyletic status of the latter, large (148 assumed valid species) and morphologically diverse genus has recently been recognized and is here confirmed and discussed. Nevertheless, we adopt a Darwinian or eclectic classification for Labidodemas , which we retain at generic level within the Holothuriidae. We compare our phylogeny of the Holothuriidae with previous classifications of its genera and subgenera, and make suggestions concerning possible systematic changes.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 144 , 103−120.     

A new species of the genus Lightiella: the first record of Cephalocarida (Crustacea) in Europe

A new species of Cephalocarida belonging to the genus Lightiella is described. Like all known species of Lightiella , the new species is characterized by reduction of trunk segment 8, which also lacks both pleura and thoracopods. The diagnostic characters of the species are: (1) one seta on the inner distal corner of the penultimate endopodal segment of second maxilla and thoracopods 1–5; (2) only one claw on the distal segment of the endopod of thoracopod 6. A cladistic analysis of 27 morphological characters was used to estimate the phylogeny of all species of Lightiella , with all other cephalocarid species used as outgroups. The discovery of this species in the Mediterranean fills a gap in the distribution of the genus and of the entire class.  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 148 , 209–220.     

Chromosome numbers in the tribes Anthemideae and Inuleae (Asteraceae)

Twenty-two chromosome counts of 19 taxa (21 populations) in the tribe Anthemideae and one member (one population) of the tribe Inuleae of the family Asteraceae are reported. The Anthemideae studied belong to the subtribes Artemisiinae (14 Artemisia taxa, and one species each of the genera Dendranthema , Filifolium and Neopallasia ) and Tanacetinae (one species each of the genera Lepidolopha and Tanacetopsis ). From the Inuleae, we studied one Inula species. Five counts are new reports (including two at generic level), six are not consistent with previous counts and the remainder are confirmations of very limited (one to four records) previous data. Most of populations of Anthemideae studied have the basic chromosome number x  = 9, with ploidy levels ranging from 2 x to 10 x . Dysploidy is also present, with two x  = 8 diploid taxa. The species of Inuleae studied is a diploid with x  = 10, also indicating dysploidy, other members of the same genus Inula having basic numbers of x  = 9 or 8.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 77–85.