Do cleaning organisms reduce the stress response of client reef fish?

Background

Marine cleaning interactions in which cleaner fish or shrimps remove parasites from visiting 'client' reef fish are a textbook example of mutualism. However, there is yet no conclusive evidence that cleaning organisms significantly improve the health of their clients. We tested the stress response of wild caught individuals of two client species, Chromis dimidiata and Pseudanthias squamipinnis, that had either access to a cleaner wrasse Labroides dimidiatus, or to cleaner shrimps Stenopus hispidus and Periclimenes longicarpus, or no access to cleaning organisms.

Results

For both client species, we found an association between the presence of cleaner organisms and a reduction in the short term stress response of client fish to capture, transport and one hour confinement in small aquaria, as measured with cortisol levels.

Conclusion

It is conceivable that individuals who are more easily stressed than others pay a fitness cost in the long run. Thus, our data suggest that marine cleaning mutualisms are indeed mutualistic. More generally, measures of stress responses or basal levels may provide a useful tool to assess the impact of interspecific interactions on the partner species.     

A high-throughput apple SNP genotyping platform using the GoldenGate™ assay

EST data generated from 14 apple genotypes were downloaded from NCBI and mapped against a reference EST assembly to identify Single Nucleotide Polymorphisms (SNPs). Mapping of these SNPs was undertaken using 90% of sequence similarity and minimum coverage of four reads at each SNP position. In total, 37,807 SNPs were identified with an average of one SNP every 187 bp from a total of 6888 unique EST contigs. Identified SNPs were checked for flanking sequences of ≥ 60 bp along both sides of SNP alleles for reliable design of a custom high-throughput genotyping assay. A total of 12,299 SNPs, representing 6525 contigs, fit the selected criterion of ≥ 60 bp sequences flanking a SNP position. Of these, 1411 SNPs were validated using four apple genotypes. Based on genotyping assays, it was estimated that 60% of SNPs were valid SNPs, while 26% of SNPs might be derived from paralogous regions.     

Mediterranean island biodiversity and climate change: the last 10,000 years and the future

Mediterranean islands (MI) are hotspots of global biodiversity and lie in one of the most susceptible to climate change (CC) areas of the world; a big challenge for any conservation strategy. In fact, there is already increasing evidence for CC in the region and associated biological responses in MI ecosystems. These include phenological changes and upward elevation shifts of species and plant communities; although evidence is frequently contrasting for different taxa. Threats are also evident, mainly for endemic species from most taxonomic groups, while communities in mountain and coastal regions are likely to be affected most. For MI conservation under CC additional factors need to be considered: (i) their position at the crossroads of three continents; with which they share common environmental characteristics, (ii) their great variability in sizes and topography and (iii) their climatic differences; with a clear west-east basin divide. CC synergies with changing tourist aspiration and agricultural practices will, in the medium term, modify island landscapes and provide further challenges for biodiversity conservation. Such a combined impact from CC, land-use change, fragmentation of habitats and tourism is difficult to predict. Furthermore, the limited space on islands (especially habitat availability and climatic range limitations) imposes a barrier to species range expansion. Thus, conservation of MI biodiversity under CC requires: (i) future research to focus on improved climate predictions linked to improved understanding of ecological (climate-biotic) responses, incorporating lessons learnt from (island) biogeography, (ii) specific adaptation measures for spatial planning and improvement in regional institutional capacities.     

Determinants of the steep species–area relationship of coral reef fishes

The increase in species richness with area is known as the species–area relationship (SPAR). Although several mutually non-exclusive processes may produce the SPAR, the null, often ignored, hypothesis states that a SPAR can be generated by random placement alone. The log–log-transformed SPAR of coral reef fishes on small patch-reefs revealed a steep slope of 0.55. However, this slope was dependent on the cumulative area of the reef examined and was therefore affected by random placement. After statistically removing the contribution of random placement from the SPAR, the slope was estimated to be 0.21. This is consistent with estimates from other, mostly terrestrial, systems. Furthermore, a randomization procedure, where the probability of fishes to reach a patch was proportional to reef area, showed that the field measured SPAR did not differ from random placement. In addition, fish assemblages on species poor reefs did not form subsets of species rich reefs (i.e., no nestedness) beyond that expected from random placement. Steep log–log-transformed SPARs can be formed by random placement alone, indicating that caution should be used when assigning an ecological meaning to SPARs generated from small spatial scales.     

Assessing the ‘deep reef refugia’ hypothesis: focus on Caribbean reefs

Coral reefs in shallow-water environments (<30 m) are in decline due to local and global anthropogenic stresses. This has led to renewed interest in the ‘deep reef refugia’ hypothesis (DRRH), which stipulates that deep reef areas (1) are protected or dampened from disturbances that affect shallow reef areas and (2) can provide a viable reproductive source for shallow reef areas following disturbance. Using the Caribbean as an example, the assumptions of this hypothesis were explored by reviewing the literature for scleractinian corals—the reef framework builders on tropical reefs. Although there is evidence to support that deep reefs (>30 m) can escape the direct effects of storm-induced waves and thermal bleaching events, deep reefs are certainly not immune to disturbance. Additionally, the potential of deep reefs to provide propagules for shallow reef areas seems limited to ‘depth-generalist’ coral species, which constitute only ~25% of the total coral biodiversity. Larval connectivity between shallow and deep populations of these species may be further limited due to specific life history traits (e.g., brooding reproductive strategy and vertical symbiont acquisition mode). This review exposes how little is known about deep reefs and coral reproduction over depth. Hence, a series of urgent research priorities are proposed to determine the extent to which deep reefs may act as a refuge in the face of global reef decline.     

Metacommunity,mainland‐island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape

Understanding the regional dynamics of plant communities is crucial for predicting the response of plant diversity to habitat fragmentation. However, for fragmented landscapes the importance of regional processes, such as seed dispersal among isolated habitat patches, has been controversially debated. Due to the stochasticity and rarity of among‐patch dispersal and colonization events, we still lack a quantitative understanding of the consequences of these processes at the landscape‐scale. In this study, we used extensive field data from a fragmented, semi‐arid landscape in Israel to parameterize a multi‐species incidence‐function model. This model simulates species occupancy pattern based on patch areas and habitat configuration and explicitly considers the locations and the shapes of habitat patches for the derivation of patch connectivity. We implemented an approximate Bayesian computation approach for parameter inference and uncertainty assessment. We tested which of the three types of regional dynamics – the metacommunity, the mainland‐island, or the island communities type – best represents the community dynamics in the study area and applied the simulation model to estimate the extinction debt in the investigated landscape. We found that the regional dynamics in the patch‐matrix study landscape is best represented as a system of highly isolated ‘island’ communities with low rates of propagule exchange among habitat patches and consequently low colonization rates in local communities. Accordingly, the extinction rates in the local communities are the main drivers of community dynamics. Our findings indicate that the landscape carries a significant extinction debt and in model projections 33–60% of all species went extinct within 1000 yr. Our study demonstrates that the combination of dynamic simulation models with field data provides a promising approach for understanding regional community dynamics and for projecting community responses to habitat fragmentation. The approach bears the potential for efficient tests of conservation activities aimed at mitigating future losses of biodiversity.     

Changes in coral reef communities among the Florida Keys, 1996–2003

Hard coral (Scleractinia and Milleporina) cover data were examined from 37 sites surveyed annually from 1996 to 2003 in the Florida reef tract, USA. Analyses of species numbers and total cover showed that site-to-site differences were generally very much greater than differences among times within sites. There were no significant differences among different geographical areas within the reef tract (Upper, Middle and Lower Keys). Large-scale changes documented included a reduction in species numbers and total cover on both deep and shallow offshore reefs between 1997 and 1999 followed by no recovery in cover, and only scant evidence of any recovery in species numbers by 2003. These changes coincided with bleaching events in 1997 and 1998, and the passage of Hurricane Georges through the Lower Keys in 1998. The lack of recovery among offshore reefs suggests that they were no longer resilient. Multivariate analyses revealed that some sites showed relatively little temporal variation in community composition, essentially random in direction, while others showed relatively large year-on-year changes. There was little evidence of any major region-wide changes affecting assemblage composition, or of any events that had impacted all of the sampling sites in any single year. Instead, different sites exhibited differing patterns of temporal variation, with certain sites displaying greater variation than others. Changes in community composition at some sites are interpreted in the light of knowledge of events at those sites and the relative sensitivities of species to various stressors, such as changes in cover of Acropora palmata and Millepora complanata at Sand Key following the bleaching events and hurricane in 1998, and declines in Montastraea annularis at Smith Shoal following a harmful algal bloom in 2002. For most sites, however, it is impossible to determine the causes of observed variation.     

Does the skeleton of a sponge provide a defense against predatory reef fish?

Sponge tissue often contains two structural components in high concentrations: spicules of silica, and refractory fibers of protein (spongin). Some terrestrial plants contain analogous structures, siliceous inclusions and refractory lignins, that have been demonstrated to deter herbivory. We performed feeding experiments with predatory reef fish to assess the deterrent properties of the structural components of three common Caribbean demosponges, Agelas clathrodes, Ectyoplasia ferox, and Xestospongia muta. The concentrations of spicules and spongin in the tissues varied widely between the three species, but when assayed at their natural volumetric concentrations, neither spicules (all three species assayed) nor the intact spiculated spongin skeleton (A. clathrodes and X. muta assayed) deterred feeding by reef fish in aquarium or field assays using prepared foods of a nutritional quality similar to, or higher than, that of sponge tissue. Spicules deterred feeding in aquarium assays when incorporated into prepared foods of a nutritional quality lower than that of sponge tissue (15–19 times less protein), but spiculated spongin skeleton was still palatable, even in prepared foods devoid of measurable protein, and even though spicules embedded in spongin were oriented in their natural conformation. Based on comparisons of the nutritional qualities of the tissues of the three sponge species and of the prepared foods, sponge tissue would have to be much lower in food value (5 times less protein or lower) for spicules to provide an effective defense, and spicules in combination with the spongin skeleton would be unlikely to provide an effective defense regardless of the nutritional quality of the tissue. Unlike terrestrial plants, marine sponges may use silica and refractory fibers solely for structural purposes.     

Genetic structure of the Canarian palm tree (Phoenix canariensis) at the island scale: does the ‘island within islands’ concept apply to species with high colonisation ability?

• Oceanic islands are dynamic settings that often promote within‐island patterns of strong population differentiation. Species with high colonisation abilities, however, are less likely to be affected by genetic barriers, but island size may impact on species genetic structure regardless of dispersal ability.
• The aim of the present study was to identify the patterns and factors responsible for the structure of genetic diversity at the island scale in Phoenix canariensis, a palm species with high dispersal potential. To this end, we conducted extensive population sampling on the three Canary Islands where the species is more abundant and assessed patterns of genetic variation at eight microsatellite loci, considering different within‐island scales.
• Our analyses revealed significant genetic structure on each of the three islands analysed, but the patterns and level of structure differed greatly among islands. Thus, genetic differentiation fitted an isolation‐by‐distance pattern on islands with high population densities (La Gomera and Gran Canaria), but such a pattern was not found on Tenerife due to strong isolation between colonised areas. In addition, we found a positive correlation between population geographic isolation and fine‐scale genetic structure.
• This study highlights that island size is not necessarily a factor causing strong population differentiation on large islands, whereas high colonisation ability does not always promote genetic connectivity among neighbouring populations. The spatial distribution of populations (i.e. landscape occupancy) can thus be a more important driver of plant genetic structure than other island, or species′ life‐history attributes.

     

Prediction of the tertiary structure of parathyroid-hormone-related protein (residues 1–34) by the island model

Prediction of the tertiary structure of a 34 residue N-terminal fragment of parathyroid-hormone-related protein was carried out by the island model. This peptide is known as a major causative agent of humoral hypercalcemia of malignancy, but structural information studied by X-ray diffraction has not been reported. We adopted the secondary structure determined by NMR and packed on the basis of island model of protein folding developed by us. Predicted structure is discussed in connection with the interaction of active sites.     

Chemically cued suppression of coral reef resilience: Where is the tipping point?

Coral reefs worldwide are shifting from high-diversity, coral-dominated communities to low-diversity systems dominated by seaweeds. This shift can impact essential recovery processes such as larval recruitment and ecosystem resilience. Recent evidence suggests that chemical cues from certain corals attract, and from certain seaweeds suppress, recruitment of juvenile fishes, with loss of coral cover and increases in seaweed cover creating negative feedbacks that prevent reef recovery and sustain seaweed dominance. Unfortunately, the level of seaweed increase and coral decline that creates this chemically cued tipping point remains unknown, depriving managers of data-based targets to prevent damaging feedbacks. We conducted flume and field assays that suggest juvenile fishes sense and respond to cues produced by low levels of seaweed cover. However, the herbivore species we tested was more tolerant of degraded reef cues than non-herbivores, possibly providing some degree of resilience if these fishes recruit, consume macroalgae, and diminish negative cues.     

Morphological variation and population structure on the island of Korčula,Yugoslavia

A comparison of head and body morphology on the ecologically uniform island of Korčula provides a good example of the balance that occurs in microevolution between selective pressures toward homogenization and selective inertia toward heterogeneity. thirty-eight measurements were made from a sample of 471 males and 526 females. Head variables, being more eco-stable than body variables, remain relatively more different between two distinct populations (eastern and western villages) than do the more eco-labile body variables, although both do vary significantly between east and west. The differences apply to both men and women. These east-west contrasts reflect the differential migration of Slavs to the island over the past three centuries, with a new wave of immigrants settling mainly in the east and introducing a new gene pool to the pre-existing Slavic hybrid population which had settled the island in the sixth to the eighth centuries. In addition to the predominant east-west differences in morphology, we also find significant variation between all villages in both head and body variables. We conclude that this is an indication of the considerable reproductive isolation that has persisted between all villages until the post-World War II period. This paper is a part of a study conducted with financial suport from the joint Yugoslav-United States Board for Bilateral Research, as a common Institute for Medical Research and Occupational Health (Zagreb) and Smithsonian Institution (Washington, DC) research, projects JFP-429 and JFP-674.     

The effects of prolonged “bleaching” on the tissue biomass and reproduction of the reef coral Montastrea annularis

Colonies of Montastrea annularis from Carysfort Reef, Florida, that remained bleached seven months after the 1987 Caribbean bleaching event were studied to determine the long term effects of bleaching on coral physiology. Two types of bleached colonies were found: colonies with low numbers of zooxanthellae with normal pigment content, and a colony with high densities of lowpigment zooxanthellae. In both types, the zooxanthellae had an abnormal distribution within polyp tissues: highest densities were observed in basal endoderm and in mesenteries where zooxanthellae are not normally found. Bleached corals had 30% less tissue carbon and 44% less tissue nitrogen biomass per skeletal surface area, but the same tissue C:N ratio as other colonies that either did not bleach (normal) or that bleached and regained their zooxanthellae (recovered). Bleached corals were not able to complete gametogenesis during the reproductive season following the bleaching, while recovered corals were able to follow a normal gametogenic cycle. It appears that bleached corals were able to survive the prolonged period without nutritional contribution from their zooxanthellae by consuming their own structural materials for maintenance, but then, did not have the resources necessary for reproduction. The recovered corals, on the other hand, must have regained their zooxanthellae soon after the bleaching event since neither their tissue biomass nor their ability to reproduce were impaired.     

Chitinozoan zonation of the Late Ordovician and the Early Silurian of the island of Anticosti, Québec, Canada

A reappraisal of chitinozoan distribution across the Ordovician-Silurian boundary on the Island of Anticosti has led to the recognition of a new zone, the Ancyrochitina ellisbayensis biozone, in the uppermost part of the Ellis Bay Formation. This biozone lies between the well defined Upper Ordovician Spinachitina taugourdeaui biozone and the lowest Silurian (Rhuddanian) Plectochitina nodifera biozone of the Becscie Formation. The occurrence of such diagnostic species as P. nodifera, Belonechitina postrobusta, Conochitina electa and Ancyrochitina ramosaspina in the Lower Silurian of Anticosti points to a close similarity to faunas in Estonia and north Latvia and indicates an age ranging from the Parakidograptus acuminatus to the Coronograptus cyphus in terms of graptolite zones. The chitinozoan biozonation harmonizes with that based on conodonts and, to a lesser extent, with the known graptolite faunal succession. Five new species: Ancyrochitina ellisbayensis sp. nov., Clathrochitina postconcinna sp. nov., Conochitina gunriveris sp. nov., Clathrochitina perexilis sp. nov., Bursachitina basiconcava sp. nov. and three species in open nomenclature are described.     

The plasticity of the β-trefoil fold constitutes an evolutionary platform for protease inhibition

Proteases carry out a number of crucial functions inside and outside the cell. To protect the cells against the potentially lethal activities of these enzymes, specific inhibitors are produced to tightly regulate the protease activity. Independent reports suggest that the Kunitz-soybean trypsin inhibitor (STI) family has the potential to inhibit proteases with different specificities. In this study, we use a combination of biophysical methods to define the structural basis of the interaction of papaya protease inhibitor (PPI) with serine proteases. We show that PPI is a multiple-headed inhibitor; a single PPI molecule can bind two trypsin units at the same time. Based on sequence and structural analysis, we hypothesize that the inherent plasticity of the β-trefoil fold is paramount in the functional evolution of this family toward multiple protease inhibition.     

Is the island biogeography model a poor predictor of biodiversity patterns in shallow lakes?

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Rivets or bolts? When single species count in the function of temperate rocky reef communities

There is considerable controversy about the role of individual species in ecosystem functioning. Most models stress the role of species richness and diversity in ecosystem function, but it is also recognised that individual species or functionally similar species can play prominent roles in assessments of function. There have been relatively few tests of functional replacement by similar species in the marine environment. On intertidal reef platforms in southern New Zealand, six species of fucoid algae co-occur. Two of these, Cystophora torulosa and Hormosira banksii, have extensive cover in the mid-tidal zone. These species were removed from their areas of dominance in the mid-tidal zone at two sites and followed for several years to determine how resilient they are to disturbance, what processes determine functional recovery, the role of the dominant grazer, the gastropod Turbo smaragdus, in the recovery process, and whether there is functional replacement of species. In the C. torulosa removal experiment, H. banksii recruited rapidly into removal treatments within the first year at one site, but this took a year longer at the other site. A press removal of C. torulosa developed almost 100% cover of H. banksii after 3 years, but only at one site. In the pulse treatment, there was a mixed stand of the two species after 3-4 years. In the H. banksii removal experiment, there was no functional replacement by other species. The rate of recovery for H. banksii was variable. Bare space increased following canopy removal, particularly on the higher shore treatment at one site, because of the burn-off of newly exposed turfing coralline algae, which had not fully recovered by the end of the experiment. After 10 months, there were 20-40% fewer species in the removal plots in both experiments than in controls. T. smaragdus grazing had great effects on ephemeral algae, but not on the fucoids. The conclusion is that these fucoid species have no functional equivalents in their areas of dominance. They are the autogenic engineers or foundation species on which most other species in their communities rely. There is little buffering overall in these mid-shore zones should these species be lost or severely reduced in abundance. They are, therefore, key species in the function of the intertidal system and must be understood if the functioning of these areas is to be managed effectively. These results are discussed in the spirit of this festschrift for AJ Underwood.