Population structure, habitat features and genetic structure of managed red deer populations

Management of game ungulates alters population structure and habitat features, with potential effects on genetic structure. Here, we study 26 red deer (Cervus elaphus) populations in Spain. We used census data and habitat features as well as genetic information at 11 microsatellite markers from 717 individuals. We found that metapopulations presented a distribution associated with forest interruptions. Within metapopulations, fences did not have a significant effect on red deer genetic structure. The metapopulations we studied presented similar population structure, but they differed in habitat features and genetic structure. The metapopulation with higher resource availability showed a genetic structure pattern in which genetic relatedness between geographically close individuals was high while relatedness between geographically distant individuals was low. Contrarily, the metapopulation with lower resource availability presented a genetic structure pattern in which the genetic relatedness between individuals of different populations was independent of the geographic distance. We discuss the possible connection between resource availability and genetic structure. Finally, we did not find any population or environmental variable related to genetic differentiation within metapopulations.     

黑龙江省完达山地区马鹿生境破碎化及其影响因子

应用景观生态学原理和地理信息系统技术,分析黑龙江省完达山地区马鹿生境相关因子重要性、对景观连接度进行模糊相对赋值,建立了景观连接度评价模型及景观斑块指数,研究了黑龙江省完达山地区关于马鹿生境的景观连接度水平、生境的适宜性以及景观的空间结构。结果表明:(1)在155.6km2的面积中,适宜地区的总面积仅为14.81km2,占研究地区的9.52%;次适宜地区的总面积为9.57km2,占研究地区的6.15%;一般适宜地区的总面积为130.05km2,占研究地区的83.58%;不适宜地区的总面积为1.17km2,占研究地区的0.75%;(2)研究地区马鹿各类适宜地区呈多个斑块且相互隔离,在空间分布上处于破碎状态,而且不适宜地区斑块(人为活动景观)的面积比例虽小,在生态系统中形态上的破碎化程度较小,但对马鹿的生境的生态功能的丧失起到重要作用。     

生境破碎化过程对流域生境质量的影响

近几十年来,随着工业化、城市化的加速推进,人类活动对自然生境的干扰越来越频繁,导致生境破碎化与生境质量下降。在流域尺度上科学模拟生境破碎化过程及其对生境质量的影响,对于提升生物多样性和生态系统功能具有重要意义。以鄱阳湖流域为研究区域,基于InVEST模型分析区域生境质量的演变特征;从生境面积、生境边缘和生境隔离三个特征维度模拟生境破碎化过程;采用广义加性模型和地理探测器探究不同生境破碎化过程对生境质量变化的影响与交互作用。研究结果表明:(1)鄱阳湖流域生境质量呈下降趋势,从2000年的0.7862下降到2010年的0.7807,再下降到2020年的0.7715,但总体生境质量较好。生境质量较优的区域主要分布在流域南部、东北部以及西部地区,生境质量较差的区域主要分布在各个子流域的交界处。(2)2000-2010年,鄱阳湖流域生境面积占比下降、生境边缘增加和生境隔离增加三个生境破碎化过程分别占总研究区网格数的34.70%、30.15%和4.50%;2010-2020年分别占总研究区网格数的34.80%、30.69%和4.40%;2000-2020年分别占总研究区网格数的40.82%、37.50%和5.46%。生境面积减少的网格主要集中在鄱阳湖流域的中北部地区;生境边缘增加的网格分布和生境面积减少的网格分布相似;相比之下,生境隔离增加的网格较少,主要分布在各城市的中心城区范围。(3)生境破碎化过程对生境质量具有显著影响,两者呈非线性负相关关系;三个生境破碎化过程两两之间交互作用对生境质量的影响呈现双因子增强趋势。研究结果可为鄱阳湖流域生态格局优化与生境质量提升提供科学参考。     

The impacts of landscape structure on the winter movements and habitat selection of female red deer

An area of research that has recently gained more attention is to understand how species respond to environmental change such as the landscape structure and fragmentation. Movement is crucial to select habitats but the landscape structure influences the movement patterns of animals. Characterising the movement characteristics, utilisation distribution (UD) and habitat selection of a single species in different landscapes can provide important insights into species response to changes in the landscape. We investigate these three fields in female red deer (Cervus elaphus) in southern Sweden, in order to understand how landscape structure influences their movement and feeding patterns. Movements are compared between two regions, one dominated by a fragmented agriculture–forest mosaic and the other by managed homogenous forest. Red deer in the agriculture-dominated landscape had larger UDs compared to those in the forest-dominated area, moved larger distances between feeding and resting and left cover later in the day but used a similar duration for their movements, suggesting faster travelling speeds between resting and feeding locations. The habitat selection patterns of red deer indicate a trade-off between forage and cover, selecting for habitats that provide shelter during the day and forage by night. However, the level of trade-off, mediated through movement and space use patterns, is influenced by the landscape structure. Our approach provides further understanding of the link between individual animal space use and changing landscapes and can be applied to many species able to carry tracking devices.     

The distinct effects of habitat fragmentation on population size

We sought to understand how the separation of habitats into spatially isolated fragments influences the abundance of organisms. Using a simple, deterministic model of population growth, we compared analytically exact solutions predicting abundance of consumers in two isolated patches with abundance of consumers in a single large patch where the carrying capacity of the large patch is the sum of the carrying capacities of the isolated ones. For the deterministic model, the effect of fragmentation was to slow the rate of population growth in the fragmented habitat relative to the intact one. We also analyzed a stochastic version of the model to examine the effect of fragmentation on population abundance when resources vary randomly in time. For the stochastic model, the effect of fragmentation was to reduce population abundance. We proved in closed-form, that for a non-equilibrium population exhibiting logistic population growth, fragmentation will reduce population size even when the total carrying capacity is not affected by fragmentation. We provide a theoretical basis for the prediction that habitat fragmentation amplifies the effect of habitat loss on the abundance of mobile organisms.     

生境片断化对濒危植物景东翅子树种群结构与动态的影响

生境的破坏及其片断化是生物多样性丧失的主要原因, 了解生境片断化对植物种群动态的影响十分必要。本文比较分析了不同大小生境片断(5 ha和15 ha)和连续森林中濒危植物景东翅子树(Pterospermum kingtungense)种群的结构与动态, 目的是明确影响景东翅子树种群动态的关键生活史阶段及其种群保护的目标, 为濒危植物种群保护和管理策略的制定提供科学依据。在上述3种生境中分别设立3个50 m × 100 m的1.5 ha固定样地, 调查景东翅子树所有个体的胸径(其中幼苗和幼树为地径)和高度、个体的存活及幼苗的补充情况。基于上述统计参数, 建立预测种群动态的Lefkovitch矩阵模型, 同时应用矩阵模型的弹性分析方法量化种群统计参数对种群增长率的相对贡献。结果表明: (1)在5 ha和15 ha生境片断及连续森林各1.5 ha的样地中, 2018年首次调查到景东翅子树的个体数分别为34、82和88株, 2019年复查时的个体数分别为33、82和87株。3种生境中景东翅子树种群的年龄结构均以幼树为主, 但5 ha生境片断森林缺乏幼苗和大树(包括成树和亚成树), 而15 ha生境片断森林幼苗较丰富。(2)在3种生境中景东翅子树种群的增长率等于1 (15 ha生境片断)或趋近于1 (5 ha生境片断和连续森林), 说明不同生境中的景东翅子树种群比较稳定, 这主要是因为其各生活史阶段的存活率均较高。(3)景东翅子树成树和亚成树阶段的存活率对种群增长率的贡献最大, 是影响其种群动态的关键生活史阶段。因此对于大树(包括成树和亚成树)的保护是极度濒危植物景东翅子树种群维持的关键。研究结果揭示小生境片断降低了景东翅子树种群的数量, 改变了种群的结构, 但对种群动态的影响效应尚未显现。因此对于这些小生境片断中濒危植物种群的保护和恢复是可行的, 也是有价值的。     

The relationship between tooth wear, habitat quality and late-life reproduction in a wild red deer population

1. Molar tooth wear is considered an important proximate mechanism driving patterns of senescence in ungulates but few studies have investigated the causes of variation in molar wear or their consequences for reproductive success. 2. In this study, we assessed molar tooth wear at death among red deer Cervus elaphus of known age on the Isle of Rum, Scotland. 3. First molar height showed a decelerating decline with age. In females, the rates of molar wear with age varied with location of home range and individuals experiencing low resource competition showed reduced molar wear. We suggest that this spatial variation in molar wear is related to differences in the availability of high-quality grazing habitat and levels of resource competition. 4. There was no evidence that females with more heavily worn molars had reduced reproductive performance late in life or that first molar height was associated with reproductive senescence.     

The effect of habitat fragmentation on finescale population structure of wood frogs (Rana sylvatica)

We examined the impact of recent anthropogenic habitat fragmentation on the genetic structure of wood frog (Rana sylvatica) breeding sites in Wellington County of Ontario, Canada. In addition to geographic distance (average pairwise distance ~22 km, greatest distance ~50.22 km), four landscape features hypothesized to contribute to genetic differentiation between breeding sites were considered: road density, a major highway (highway 401), canopy cover, and watershed discontinuity. Analysis of data from 396 samples across nine breeding sites using eight microsatellite DNA loci, revealed a small degree of significant genetic structure between breeding sites. The presence of highway 401 and road density were correlated with small but statistically significant structure observed between several groups of sites. One outlier breeding site outside of Wellington County located within the city of Toronto, had significantly lower allelic richness and much larger population differentiation with the Wellington sites. Our data suggest that recent fragmentation has had an effect on wood frog population structure and also demonstrate the importance of dispersal for this species in maintaining levels of genetic diversity.     

Impact of habitat fragmentation on genetic population structure of roach, Rutilus rutilus, in a riparian ecosystem

During the last 200 years, the riparianecosystem along major rivers has been reducedto a few scattered remnants. Important elementsof the riparian ecosystem are water bodieswhich were originally connected to the mainriver channel by annual floodings. Due to riverregulations many of these remnants are nowvirtually isolated. In an allozyme analysisusing roach, Rutilus rutilus, as a studyspecies we demonstrate that the geneticdiversity (number of alleles per locus,expected heterozygosity) of populations livingwithin floodplain water bodies is not severelyimpoverished compared to the genetic diversitywithin the main river channel. However, wefound slight differences in the allelefrequencies of flood plain water bodies and themain river channel. Nevertheless, fishpopulations in floodplain water bodies mayserve as reservoirs of autochthonous geneticmaterial for restoration of fish populations inthe main river channel after populationextinction due to catastrophic accidents (e.g.industrial pollution).     

The population genetic consequences of habitat fragmentation for plants

Habitat fragmentation reduces the size and increases the spatial isolation of plant populations. Initial predictions have been that such changes will be accompanied by an erosion of genetic variation and increased interpopulation genetic divergence due to increased random genetic drift, elevated inbreeding and reduced gene flow. Results of recent empirical studies suggest that while genetic variation may decrease with reduced remnant population size, not all fragmentation events lead to genetic losses and different types of genetic variation (e.g. allozyme and quantitative variation) may respond differently. In some circumstances, fragmentation actually appears to increase gene flow among remnant populations, breaking down local genetic structure.     

Disentangling demographic effects of red deer on chamois population dynamics

Investigating the impact of ecological factors on sex‐ and age‐specific vital rates is essential to understand animal population dynamics and detect the potential for interactions between sympatric species. We used block count data and autoregressive linear models to investigate variation in birth rate, kid survival, female survival, and male survival in a population of Alpine chamois Rupicapra rupicapra rupicapra monitored over 27 years within the Stelvio National Park, Central Italian Alps, as function of climatic variables, density dependence, and interspecific competition with red deer Cervus elaphus. We also used path analysis to assess the indirect effect of deer abundance on chamois growth rate mediated by each demographic parameter. Based on previous findings, we predicted that birth rate at [t] would negatively relate to red deer abundance at year [t − 1]; survival rates between [t] and [t + 1] would negatively relate to red deer abundance at year [t − 1] and to the interactive effect of winter precipitation at [t + 1] and chamois density at [t]. Our results showed that birth rate was positively related to spring–summer precipitation in the previous year, but this effect was hampered by increasing red deer abundance. Kid and female survival rates were negatively related to the combined effect of chamois abundance and winter precipitation. Male and female survival rates were negatively related to lagged red deer abundance. The path analysis supported a negative indirect effect of red deer abundance on chamois growth rate mediated by birth rate and female survival. Our results suggest that chamois population dynamics was largely explained by the synergistic effect of density dependence and winter harshness, as well as by interspecific competition with red deer, whose effects were seemingly stronger on the kid–female segment of the population.     

The effect of agricultural land use practice on habitat selection of red deer

The population of red deer (Cervus elaphus) has increased substantially in many western European countries during recent decades. Simultaneously, agricultural practices have undergone major changes. Observations suggest that meadows and pastures are important sources of nutrients for deer, but there are few studies quantifying the selection of agricultural land by deer in general. Here, we study red deer selection of various types of agricultural land and the history of land use (times of fertilisation and since renewal) in Norway. We used data from 14 female and 12 male red deer with GPS collars during the years 2007–2010. Our study design was to compare pairs of agricultural fields that had received “low” and “high” use by a given individual red deer and data were analysed by using case–control logistic regression. Our results showed that both sexes selected meadows over other types of agricultural land. Females selected intensively fertilised meadows and meadows of intermediate age, while male selection did not depend on meadow age (time since renewal) or fertilisation. The smaller females thus selected meadows of high quality, while the larger males continued to use old meadows of lower quality but rich in biomass. Our analysis suggests that a decreasing supply of meadows in the future due to lower production of livestock fodder may also affect management of red deer, and that a future change in the intensity of agricultural practices may affect sexes of wild large herbivores differently.     

High genetic diversity and low population structure in red foxes (Vulpes vulpes) from Croatia

The red fox (Vulpes vulpes) is a highly adaptable omnivorous mammal distributed across all continents on the northern hemisphere. Although the red fox is present throughout Europe, where it plays an important ecological and socio-economic role not only as a game species but also as a rabies reservoir, few studies have examined its population-level mitochondrial DNA variability. In this study, 27 mitochondrial DNA control region haplotypes were identified in 229 red fox samples taken from four regions in Croatia. Haplotype diversity of Croatian red foxes (0.901) was found to be among the highest of all European red fox populations studied to date. Genetic differentiation among regions was quite low, and statistically significant estimates of differentiation were obtained only when comparing the population from the peninsular region of Istria with the three continental populations. It seems that landscape barriers like rivers and small mountains do not restrict gene flow among foxes in the continental part of Croatia, while the combination of a narrow land bridge and altitudes exceeding 1000 m limit fox migration between Istria and the rest of the continent. Better understanding of small-scale population structure will require analysis of highly variable nuclear markers like microsatellites.     

生境破碎化对食果动物及种子传播的影响

食果动物与依赖其传播种子的植物间在进化过程中形成互惠关系,生境破碎化往往干扰种子传播过程,继而破坏这种关系.生境破碎化通常降低食果动物的多样性,但亦有相反的情况出现.食果动物对生境破碎化的适应能力不同,泛性森林动物和广食性动物具有较强的适应性.生境破碎化对依赖动物传播的植物影响有差异,多数植物受到负面影响,但也有一些植物不受影响,甚至受益.动物在破碎生境中对种子传播的有效性是种子搬运量、传播距离、种子萌发及种群建立等环节的综合效果.破碎化生境中种子的搬运量与动物的觅食行为和食物选择有关;种子传播距离受食物资源可获得性的改变和生境斑块异质性的影响;种子萌发和更新种群建立成功与否决定于是否存在有效的种子传播者.生境破碎化如何影响种子传播以及动植物相互关系,尤其是异质斑块的空间分布如何影响食果动物的传播有效性、破碎化生境下动植物互惠共生关系如何建立,生境破碎化导致的植物入侵对本地植物种子传播的影响是未来需要深入研究的问题.     

Non-indigenous introgression into the Norwegian red deer population

Rates of introgression from non-indigenous into native populations are increasing worldwide, often as a result of anthropogenic translocation events. In ungulates translocations have been common, especially among deer. European red deer consists of two distinct lineages, one western and one eastern. These probably originate from different glacial refuges, but it is unknown to what extent they hold different adaptations. Here we address dispersal and introgression into the Norwegian mainland population from an introduced island stock consisting of an admixture of both European lineages. The last decade this stock has grown considerably in number and dispersal could be expected to have increased. We therefore used samples separated by a 5 year interval from Otterøya, adjacent mainland areas and a more distant sub-population. Bayesian assignment analysis verified the genetic structure and identified dispersal between the Otterøya stock and the adjacent mainland coastal areas. Three individuals (two newly sampled) with second or third generation non-indigenous origin were found among the adjacent mainland samples (5 and 3 %, respectively). Two individuals with first and second generation mainland-origin were found on Otterøya (old samples). This suggests some non-indigenous introgression from Otterøya into the mainland Norwegian population.     

The tragedy of the commons: unsustainable population structure of Iberian red deer in hunting estates

Hunting can influence population structure with consequences in ecological and evolutionary processes. Populations of Iberian red deer (Cervus elaphus hispanicus) in Spain occur under two different management regimes: fenced and unfenced (open) estates. We compared census data, hunting bags and data from hunted individuals between both types of estates. Harvest on stags was moderate in fenced estates but strong in open ones, probably due to the competition between neighbouring landowners over the same deer populations. On the contrary, female culling was low in open estates compared to fenced ones. As a result, populations in open estates have mostly young males and strongly female-biased sex ratios. Female-biased population structure in open estates did not result in higher number of males being harvested per year compared with fenced estates, probably due to negative effects on development, survival and reproduction, and harvested males were younger, and hence, with smaller antlers. There is published evidence for undesirable effects of biased population sex ratio and age structure in these red deer populations. Our results indicate that this type of management may be unsustainable and recommend that harvest on males in open estates should be reduced and that on females increased, in order to maintain a more balanced population structure that may allow sustainable population dynamics and the operation of natural evolutionary processes.     

内蒙古赛罕乌拉自然保护区东北马鹿种群遗传多样性与性别结构分析

东北马鹿(Cervuscanadensis)种群面临着地理隔绝和生境破碎化等问题,对其种群遗传多样性和性别结构的研究,有助于了解其隔离种群的生存现状,为保护与管理工作提供科学依据.本研究利用8对微卫星分子标记,对内蒙古赛罕乌拉国家级自然保护区的456份马鹿粪便样品进行遗传多样性分析.结果识别出2015年冬季56只个体,...     

Influence of habitat features and hunter behavior on white-tailed deer harvest

Sport hunting may help in controlling cervid populations over large areas. As with natural predators, several environmental factors can influence sport harvest. A better understanding of the environmental variables that limit the efficiency of sport hunting could provide guidelines for more efficient wildlife management using hunting. We studied white-tailed deer (Odocoileus virginianus) hunting on a high deer density island where hunting was the sole form of predation. Our objective was to study the behavior of sport hunters and determine the habitat characteristics (e.g., abundance of deer forage, visibility of the deer from the hunter's point of view, and accessibility of the territory to hunters) that are associated with a successful harvest. We collected movements and harvest site location data from 477 hunters equipped with handheld Global Positioning System (GPS) units. Harvest sites were visited and characterized, along with a paired random site, to determine the environmental conditions associated with a successful hunt. We also developed a model to predict the daily number of deer seen by hunters considering weather conditions, hunter characteristics (e.g., age, experience), and date of hunting. We used the mean number of deer seen per hunter per day as a relative index of local density in each hunted territory. At both the site and landscape scales, the combination of visibility and access had a positive effect on the distribution of harvested deer. Habitat types with less visual obstruction from vegetation enabled hunters to see more deer in a given day. At the site scale, harvested deer were located in areas with a lower density of access routes compared to areas where hunters travelled throughout the day. Using an innovative approach of studying hunter behavior with GPS technology, digital maps, and questionnaires, we highlighted the factors associated with hunter success. Our study suggests that habitat characteristics could be modified to increase harvest by improving accessibility and visibility near roads. Creating openings in mature and regenerating forest near access roads could make sport hunting a more efficient management tool, but the potential impact of increased forage availability in forest openings should not be overlooked. © 2012 The Wildlife Society.