Species Diversity and Seasonal Distribution of Culicoides spp. (Diptera: Ceratopogonidae) in Jeju-do,Republic of Korea

Biting midges belonging to the genus Culicoides (Diptera: Ceratopogonidae) were collected by Mosquito Magnet^® and black light traps at 5 sites on Jeju-do, Republic of Korea (Korea), from May-November 2013 to determine species diversity and seasonal distribution. A total of 4,267 specimens were collected, of which 99.9% were female. The most common species was Culicoides tainanus (91.8%), followed by C. lungchiensis (7.2%) and C. punctatus (0.6%), while the remaining 4 species accounted for <0.5% of all Culicoides spp. that were collected. High numbers of C. tainanus were collected in May, followed by decreasing numbers through August, and then increasing numbers through November when surveillance was terminated. Peak numbers of C. lungchiensis were collected during September, with low numbers collected from May-August and October-November. The presence of C. lungchiensis in Korea was confirmed by morphological and molecular analyses.     

Phylogenomic analysis of pseudocryptic diversity reveals the new genus Deltalsia (Rhodomelaceae,Rhodophyta)

Molecular analyses, in combination with morphological studies, provide invaluable tools for delineating red algal taxa. However, molecular datasets are incomplete and taxonomic revisions are often required once additional species or populations are sequenced. The small red alga Conferva parasitica was described from the British Isles in 1762 and then reported from other parts of Europe. Conferva parasitica was traditionally included in the genus Pterosiphonia (type species P. cloiophylla in Schmitz and Falkenberg 1897), based on its morphological characters, and later transferred to Symphyocladia and finally to Symphyocladiella using molecular data from an Iberian specimen. However, although morphological differences have been observed between specimens of Symphyocladiella parasitica from northern and southern Europe they have yet to be investigated in a phylogenetic context. In this study, we collected specimens from both regions, studied their morphology and analyzed rbcL and cox1 DNA sequences. We determined the phylogenetic position of a British specimen using a phylogenomic approach based on mitochondrial and plastid genomes. Northern and southern European populations attributed to S. parasitica represent different species. Symphyocladiella arecina sp. nov. is proposed for specimens from southern Europe, but British specimens were resolved as a distant sister lineage to the morphologically distinctive Amplisiphonia, so we propose the new genus Deltalsia for this species. Our study highlights the relevance of using materials collected close to the type localities for taxonomic reassessments, and showcases the utility of genome-based phylogenies for resolving classification issues in the red algae.     

An ITS-based phylogenetic framework for the genus Vorticella: finding the molecular and morphological gaps in a taxonomically difficult group

Vorticella includes more than 100 currently recognized species and represents one of the most taxonomically challenging genera of ciliates. Molecular phylogenetic analysis of Vorticella has been performed so far with only sequences coding for small subunit ribosomal RNA (SSU rRNA); only a few of its species have been investigated using other genetic markers owing to a lack of similar sequences for comparison. Consequently, phylogenetic relationships within the genus remain unclear, and molecular discrimination between morphospecies is often difficult because most regions of the SSU rRNA gene are too highly conserved to be helpful. In this paper, we move molecular systematics for this group of ciliates to the infrageneric level by sequencing additional molecular markers—fast-evolving internal transcribed spacer (ITS) regions—in a broad sample of 66 individual samples of 28 morphospecies of Vorticella collected from Asia, North America and Europe. Our phylogenies all featured two strongly supported, highly divergent, paraphyletic clades (I, II) comprising the morphologically defined genus Vorticella. Three major lineages made up clade I, with a relatively well-resolved branching order in each one. The marked divergence of clade II from clade I confirms that the former should be recognized as a separate taxonomic unit as indicated by SSU rRNA phylogenies. We made the first attempt to elucidate relationships between species in clade II using both morphological and multi-gene approaches, and our data supported a close relationship between some morphospecies of Vorticella and Opisthonecta, indicating that relationships between species in the clade are far more complex than would be expected from their morphology. Different patterns of helix III of ITS2 secondary structure were clearly specific to clades and subclades of Vorticella and, therefore, may prove useful for resolving phylogenetic relationships in other groups of ciliates.     

Small and overlooked: Phylogeny of the genus Trigonodactylus (Squamata: Gekkonidae), with the first record of Trigonodactylus arabicus from Jordan

Geckos of the genus Trigonodactylus are widely distributed in the sand deserts of the Arabian Peninsula. Three species of this genus are currently recognized, with a fourth one, Stenodactylus pulcher, which placement within Trigonodactylus has been tentatively suggested, but not yet confirmed. We present a phylogenetic analysis of the genus Trigonodactylus with new specimens collected in central Saudi Arabia and southern Jordan. New genetic data has been generated from three mitochondrial markers to investigate the phylogenetic relationships of all species of the genus and to assess the putative generic assignment of S. pulcher. Our results confirm that S. pulcher indeed belongs within Trigonodactylus, branching as a sister lineage to all other species of the genus. The new samples cluster within Trigonodactylus arabicus, thus confirming the genetic homogeneity of the species across its large and seemingly inhospitable range. The new specimen collected in southern Jordan represents the first record for the country and a considerable range extension to the northwest from all previously reported localities. Our findings and discovery of a new species for Jordan highlight the need of more field surveys to be carried out in the underexplored parts of Jordan and northern Saudi Arabia, as these places still hold a potential for new discoveries and are crucial for understating the biogeography of the Arabian herpetofauna.     

Taxonomic revision of the East Asian genus Scleropteroides Colonnelli, 1979 (Coleoptera,Curculionidae, Ceutorhynchinae)

The genus Scleropteroides Colonnelli, 1979 (Ceutorhynchinae: Scleropterini) was revised on the basis of detailed morphological observations. The genus was redefined to include three species from East Asia: S. hypocrita (Hustache, 1916) is redescribed and recorded from northeastern China and northern Korea for the first time; S. horridulus (Voss, 1958) is redescribed with new records from southern Korea; S. insularis Voss, 1971 was moved from synonymy with S. hypocrita to that with S. horridulus (syn. n.), and S. longiprocessus Huang & Yoshitake, sp. n. is described as new, sympatric with S. hypocrita in Japan. All the species are associated with woody Rubus species (Rosaceae). A key to species, habitus photographs, illustrations of important characters, and distribution maps are provided for each species.     

Redescription of Mayerella magellanica McCain & Gray, 1971 (Crustacea: Amphipoda: Caprellidea) from Chile with a revision of the genus Mayerella

Mayerella magellanica McCain & Gray, 1971 is redescribed and figured based on specimens collected from Huasco, Northern Chile, which represents the northernmost record of this species. Mayerella magellanica can be distinguished from all other species of the genus by the long basis of gnathopod 2. Figures of all species of Mayerella and a key to identification are given.     

Simognathus coreensis, a new halacarid mite (Halacaridae: Acari) from Korea

Simognathus coreensis n. sp. is described on the basis of the specimens collected from Youngdeok, the east coast of South Korea. This is the first record of this genus from Korea. Diagnostic features are as follows: big cornea present on ocular plate, covering major portion of it; lateral claws II–IV with accessory process which contain about 5 minute (meaning `very small') teeth, and lateral claws smooth ventrally; prominent foveae on all telofemora; anterodorsal and posterodorsal plate subequal; lateral side of anterior epimeral plate foveate. This species is similar to S. corneatus Otto and S. exoticus Otto. Dissimilarities are discussed. Abbreviations: AD, anterodorsal plate; AE, anterior epimeral plate; ds, dorsal setae of idiosoma I; GA, genitoanal plate; GO, genital opening; PE, posterior epimeral plate; EP I, epimeral process I; PGS, perigenital setae; P1-P3, first to third palpal segment; SGS, subgenital seta.     

Phylogeny, diversity, and species delimitation of the North American Round-Nosed Minnows (Teleostei: Dionda), as inferred from mitochondrial and nuclear DNA sequences

Accurate delimitation of species is a critical first step in protecting biodiversity. Detection of distinct species is especially important for groups of organisms that inhabit sensitive environments subject to recent degradation, such as creeks, springs, and rivers in arid or semi-desert regions. The genus Dionda currently includes six recognized and described species of minnows that live in clear springs and spring-fed creeks of Texas, New Mexico (USA), and northern Mexico, but the boundaries, delimitation, and characterization of species in this genus have not been examined rigorously. The habitats of some of the species in this genus are rapidly deteriorating, and many local populations of Dionda have been extirpated. Considering the increasing concerns over degradation of their habitat, and pending a more detailed morphological revision of the genus, we undertook a molecular survey based on four DNA regions to examine variation over the range of the genus, test species boundaries, and infer phylogenetic relationships within Dionda. Based on analyses of two mitochondrial (cytb and D-loop) and two nuclear (Rag1 and S7) DNA regions from specimens collected throughout the range of Dionda, we identified 12 distinct species in the genus. Formerly synonymized names are available for two of these species, and four other species remain undescribed. We also redefine the known range of six species. The limited distribution of several of the species, coupled with widespread habitat degradation, suggests that many of the species in this genus should be targets for conservation and recovery efforts.     

A new species of Socarnes Boeck, 1871 (Crustacea,Amphipoda, Lysianassidae) from Korean waters

A new species of lysianassid amphipod belonging to the genus Socarnes Boeck was collected from Korean coastal waters. This is the first record of the genus Socarnes from Korea. The new species is fully illustrated and extensively compared with related species. A key to Socarnes speciesis provided.     

Sistotrema subconfluens sp. nov. (Cantharellales,Basidiomycota) from Changbaishan Nature Reserve,northeastern China

Sistotrema, typified by S. confluens, is characterized mainly by its urniform basidia mostly with 6–8 sterigmata as well as by a monomitic hyphal system, oil rich hyphae and smooth basidiospores. The species of this genus have various hymenophore configurations and basidiospore shapes. During a field trip in 2011, two specimens with urniform basidia were collected from Changbaishan Nature Reserve, northeastern China. After careful morphological and molecular studies, they are described and illustrated here as a new species, S. subconfluens. The new species shares a terrestrial habit, stipitate basidiocarps and poroid hymenophores with S. confluens, besides urniform basidia. These characters make the two species different from all other species of Sistotrema with resupinate basidiocarps on wood. Sistotrema subconfluens differs from the type by having larger basidiocarps, shorter basidiospores and consistent poroid hymenophores. In phylogeny inferred from nuclear large subunit rDNA, the two species were sister taxa but clearly separated. The difference of internal transcribed spacer sequences between the two species was 3.6%.     

A new species of the genus Probles Förster (Hymenoptera: Ichneumonidae: Tersilochinae) from South Korea

The new species Probles (Euporizon) leei Khalaim, Balueva & Kim sp. nov., is described from South Korea. The new species is characterized by a reduction of the groove between glymma and the ventral part of postpetiole, whereas other species of Probles typically have a well-developed groove. This is the most abundant species of Probles in South Korea, where it accounts for over half of all collected specimens of the genus.     

Phylogeography of Rhabdias spp. (Nematoda: Rhabdiasidae) collected from Bufo species in Honshu,Shikoku, and Kyushu,Japan including possible cryptic species

The genus Rhabdias Stiles & Hassall, 1905 comprises lung parasites of amphibians and reptiles worldwide. In Japan, 9 species have been recorded, including Rhabdias incerta Wilkie, 1930 which has been reported only in Bufo species. In this study, to assess the diversity of R. incerta, we performed molecular analyses of Rhabdias species sampled from three species/subspecies of Japanese toads namely Bufo japonicus, B. japonicus formosus, and B. torrenticola, collected in various regions of Honshu, Shikoku, and Kyushu, Japan. DNA sequence divergence was compared using mtDNA (COI) and nuclear DNA (28S) to identify possible cryptic species. Morphological analysis was performed through light microscopy and scanning electron microscopy (SEM). The results revealed that Bufo spp. serve as hosts for at least three Rhabdias species. Morphologically, most samples were identified as R. incerta but with a longer body and larger buccal cavity than originally described. Rhabdias incerta appears to be specific to the genus Bufo and is further subdivided into two or three phylogroups based on subspecies divisions and biogeography of their host. Some Rhabdias specimens collected in this study resemble R. tokyoensis Wilkie, 1930, parasitic in hosts from the order Caudata, which suggests host switching. Both molecular and morphological analyses suggested the presence of undescribed and cryptic Rhabdias species within toads collected in Japan. This study was the first to molecularly characterize Rhabdias species in Japan, including novel sequences of R. incerta and two undescribed species.     

Molecular analysis of larvae suggests the existence of a second species of Sulcascaris (Nematoda: Anisakidae: Anisakinae) in the Japanese moon scallop (Ylistrum japonicum) from Japanese waters

Herein, the morphological and genetic features of the larval specimens of anisakine nematode, isolated from Ylistrum japonicum (Pectinidae) collected from Japanese waters, were examined. Although the specimens were identified as members of the genus Sulcascaris, they were genetically divergent from Sulcascaris sulcata, which is currently the only member of the genus. The present study highlights the possibility that the Sulcascaris population inhabiting Japanese waters represents a unique taxonomic position within the genus Sulcascaris. Additionally, given that many pectinid scallops have been reported as intermediate host of S. sulcata, the present study implies that pectinid scallops may also represent the primary intermediate hosts for the present Japanese Sulcascaris species. Because S. sulcata infections can cause discoloration in the meat of scallops, regular monitoring of the prevalence and intensity of Sulcascaris infections is required to predict the impact of the infections on the market.     

Reassessment of species distribution and occurrence of mud crab (Scylla spp., Portunidae) in Malaysia through morphological and molecular identification

This study utilized genetic and morphometric approaches to assess the molecular and morphometric differentiation among commercially important species of mud crab. Molecular investigations were derived from 542 bp mitochondrial DNA COI on 249 individuals within genus Scylla from nine states in Malaysia represents four marine regions; South China Sea, Sulu Sea, Straits of Singapore and Straits of Malacca. Four specimens were obtained from Indonesia to give a robust analysis in this study. For species delimitation, Automatic Barcode Gap Discovery (ABGD) method on a web interface was employed. Analysis on phylogenetics was implemented utilizing Neighbour joining (NJ) and Maximum Parsimony (MP) methods. The inter- and intraspecies genetic distances (D_s) was computed using Kimura 2-parameter distance and executed in MEGA version 5.05. All samples were genetically and morphologically identified and clustered into four distinct species. Among the species, S. olivacea was the most abundant (n = 111), on the other hand the occurrence of S. paramamosain in Malaysia was very low (n = 29). No single individual of S. serrata from Malaysia was recorded in this study. Both genetic distance and phylogenetic approaches exhibited a correlative monophyletic association among all specimens analysed. This present study is crucial as it reports the reassessment of all species within genus Scylla in Malaysia, eventually could be employed as a reference source for subsequent research mainly on mariculture and other conservation efforts for the species.     

A first report of Sphenothallus Hall, 1847 in the Cambrian of Variscan Europe

Ten specimens of two phosphatic fossils have been recently discovered in lower and middle portions of Middle Cambrian Jince Formation in the Czech Republic. They are attributed to the genus Sphenothallus Hall, 1847 and described as two separate species; comparatively small conchs are described as S. kozaki sp. nov., the much larger specimens characterized by its smooth and partly flexible organo-phosphatic walls of shell are determined as ?S. kordulei sp. nov. Sphenothallus is known to range from Cambrian to Permian and accommodates numerous species. However, its Cambrian distribution is considerably restricted. Generally rare specimens have been described from Lower to Middle Cambrian of Laurentia and from the Lower Cambrian of Gondwana and peri-Gondwana. The new record of Sphenothallus from the Jince Biota represents a notable extension of their geographic range.