Sampling conditions for reliable routine detection by enzyme-linked immunosorbent assay of three ilarviruses in fruit trees

Enzyme-linked immunosorbent assay (ELISA) was used to test plum trees for prune dwarf (PDV), Prunus necrotic ringspot (NRSV) and apple mosaic (ApMV) viruses, cherry trees for PDV and NRSV, and apple trees for ApMV. Optimum conditions were determined for sampling in large-scale surveys for these viruses. All three viruses were detected throughout the growing season in individual samples of young leaves, or twigs with newly formed buds. However, when single infected leaves were combined with different numbers of healthy leaves, tests were most successful for all three viruses early in the growing season. PDV was detected in 1/40 (infected/total leaves) cherry leaves in April and May and 1/40 plum leaves until July, whereas NRSV was detected in 1/20 cherry leaves until July and 1/20 plum leaves until May. ApMV was detected in 1/20 apple or plum leaves until June but was detected less readily in mature leaves after June than either NRSV or PDV. There was no evidence of uneven distribution of virus infection in the trees. The viruses were detected in leaf samples kept for 8 wk at 3°C but freezing was less reliable for storage especially with ApMV. ApMV was detected in tests on plants held for several weeks at 25°C, and PDV and NRSV in plants held at 30°C.     

逆转录-聚合酶链式反应技术检测"歇马杏"主要病毒

目的：调查“歇马杏”携带主要病毒的情况。方法：利用作者已建立的ACLSV、PNRSV和PDVRT—PCR检测体系对4宁省大连市地方特产“歇马杏”田间植株携带三种病毒的情况进行了调查。结果：被检植株ACLSV、PNRSV和PDV的单独感染率分别为83．33％、83．33％和190％,复合感染率达到76．67％,但带毒程度不同。     

Development of multiplex RT-PCR assay for simultaneous detection of four viruses infecting apple (Malus domestica)

The major viruses infecting apple cultivars throughout the world including India are apple mosaic virus (ApMV), apple stem pitting virus (ASPV), apple stem grooving virus (ASGV), apple chlorotic leaf spot virus (ACLSV), and recently, a new virus, apple necrotic mosaic virus (ApNMV), was reported from mosaic-infected apple cultivars in India. The aim of this study was to detect the ApNMV virus along with the other three viruses (ApMV, ASPV and ASGV) simultaneously by multiplex RT-PCR. Four primer-pair-produced amplicons of 670, 550, 350 and 210 bp corresponding to ApNMV, ApMV, ASPV and ASGV, respectively, were found to be specific for these viruses when tested individually. The annealing temperature (55°C), primer concentration (0·8 µl) and other components of the master mix were standardized for the development of one-step m-RT-PCR assay. The m-RT-PCR protocol developed was further validated with 30 samples from seven symptomatic or asymptomatic apple cultivars, which revealed the presence of more than one virus in these cultivars. Most of the viruses were found to be present either alone or in mixed infection; however, ASPV was more common in tested cultivars. An easy, cost-effective and rapid multiplex RT-RCR protocol was developed to detect the four viruses, which infect apple plants either in individually or together in the field. This assay will help in the surveying and indexing of apple germplasm and the distribution of all four viruses in the apple growing regions of India.     

Versuche zur Ausarbeitung einer Laborprüfmethode zwecks Feststellung der Knollenresistenz gegenüber Phytophthora infestans

Beim routinemäßigen Nachweis mechanisch übertragbarer Viren in Bäumen des Kern‐ und Steinobstes kann die Probeentnahme das Testergebnis u. U. nachhaltig beeinflussen. Die Kenntnis der Verteilung dieser Erreger in der Baumkrone ist deshalb von entscheidender Bedeutung. Folgende Viren wurden in die Untersuchungen einbezogen: Chlorotisches Apfelblattfleckungs‐Virus (apple chlorotic leaf spot virus, CLSV), Apfelstammfurchungs‐Virus (apple stem grooving virus, SGV) und Apfelmosaik‐Virus (apple mosic virus, ApMV) (Kernobst) bzw. Nekrotisches und Chlorotisches Kirschenringflecken‐Virus (Prunus necrotic ringspot virus, PNRV; prune dwarf virus, PDV), ApMV, CLSV, Scharka‐Virus der Pflaume (plum pox virus, PPV), Petunia asteroid mosaic virus (PAMV) und Kirschenblattroll‐Virus (cherry leaf roll virus, CLRV) (Steinobst). In der Regel kam der ELISA, nur in Einzelfällen der Latextest, zur Anwendung. Die genannten Viren lassen sich hinsichtlich der Verteilung in der holzigen Wirtspflanze 3 Gruppen zuordnen:

• Viren mit systemischer Verteilung: CLSV, SGV, PNRV, PDV, PPV in hochanfälligen Pflaumensorten und Pfirsich

• Viren mit teilsystemischer Verteilung: ApMV, PPV in weniger anfälligen Pflaumensorten

• Viren mit sporadischer Verteilung: PAMV, CLRV

     

Molecular diagnosis of apple virus and viroid pathogens from India

Apple is known to be susceptible to various virus and viroid pathogens. Symptomatic apple cultivars and rootstocks were collected and analyzed by ELISA and then through RT-PCR. The study reports the presence of Apple mosaic virus (ApMV), Apple stem grooving virus (ASGV), Apple stem pitting virus (ASPV), Apple chlorotic leaf spot virus (ACLSV), the major apple viruses and Prunus necrotic ringspot virus (PNRSV), a minor apple virus, at the molecular level in India. Apple scar skin viroid (ASSVd) infection was also confirmed at the molecular level. Sporadic incidences of Tomato ringspot virus and Arabis mosaic virus infections were also detected by ELISA in nursery plants.     

Influence of in vitro factors on titre and elimination of model fruit tree viruses

The titre of apple chlorotic leaf spot virus (ACLSV) was higher in microplants of Malus domestica cv. Jonagold than in 2-year-old grafted scions. Cytokinin concentration in the medium increased the titre of prunus necrotic ringspot virus (PNRSV) in the apex of microplants of Prunus insititia cv. Kozlienka but did not affect the titre of ACLSV in M .domestica.Virus titre of ACLSVwas higher in the haulms of autotrophically-grown compared with heterotrophically-grown microplants whereas as for PNRSV the results were the reverse. For both viruses, however, titre of the virus in the roots of autotrophically-grown plants was significantly higher than in haulm tissue from heterotrophic cultures. Ribavirin incorporation resulted in elimination of both viruses. Negative ELISA results were confirmed independently by PCR. The efficacy of Ribavirin in elimination of ACLSV was increased by increasing the concentration of cytokinin in the medium in parallel with decreasing the concentration of Ribavirin. These results are discussed in the context of the reliability of in vitro virus testing.     

Occurrence and Diversity of Pome Fruit Viruses in Apple and Pear Orchards in Latvia

Apple chlorotic leaf spot virus (ACLSV), Apple stem pitting virus (ASPV), Apple stem grooving virus (ASGV) and Apple mosaic virus are economically important viruses infecting fruit tree species worldwide. To evaluate the occurrence of these pome fruit viruses in Latvia, a large‐scale survey was carried out in 2007. Collected samples were tested for infection by DAS ELISA and multiplex RT‐PCR. The accuracy of the detection of the viruses in multiplex RT‐PCR was confirmed by sequencing amplified PCR fragments. The results showed a wide occurrence of viruses in apple and pear commercial orchards established from non‐tested planting material. More than 89% of the tested apple trees and more than 60% of pear trees were infected with one or more pome fruit viruses. Analyses showed that the high occurrence of viruses in several apple cultivars is due to the propagation of infected clonal rootstocks and scions from infected mother trees. Sequence analyses targeting the 3′‐terminal region of the tested viruses showed various degrees of genetic diversity within respective virus isolates. This is the first report of the occurrence of ACLSV, ASGV and ASPV in apple and pear trees in Latvia and demonstrates their genetic diversity in different host genotypes.     

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare.     

Simultaneous Detection of Major Pome Fruit Viruses and a Viroid

A rapid and sensitive two-step RT-PCR protocol for simultaneous detection of major apple viruses, namely Apple mosaic virus (ApMV), Apple stem pitting virus (ASPV), Apple stem grooving virus (ASGV), Apple chlorotic leaf spot virus (ACLSV) and Apple scar skin viroid (ASSVd), was developed. Five specific primer pairs were tested and confirmed for these viruses and viroid together in a single tube, giving amplicons of ~198, ~330, ~370, ~547 and ~645 bp corresponding to ASGV, ASSVd, ASPV, ApMV and ACLSV, respectively. Using a guanidinium-based extraction buffer along with a commercial kit resulted in better quality RNA as compared to kit, suited for multiplex RT-PCR. A rapid CTAB method for RNA isolation from apple tissue was developed, which produce good yield and saves time. To the best of our knowledge, this is the first report on the simultaneous detection of five pathogens (four viruses and a viroid) from apple with NADH dehydrogenase subunit 5 (nad5) as an internal control.     

Molecular Characterization and Distribution of Apple Chlorotic Leaf Spot Virus on Apple in China

Apple chlorotic leaf spot virus (ACLSV) is one of the most economically important latent viruses infecting apple in China. This is the first report of the almost complete nucleotide sequence and the characterization of the genome of a Chinese isolate (ACLSV‐MS, GenBank Accession Number KC847061 ) from apple. Based on the genome nucleotide sequence, ACLSV‐MS showed the highest identity (99.4%) to isolate ACLSV‐B6 (GenBank Accession Number AB326224 ) from apple in Japan and the least identity (69.5%) with isolate TaTao5 (GenBank Accession Number: EU223295 ) from peach in the USA. The occurrence and distribution of ACLSV in China were also recorded. Three hundred and twenty‐seven apple samples (40 different cultivars) collected from 56 sites in 13 provinces of China were tested by RT‐PCR. The virus was detected in all regions surveyed (the provinces of Heilongjiang, Liaoning, Hebei, Beijing, Henan, Shanxi, Shaanxi, Shandong, Gansu, Ningxia, Xinjiang, Sichuan and Yunnan), with an average incidence of 69.7%. The positive samples in Heilongjiang province were highest with an incidence of 100% followed by Henan province with an incidence of 86.7%. The positive samples in Liaoning and Shanxi were the lowest with an incidence of 50%. The occurrence of virus in five common cultivars was determined. The percentage of ACLSV was highest in cv. Gala with an incidence of 33.3%, while lowest in cv. Starking with an incidence of 18.2%. It was also found in younger (≤20 years) apple orchards the occurrence of ACLSV decreased with the increase of tree age, but when trees were more than 20 years old, the occurrence of ACLSV increased. This is the first extensive survey in the last decade in China for monitoring ACLSV, which provides important information for ACLSV control in China.     

Apple mosaic virus isolated from hop plants in Japan

A strain of apple mosaic virus was isolated from hop plants in Japan. The virus was purified from young hop plants and back-inoculated to virus-free hop plants obtained by meristem tip culture. Inoculated plants developed chlorotic spots, ringspots and a band pattern accompanied by necrosis in the inoculated and systemically infected leaves. Shoot tips of infected plants sometimes became necrotic and these symptoms resembled those of a ring- and band-pattern mosaiclike disease prevalent in hop gardens in Japan. Since apple mosaic virus was recovered from infected plants, it is likely that the virus was the causal agent of this disease. Agar gel double diffusion tests and ELISA showed the hop virus to be serologically closely related to apple mosaic virus (ApMV), and distantly related to prunus necrotic ringspot virus (PNRSV). The virus had a narrow host range, and infected only cucumber of 18 species of Cucurbitaceae, Chenopodiaceae, Leguminosae or Solanaceae inoculated. It produced chlorotic spots on the inoculated cotyledons of cucumber, but no systemic infection. By contrast, ApMV from apple and PNRSV from peach had wide host ranges and infected cucumber plants systemically.     

“Candidatus Phytoplasma asteris” and “Candidatus Phytoplasma mali” strains infecting sweet and sour cherry in the Czech Republic

A survey for phytoplasma diseases was conducted in a sweet and sour cherry germplasm collection and in cherry orchards within the Czech Republic during 2014–2015. Phytoplasmas were detected in 21 symptomatic trees. Multiple infections of cherry trees by diverse phytoplasmas of 16SrI and 16SrX groups and 16SrI‐A, 16SrI‐B, 16SrI‐L, 16SrX‐A subgroups were detected by restriction fragment length polymorphism (RFLP). Nevertheless, phylogenetic analysis placed subgroups 16SrI‐B and 16SrI‐L inseparable together onto one branch of phylogenetic tree. This is the first report of subgroups 16SrI‐A and 16SrI‐L in Prunus spp., and subgroup 16SrX‐A in sour cherry trees. Additionally, novel RFLP profiles for 16SrI‐A and 16SrI‐B‐related phytoplasmas were found in cherry samples. Phytoplasmas with these novel profiles belong, however, to their respective 16SrI‐A or 16SrI‐B phylogenetic clades.     

Rapid detection and serotyping of prunus necrotic ringspot virus in perennial crops by enzyme-linked immunosorbent assay

Strains of prunus necrotic ringspot virus (NRSV) in hop and plum cultivars were rapidly and conveniently detected and serotyped by enzyme-linked immunosorbent assay. Antisera produced against the G isolate of NRSV from cherry and the Paradise isolate of apple mosaic virus (ApMV) from apple were used concurrently to ensure detection of all serotypes and to differentiate between them. Both NRSV and ApMV serotypes occurred in plum either as single or mixed infections. By contrast, the NRSV serotype was not found in hop, which contained either ApMV or a serotype intermediate between NRSV and ApMV.     

The incidence of virus diseases in English sweet-cherry orchards and their effect on yield

Two thousand sweet-cherry trees (Prunus avium) in English orchards were tested for virus infection by using Lambert and Mazzard F 12/1 as indicators. Most trees of varieties commonly grown before 1920 were infected with more than one virus, usually little cherry (69%) and necrotic ringspot/prune dwarf (56%). Other infection was less prevalent, 35% of these trees having European rusty mottle, 30% ring mottle and 3% necrotic rusty mottle. Most trees of varieties introduced since 1920 were virus-free (61%) but some had become infected with each of these viruses except necrotic rusty mottle. In a field trial of 12 years duration the yield of three varieties was diminished by infection with necrotic ringspot/prune dwarf, rugose mosaic, rusty mottle, ring mottle and necrotic line pattern. The effect of rusty mottle was due to growth suppression resulting in smaller trees, but that of other viruses was also due to impaired fertility. The yield of one variety (Merton Heart) was greatly enhanced by infection with rugose mosaic, rusty mottle and necrotic ringspot/prune dwarf viruses. The high incidence of virus infection and consequent yield depression has probably diminished the potential yield by at least 30% and contributed to the decline in acreage of sweet cherries in England.     

Incidence of Prunus necrotic ring spot virus on Malus domestica in India

In surveys of apple (Malus domestica) orchards in various parts of Himachal Pradesh, samples from trees showing necrotic symptoms on the leaves were collected and tested for detection of Prunus necrotic ringspot virus (PNRSV) initially by ELISA followed by RT‐PCR using coat protein gene primers. Positive results were obtained in samples from Kullu and Kalpa regions. The virus gene sequences showed 88–97% similarity to corresponding sequences of other PNRSV isolates deposited in the GenBank database using ncbi.nih.nlm.gov. Although the similarity was high, there were some distinct differences with the Spanish isolate. This is the first report of PNRSV in apple from India.     

Studies on rose mosaic disease in field-grown roses produced in the United Kingdom

Arabis mosaic virus (AMV) and prunus necrotic ringspot virus (PNRSV), separately or together, caused in field-grown roses the range of symptoms recognised as rose mosaic disease. PNRSV infection alone generally induced chlorotic line patterns, ring-spots or mottles in the leaves at some time during the growing season; AMV plus PNRSV normally caused chlorotic vein-banding. However, during prolonged periods of high temperatures (c. 21 °C or more) vein banding occurred in some roses infected only with PNRSV. Isolates of PNRSV from rose had particles which were similar in shape, protein mol. wt, density and sedimentation coefficients to previously described isolates of PNRSV from cherry, plum and rose; all were cherry serotypes. In graft-inoculated roses, apple serotypes of PNRSV induced stunting and chlorosis, puckering and distortion of leaves, which closely resembled symptoms associated with rose mosaic in the USA and chlorotic mottle rose mosaic in New Zealand. To avoid possible confusion in using the name rose mosaic it is suggested that the virus(es) present in roses should be named.     

Serological Comparison of Isolates of Cherry Leaf Roll Virus from Diseased Beech and Birch Trees in a Forest Decline Area in Germany with Other Isolates of the Virus

Abstract Two isolates of cherry leaf roll virus (CLRV), one from diseased beech and one from diseased birch trees in an area with forest decline near Bonn in West Germany, were found to be serologically closely related, but not indentical as assessed by spurformation of precipitin lines in agarose gel double diffusion tests. Such tests also distinguished these German CLRV isolates from ten other distinct CLRV isolates obtained from different natural hosts and from various countries. The German beech isolate was most similar serologically to isolates from walnut and from birch in England and the German birch isolate to an English cherry isolate and an isolate from Sambucus racemosa in Finland. These results provide further evidence of the antigenicdiversity of CLRV.     

Comparison of Methods for Characterizing and Distinguishing Isolates of Prune Dwarf Virus

A virus isolated from sour cherry trees with reduced growth in an orchard near Frankfurt/Main was shown by symptomatology, serology and various other tests to be strain of prune dwarf virus (PDV). A comparison of two isolates of this virus with three other PDV isolates already described by other authors indicated that groupings of the viruses made on the basis of symptomatology or component ratios determined by density gradient centrifugation were inconsistent and not reliable. However, electrophoresis in a sugar gradient or immuno-electrophoresis appeared to offer a satisfactory means of characterizing the viruses and of assigning the isolates to one of three biologically different groups of the virus.     

The isolation and identification of rhubarb viruses occurring in Britain

Virus-like symptoms were common in British crops of rhubarb. All plants tested of the three main varieties, ‘Timperley Early’, ‘Prince Albert’ and ‘Victoria’, were virus-infected. Turnip mosaic virus and a severe isolate of arabis mosaic virus (AMV) were obtained from ‘Timperley Early’; and ‘Prince Albert’ contained turnip mosaic virus, cherry leaf roll virus (CLRV), a mild isolate of AMV and, infrequently, cucumber mosaic virus (CMV). The main commercial variety ‘Victoria’ contained turnip mosaic virus, CLRV, a mild isolate of AMV and, infrequently, strawberry latent ringspot virus (SLRV). All the viruses were identified serologically. The rhubarb isolates did not differ markedly from other isolates of these viruses in herbaceous host reactions, properties in vitro or particle size and shape. A rhubarb isolate of CLRV was distinguished serologically from a cherry isolate of the virus. Turnip mosaic virus, CLRV and SLRV, were transmitted with difficulty, but AMV isolates were readily transmitted by mechanical inoculation. Turnip mosaic virus was also transmitted to rhubarb by Myzus persicae and Aphis fabae. CLRV was transmitted in 6–8% of the seed of infected ‘Prince Albert’ and ‘Victoria’ rhubarb and in 72% of the seed of infected Chenopodium amaranticolor. Mild isolates of AMV were also transmitted in 10–24% of the seed of infected ‘Prince Albert’ and ‘Victoria’ plants.     

Identification and Genomic Variability of Prune dwarf virus Variants Infecting Stone Fruit Trees in Turkey

Prune dwarf virus (PDV), a pathogen of stone fruit trees worldwide, shows a great variability in its biological, serological and molecular properties. The coat protein sequences of ten PDV variants from different stone fruit tree species in Turkey were determined. The sequence for each variant was 657 nucleotides in length. The phylogenetic analyses of the sequences of the Turkish variants and of additional sequences of other PDV variants from international databases indicate the existence of four groups of PDV variants: one contains cherry variants that differs in group specific conserved amino acids; a second contains one apricot and cherry variants, most members of the group being Turkish variants; a third contains mixed variants from cherry, peach, plum trees and an almond tree; and a fourth contains only variants from almond trees. Based on their hosts, we propose the nomenclature of these groups as cherry I, cherry II, mixed and almond groups, respectively.