Morphological and molecular characterization of a new species of leech (Glossiphoniidae,Hirudinida): Implications for the health of its imperiled amphibian host (Cryptobranchus alleganiensis)

The hellbender (Cryptobranchus alleganiensis) is among the most intriguing and imperiled amphibians in North America. Since the 1970s and 80s, western populations of the Ozark and eastern subspecies in Missouri have declined by nearly 80%. As a result of population declines, the Ozark hellbender was recently federally protected as an endangered species, and the eastern subspecies was granted protection under CITES. Although habitat degradation is probably the biggest threat to hellbender populations, recent evidence suggests that pathogens including chytrid fungus and “flesh-eating” bacteria may also contribute to declines in Ozark hellbenders. Leeches, which are very common on Ozark hellbenders, have recently been implicated as possible vectors of disease among Ozark hellbenders but have not been described in eastern hellbenders or outside of Missouri and Arkansas. We discovered a population of leeches on eastern hellbenders in southwest Virginia and confirmed that the species of leech is within the genus Placobdella, but is morphologically and genetically distinct from all previously described leech species. We named the new species Placobdella appalachiensis sp. n. Moser and Hopkins, based on the mountainous region in which it was discovered. Our surveys over a three consecutive year period suggested that this leech species may be patchily distributed and/or have a narrow geographic range. We consistently detected leeches at one site (mean prevalence in 80 hellbenders = 27.5%; median intensity = 3.0 leeches per parasitized hellbender [range 1 – >250 leeches]) during three years of surveys, but we never found leeches in any of our other seven study sites in two streams (mean prevalence in 139 hellbenders = 0%). We found a significant positive relationship between hellbender body size and the intensity of parasitism, and we suggest the possibility that the behavioral ecology of adults leading up to reproduction may increase their encounter rates with parasites. We discuss the potential conservation implications of discovery of leeches in this stream, and make recommendations for future mitigation and monitoring efforts.     

Within-river gene flow in the hellbender (Cryptobranchus alleganiensis) and implications for restorative release

Understanding how populations are genetically and demographically connected is beneficial for species management, since gene flow and dispersal contribute to genetic diversity and population persistence. For hellbenders (Cryptobranchus alleganiensis), an aquatic salamander species experiencing dramatic declines in population size, fine-scale (i.e. within river) patterns of genetic diversity and gene flow are not well understood. Previous findings indicate that hellbenders are habitat specialists that exhibit extreme site fidelity and low vagility, suggesting that gene flow is restricted among the several, discrete habitat patches within a river. Using 15 polymorphic microsatellite loci and 497 hellbender samples from four Missouri rivers, we assessed fine-scale patterns of genetic diversity in order to infer population connectivity and aid in population management. Results indicate moderate levels of genetic variation (H_O = 0.66–0.78) with little differentiation among habitat patches (avg. F_ST = 0.002) and no evidence of isolation by distance. Our data suggest that hellbender gene flow has been extensive even among habitat patches separated by distances greater than >100 km. These results are useful for hellbender management, especially in terms of making informed decisions regarding restorative releases of captively propagated individuals.     

Genetic relationships of hellbenders in the Ozark highlands of Missouri and conservation implications for the Ozark subspecies (<Emphasis Type="Italic">Cryptobranchus alleganiensis bishopi</Emphasis>)

The hellbender (Cryptobranchus alleganiensis) is an obligately aquatic salamander that is in decline due to habitat loss and disease. Two subspecies of hellbender have been described based on morphological characteristics: C. a. alleganiensis (eastern subspecies) and C. a. bishopi (Ozark hellbender). Current conservation strategies include captive propagation for restorative releases even though information regarding the current levels of genetic variability and structure within populations is not sufficient to effectively plan for conservation of the genetic diversity of the species. To investigate patterns of population structure in the hellbender, we genotyped 276 hellbenders from eight Missouri River drainages, representing both subspecies. Our results showed low levels of within-drainage diversity but strong population structure among rivers, and three distinct genetic clusters. F _ST values ranged from 0.00 to 0.61 and averaged 0.40. Our results confirmed previous reports that C. a. bishopi and C. a. alleganiensis are genetically distinct, but also revealed an equidistant relationship between two groups within C. a. bishopi and all populations of C. a. alleganiensis. Current subspecies delineations do not accurately incorporate genetic structure, and for conservation purposes, these three groups should be considered evolutionarily significant units.     

Multi-scale effects of resource patchiness on foraging behaviour and habitat use by longnose dace, Rhinichthys cataractae

1. We examined the response of a predatory benthic fish, the longnose dace ( Rhinichthys cataractae ), to patchiness in the distribution of benthic macroinvertebrates on cobbles at three hierarchical spatial scales during summer and autumn 1996, and spring 1997 in a southern Appalachian stream. 2. At the primary scale (four to five individual cobbles separated by <1 m), the intensity of foraging was not correlated with the biomass of benthic macroinvertebrates/cobble, regardless of season. 3. At the secondary scale (i.e. foraging patches <5 m in diameter) we found that benthic macroinvertebrates were patchily distributed in summer, but not in autumn or spring. Concomitantly, in summer, longnose dace foraged on cobbles with a significantly higher biomass of benthic macronvertebrates than nearby, randomly selected cobbles with similar physical conditions (i.e. longnose dace tended to avoid low-prey foraging patches). In contrast, when benthic macroinvertebrates were distributed homogeneously (spring and autumn), dace did not select patches with a significantly higher biomass of benthic macroinvertebrates than that available on randomly selected cobbles. 4. At the tertiary scale (i.e. stream reaches 11–19 m long), the biomass of benthic macroinvertebrates (per cobble per reach) was patchily distributed (i.e. differed significantly among reaches) in all seasons. Among reaches with physical characteristics preferred by longnose dace, (i.e. erosional reaches dominated by cobble/boulder substratum and high current velocity), we detected a significant, positive correlation between the biomass of benthic macroinvertebrates/cobble and longnose dace density in all seasons. 5. Our results demonstrated that both spatial and temporal patchiness in resource availability influenced significantly the use of both foraging patches and stream reaches by longnose dace.     

Disturbance history influences the distribution of stream invertebrates by altering microhabitat parameters: a field experiment

1. We investigated the effects of local disturbance history and several biotic and abiotic habitat parameters on the microdistribution of benthic invertebrates after an experimental disturbance in a flood‐prone German stream. 2. Bed movement patterns during a moderate flood were simulated by scouring and filling stream bed patches (area 0.49 m²) to a depth of 15–20 cm. Invertebrates were investigated using ceramic tiles as standardized substrata. After 1, 8, 22, 29, 36 and 50 days, we sampled one tile from each of 16 replicates of three bed stability treatments (scour, fill and stable controls). For each tile, we also determined water depth, near‐bed current velocity, the grain size of the substratum beneath the tile, epilithic algal biomass and standing stock of particulate organic matter (POM). 3. Shortly after disturbance, total invertebrate density, taxon richness and density of the common taxa Baetis spp. and Chironomidae were highest in stable patches. Several weeks after disturbance, by contrast, Baetis spp. and Hydropsychidae were most common in fill and Leuctra spp. in scour patches. The black fly Simulium spp. was most abundant in fill patches from the first day onwards. Community evenness was highest in scour patches during the entire study. 4. Local disturbance history also influenced algal biomass and POM standing stock at the beginning of the experiment, and water depth, current velocity and substratum grain size throughout the experiment. Scouring mainly exposed finer substrata and caused local depressions in the stream bed characterized by slower near‐bed current velocity. Algal biomass was higher in stable and scour patches and POM was highest in scour patches. In turn, all five common invertebrate taxa were frequently correlated with one or two of these habitat parameters. 5. Our results suggest that several ‘direct’ initial effects of local disturbance history on the invertebrates were subsequently replaced by ‘indirect’ effects of disturbance history (via disturbance‐induced changes in habitat parameters such as current velocity or food).     

A long-term mesocosm study on the settlement and survival of juvenile European lobster Homarus gammarus L. in four natural substrata

To date, the natural substratum preferences of early benthic phase (EBP) European lobsters (Homarus gammarus) remain largely unknown. This study utilised a large scale mesocosm experiment to determine if the animal favours cobble ground, similar to its American counterpart (Homarus americanus), or has other substratum preferences. Postlarvae were provided with the choice of settling on four natural substrata: sand, coralline algae, mussel shell and cobble. Over a nine month period, the number and size of juveniles on each substratum was recorded, with loss of chelipeds used as an indication of social interaction. After a 30 day period, a non-random distribution of lobsters was observed on the four substrata. Juveniles were more abundant in substrata which provided pre-existing shelter in the form of interstitial spaces, i.e. cobble and mussel shell, than in sand or coralline algae. The survival of individuals from postlarvae to 30 day old juveniles ranged from 5 to 14% with surviving benthic recruits showing a clear mode at 6-8 mm carapace length (CL) in size distribution. The density of lobsters per m(2) of cobble remained relatively constant (18/m(2)) throughout the study period while the density of juveniles on mussel shell decreased significantly (35 to 5/m(2)). The size distribution of lobsters on each substratum also varied with time. By the conclusion of the trial, lobsters found in mussel shell had a mode of 8-10 mm CL within a range of 6-14 mm CL while those in cobble had a mode of 10-12 mm CL within a range of 8-24 mm CL. Overall, the results underline the importance of shelter-providing habitat such as cobble or crevice-type substrata to EBP European lobsters. They also confirm that for a shelter-dwelling animal such as a lobster, the physical structure of the habitat is a key factor in determining both the size and number of its inhabitants.     

Innate Predator Recognition and the Problem of Introduced Trout

Innate predator recognition typically only occurs when there is an evolutionary history between predator and prey. Predator introductions thus can pose a substantial threat to native fauna that rely heavily on inherent identification of predators. In permanent aquatic habitats prey often encounter a variety of predatory and non-predatory fish species, and the ability to distinguish between the two is essential to avoid wasted time and energy spent in unnecessary antipredatory efforts. Here, we present a study evaluating the ability of lab-reared larvae of an endangered fully aquatic salamander (hellbenders: Cryptobranchus alleganiensis ) to recognize chemical cues from native and introduced fish predators. We recorded responses of hellbender larvae to chemical stimuli from native and non-native predatory fishes, a non-predatory fish and a blank control. Eastern hellbender larvae ( C. a. alleganiensis ) significantly reduced activity in response to chemical stimuli from native predators ( Micropterus salmoides , Micropterus dolomieu , Ambloplites rupestris , Sander vitreus , and Cottus carolinae ), but responses to non-native rainbow ( Oncorhynchus mykiss ) and brown ( Salmo trutta ) trout were not significantly different from responses to the non-predatory control (redhorse sucker, Moxostoma spp.). Responses of larval Ozark hellbenders ( C. a. bishopi ) to brown trout were similar to that of the native fishes and different from the blank control, but responses to rainbow trout did not differ from the blank control. The generally weak responses of larval hellbenders to chemical cues from introduced predatory trout could lead to increased predation in the wild, which may have exacerbated the decline of hellbender populations.     

Searching for the early benthic phase (EBP) of the European lobster: a trans-European study of cobble fauna

The re-stocking or enhancement of Homarid populations has been the focus of several research projects in recent years. However, despite being able to successfully rear lobsters in captivity, there are few reports of newly settled European lobsters (Homarus gammarus) in the wild. This is of serious concern for fishery managers when trying to ascertain if restocking or enhancement programmes are successful at the fishery level. Based on published work from the western Atlantic seaboard, cobble and boulder substrata have been identified as an important nursery habitat for early benthic phase (EBP) American lobsters (Homarus americanus). This paper, based on an E.U. funded research project (LEAR), describes the results of quantitative airlift suction sampling from cobble habitat in Norway, Ireland the U.K., and Italy. In total, 67 m² of cobble was sampled, but no EBP lobsters were found. Overall, crustaceans and molluscs were the most abundant species in all countries. While the collective densities of animals per m²of cobble were similar to that of the United States, the species diversity in Europe was noticeably higher. Among the crustacea, the reptant decapods dominated at all sites. These findings tend to support the modern day `exclusion hypothesis' that competition and predation from other species limits the successful recruitment of EBP European lobster to the benthos. The results highlight the need to go beyond the single species approach to understanding the factors that influence the recruitment of Homarus gammarus.     

LINKING BENTHIC ALGAL BIOMASS TO STREAM SUBSTRATUM TOPOGRAPHY1

The physical properties of substrata significantly influence benthic algal development. We explored the relationships among substratum surface texture and orientation with epilithic microphytobenthic biomass accumulation at the whole‐substratum and micrometer scales. Unglazed clay tiles set at three orientations (horizontal, vertical, and 45°), and six substrata of varying surface roughness were deployed in a prairie stream for 3 weeks. Substrata were analyzed for loosely attached, adnate, and total benthic algal biomass as chl a, and confocal laser scanning microscopy was used to measure substrata microtopography (i.e., roughness, microscale slope angles, and three‐dimensional surface area). At the whole‐substratum level, vertical substrata collected significantly (P < 0.05) less algal biomass, averaging 34% and 36% less than horizontal and 45° substrata, respectively. Benthic algal biomass was also significantly less on smoother surfaces; glass averaged 29% less biomass than stream rocks. At the microscale level, benthic algal biomass was the greatest at intermediate values, peaking at a mean roughness of approximately 17 μm, a mean microscale slope of 50°, and a projected/areal surface area ratio of 2:1. The proportion of adnate algae increased with surface roughness (26% and 67% for glass and brick, respectively), suggesting that substratum type changes the efficiency of algal removal by brushing. Individual substrata and microsubstrata characteristics can have a strong effect on benthic algae development and potentially affect reach scale algal variability as mediated by geomorphology.     

Size‐dependent microhabitat use and intraspecific competition in Cottus gobio

An electrofishing survey of daytime shelter microhabitat use of bullhead Cottus gobio in a southern English chalk stream revealed positive selection for moderate water velocity, vegetation cover and coarse substrata. Water depth, other forms of cover, shade and substratum embeddedness had no significant influence on the distribution of fish. Microhabitat use was size‐dependent, with patches occupied by adult fish containing coarser substrata and less blanket weed ( Cladophora algae) than those occupied by smaller juvenile conspecifics. Differences in substratum use between size‐classes were less pronounced in parts of the stream shaded by the tree canopy. In laboratory tanks stocked at low fish density, both juveniles and adults favoured use of cobbles over pebbles. The response of fish to increased conspecific density was size‐dependent; juveniles reduced use of the coarse substratum whereas adults maintained their predominance in this habitat. An apparently greater shift by juveniles when in the presence of adults was significant at α = 0·10 only, as was an apparent reduction in interactions between size‐classes under low light intensity. The displacement of small juvenile fish from the preferred cobble substratum is consistent with the hypothesis that intraspecific competition contributes to the size‐related microhabitat shift observed in the field. Although there was a tendency for the strength of competition to be reduced at low light levels, the mechanism by which tree canopy cover affects microhabitat use remains uncertain.     

Production of benthic macroinvertebrate communities along a southern Appalachian river continuum

1. Annual production was estimated for macroinvertebrate communities of principle habitats along a first- to seventh-order river continuum in the southern Appalachian Mountains (U.S.A.). Annual production was relatively low in depositional habitats, pebble/gravel substrata, and on cobble devoid of plant biomass (mosses and hydrophytes). Production was greater in bedrock habitats and greatest on hydrophyte-covered cobble, with estimates reaching 364 g AFDM (ash-free dry mass)m^–2 yr^–1 in a sixth-order river reach. Annual production in depositional habitats was correlated to standing crops of benthic organic material (BOM) in low-order stream reaches but not in higher-order reaches, indicating differences in BOM availability with stream size. In cobble, pebble/gravel and bedrock habitats production was significantly correlated to standing crops of aquatic plants, which can stabilize substrata and enhance access of collector-filtering invertebrates to entrained food resources. 2. By accounting for proportional availability of habitats along the continuum, estimates of total production ranged from 5 to 154 g AFDM m^–2 yr^–1, and increased significantly with stream size. Annual production estimated for sixth- and seventh-order reaches of the continuum were amongst the highest reported thus far for lotic systems. Organization of the benthic community along the continuum, based on production estimates for individual functional feeding-groups, generally supported predictions of the River Continuum Concept (RCC): shredder contributions were greatest in low-order reaches and declined downstream; scraper percentages were greatest in the middle of the continuum; collector-filterer contributions increased with increasing stream size. Longitudinal trends for collector-gatherers and predators did not support RCC predictions; these groups appeared to be influenced by localized changes in habitat availability and occurrence of vertebrate predators along the continuum.     

Stream geomorphology regulates the effects on periphyton of ecosystem engineering and nutrient enrichment by Pacific salmon

1. Pacific salmon (Oncorhynchus spp.) returning to streams deliver substantial quantities of nutrients (nitrogen and phosphorus) that may stimulate primary production. Salmon can also affect the phytobenthos negatively via physical disturbance during nest excavation, a process that may counteract the positive effects of salmon‐derived nutrients on benthic algae. The ability of salmon to disturb benthic habitats may be a function of substratum particle size, and therefore, the geomorphology of streams could determine the net effect of salmon on benthic communities. 2. Based on surveys of 17 streams in southwest Alaska before the salmon run and during peak salmon density, we identified size thresholds for the disturbance of substratum particles by salmon and classified particles as vulnerable (<60 mm B‐axis), invulnerable (>110 mm) or transitional (61–110 mm). At the scale of individual rocks, algal biomass on vulnerable substrata decreased at peak spawning (relative to values before the run) as a power function of salmon density; transitional and invulnerable substrata showed no quantifiable pattern. However, invulnerable substrata in streams with more than 0.11 salmon m^?2 showed net algal accrual, or relatively smaller declines in algal biomass, than vulnerable substrata, indicating that large rocks provide refuge for benthic algae from salmon disturbance. 3. We expected that streams with proportionally larger rocks would respond positively to salmon at the whole‐stream scale, after accounting for the relative abundance of rocks of different sizes within streams. Invulnerable rocks made up only 0–12% of the total substratum particle size distribution in salmon‐bearing streams, however, and algal accrual on invulnerable substrata did not outweigh the strong disturbance effects on the more spatially extensive vulnerable substrata. The change in whole‐stream benthic algal biomass among streams was negatively related to salmon density. 4. Stable isotopes of nitrogen (δ¹⁵N) were used to track nutrients from salmon into benthic biota. Periphyton δ¹⁵N on rocks of all size classes was higher at peak salmon spawning than before the salmon run, indicating the uptake of salmon‐derived nitrogen. Peak δ¹⁵N values were positively related to salmon abundance and followed a two‐isotope mixing relationship. The per cent of N from salmon in periphyton was also related to salmon density and was best explained by a saturating relationship. Spring δ¹⁵N was unrelated to salmon returns in the previous year, suggesting little annual carryover of salmon nutrients.     

Substratum preferences of settling larvae of marine fishes reared in the laboratory

Various species of marine fish larvae were reared in the laboratory to allow observation of the substratum preferences of newly settling fish. The range of preferences for settling larvae of intertidal species corresponded to the adult niche breadth. The preferred substratum was always an element of the adult habitat, although not necessarily the same substratum preferred by the adults. Experiments with artificial substrata indicated that settlement preferences are based on tactile cues and light transmission. Depending upon the species, other factors such as current speed or salinity can also influence settlement.     

Community‐level effects of co‐occurring native and exotic ecosystem engineers

1. Non‐indigenous ecosystem engineers can substantially affect native biodiversity by transforming the physical structure of habitats. In the Great Lakes–St. Lawrence River system, introduced dreissenid mussels (Dreissena polymorpha and D. bugensis) and the native benthic macroalga Cladophora act as ecosystem engineers by increasing substratum complexity and providing interstitial habitat for benthic macroinvertebrates. 2. We manipulated the topography and perimeter‐to‐area ratio of patches of dreissenid mussels in a series of colonisation experiments conducted at two sites in the St. Lawrence River. Experimental substrata were variably colonised by Cladophora, prompting us to examine (i) how the topography of Dreissena patches affects benthic macroinvertebrate diversity and (ii) the extent to which the effects of Dreissena are altered by the presence of another habitat‐modifying organism (Cladophora). 3. The results of our first experiment suggested that a patchy distribution of dreissenid mussels is an important driver of benthic diversity at small spatial scales. The results of our second and third experiments suggested that a native habitat engineer, Cladophora, modifies the impact of Dreissena on benthic macroinvertebrate communities. 4. While macroalgal blooms have been linked to the large‐scale impacts of Dreissena on light and nutrient availability, Dreissena shells inhibited Cladophora growth at our experimental scale. These findings demonstrate that the interactions between habitat‐modifying species can complicate efforts to predict the community‐level effects of an invasion.     

The role of drift and effect of season on macroinvertebrate colonization of implanted substrata in a tropical Australian stream

SUMMARY 1. Experiments using implanted substrata were conducted in Yuccabine Creek, a n upland stream in north-eastern Australia which exhibits a strong seasonal pattern of discharge and temperature. The implanted substrata were either set in the stream bed or were raised in the water column. Three experiments were run, at different times of the year.
2. Colonization rate was dependent on benthic abundance, mobility of the fauna and distribution of resources. The rates on embedded trays were similar in the late wet season and mid dry season, but colonization rate in the late dry season was greater.
3. Drift alone could have accounted for all colonization in the late wet season, 63% of colonization in the mid dry season and less (unmeasured) in the late dry season. Drift acts to disperse early instars to patches of suitable habitat after the summer wet-season peak in reproduction.
4. Following the wet season, stream discharge decreases, benthic abundance increases, resources become more concentrated, and movements of animals in contact with the substratum play an increasingly important role in colonization.     

Benthic organic carbon influences denitrification in streams with high nitrate concentration

1. Anthropogenic activities have increased reactive nitrogen availability, and now many streams carry large nitrate loads to coastal ecosystems. Denitrification is potentially an important nitrogen sink, but few studies have investigated the influence of benthic organic carbon on denitrification in nitrate‐rich streams. 2. Using the acetylene‐block assay, we measured denitrification rates associated with benthic substrata having different proportions of organic matter in agricultural streams in two states in the mid‐west of the U.S.A., Illinois and Michigan. 3. In Illinois, benthic organic matter varied little between seasons (5.9–7.0% of stream sediment), but nitrate concentrations were high in summer (>10 mg N L⁻¹) and low (<0.5 mg N L⁻¹) in autumn. Across all seasons and streams, the rate of denitrification ranged from 0.01 to 4.77 μg N g⁻¹ DM h⁻¹ and was positively related to stream‐water nitrate concentration. Within each stream, denitrification was positively related to benthic organic matter only when nitrate concentration exceeded published half‐saturation constants. 4. In Michigan, streams had high nitrate concentrations and diverse benthic substrata which varied from 0.7 to 72.7% organic matter. Denitrification rate ranged from 0.12 to 11.06 μg N g⁻¹ DM h⁻¹ and was positively related to the proportion of organic matter in each substratum. 5. Taken together, these results indicate that benthic organic carbon may play an important role in stream nitrogen cycling by stimulating denitrification when nitrate concentrations are high.     

THE SEASONAL DISTRIBUTION,ABUNDANCE AND DIVERSITY OF DESMIDS (CHLOROPHYTA) IN A SOFTWATER,NORTH TEMPERATE STREAM1

Suspended and benthic algal communities from a mildly acidic, third-order Rhode Island stream were examined to determine the seasonal distribution, abundance and diversity of the lotic desmids. Within a one-year sampling period, 148 species and 202 subspecific taxa of desmids were identified, representing 23 genera. Species of Cosmarium and Closterium accounted for approximately 70% of the desmids present, and were the most diverse and abundant taxa during all seasons except spring, when Hyalotheca dissiliens was the dominant desmid species. Average abundance and species richness generally were greatest during summer for both suspended and benthic desmids. Most desmids occurred in benthic habitats, and were randomly distributed among substrata. Average seasonal abundance was 7.4 × 10⁴ cells·g^?1 dry wt substratum, among 13 types of substrata. Highest desmid abundance was measured among substrata with intricate morphologies, such as Fontinalis spp., which was associated with 1.2 × 10⁶ desmid cells·g^?1 dry wt substratum, or 1.7 × 10³ cells·cm^?2 substratum. Cell division was observed for 70 desmid taxa, and average seasonal reproduction (based on cell numbers) among all substrata ranged from 4% in winter to 20% during summer. In addition, sexually produced zygospores were found occasionally for H. dissiliens. Desmids were distributed among most substrata examined in this stream, with abundance comparable to reported estimates from softwater lakes and acid bogs. In contrast to established dogma, lotic desmids are not incidental drift organisms, but rather comprise a viable and persistent component of the stream periphyton.     

Gravel dredging alters diversity and structure of riverine fish assemblages

1. Human activities affect fish assemblages in a variety of ways. Large‐scale and long‐term disturbances such as in‐stream dredging and mining alter habitat and hydrodynamic characteristics within rivers which can, in turn, alter fish distribution. Habitat heterogeneity is decreased as the natural riffle–pool–run sequences are lost to continuous pools and, as a consequence, lotic species are displaced by lentic species, while generalist and invasive species displace native habitat specialists. Sediment and organic detritus accumulate in deep, dredged reaches and behind dams, disrupting nutrient flow and destroying critical habitat for habitat specialist species. 2. We used standard ecological metrics such as species richness and diversity, as well as stable isotope analysis of δ¹³C and δ¹⁵N, to quantify the differences in fish assemblages sampled by benthic trawls among dredged and undredged sites in the Allegheny River, Pennsylvania, U.S.A. 3. Using mixed‐effects models, we found that total catch, species richness and diversity were negatively correlated with depth (P < 0.05), while species richness, diversity and proportion of species in lithophilic (‘rock‐loving’) reproductive guilds were lower at dredged than at undredged sites (P < 0.05). 4. Principal components analysis and manova revealed that taxa such as darters in brood hider and substratum chooser reproductive guilds were predominantly associated with undredged sites along principal component axis 1 (PC1 and manova P < 0.05), while nest spawners such as catfish and open substratum spawners including suckers were more associated with dredged sites along PC2 (P < 0.05). 5. Stable isotope analysis of δ¹³C and δ¹⁵N revealed shifts from reliance on shallow water and benthic‐derived nutrients at undredged sites to reliance on phytoplankton and terrestrial detritus at deep‐water dredged sites. Relative trophic positions were also lower at dredged sites for many species; loss of benthic nutrient pathways associated with depth and dredging history is hypothesised. 6. The combination of ecological metrics and stable isotope analysis thus shows how anthropogenic habitat loss caused by gravel dredging can decrease benthic fish abundance and diversity, and that species in substratum‐specific reproductive guilds are at particular risk. The effects of dredging also manifest by altering resource use and nutrient pathways within food webs. Management and conservation decisions should therefore consider the protection of relatively shallow areas with suitable substratum for spawning for the protection of native fishes.     

Spatial and Temporal Pattern of Caddisfly Distribution at a Mesohabitat Scale in two Patagonian Mountain Streams Subjected to Pastoral Use

Substrate, flow type, nutrients, aquatic vegetation, organic matter, and caddisfly community structure were studied at two low order streams (Glyn and Nant y Fall) subjected to pastoral use in the Patagonian mountains. At both sites, we examined the effect of habitat type (boulder‐pebble with and without filamentous algae, cobble‐pebble, gravel‐sand, leaf‐pack, the submerged macrophytes Myriophyllum quitense and Isoetes savatieri) and season (high and low water period) on caddisfly assemblages. Benthic particulate organic matter (BPOM) ranged between 4.6 and 472 g m^–2, all allochtonous detrital fractions were significantly higher at leaf‐packs at Glyn, whereas M. quitense habitats supported more BPOM and macrophytes biomass at Nant y Fall. As expected, boulder‐pebble sustained higher Trichoptera richness than M. quitense and gravel‐sand, moreover all habitats showed higher density than M. quitense at Nant y Fall. According to our results at least nine caddisfly species exhibited some habitat preference with boulder‐pebble and cobble‐pebble the most selected habitat. These particular habitats sustained more than 68% of the total caddisfly species. Multidimensional scaling ordination highlighted differences in composition per habitat for both sites showing a clear distinction among depositional and erosional habitats. Substrate, flow type, detritus biomass were important predictors defining assemblages. Based upon our findings, those anthropogenic actions or stressors that change hydraulic as well substrate attributes in mountain streams such as stock trampling, dredging, clearing of riparian areas, will reduce caddisfly richness. These results are relevant for outline management and conservation biomonitoring and schemes in headwater Patagonian streams as well as other similar environments worldwide (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

An assessment of juvenile Atlantic cod Gadus morhua distribution and growth using diver operated stereo‐video surveys

Stereo‐video scuba transects were conducted during daylight hours from June to September 2013 within a proposed marine protected area (MPA) in the Firth of Clyde, west of Scotland. More juvenile Atlantic cod Gadus morhua of fork length (L_F) range 6–11 cm were observed in substrata containing mixed gravel, including maerl, than in boulder‐cobble substrata with high algal cover, or sand with low density seagrass. Community composition was significantly different between substratum types. A decrease in G. morhua abundance was observed over the period of data collection. Over time, mean and variance in G. morhua L_F increased, indicating multiple recruitment events. Protecting mixed gravel substrata could be a beneficial management measure to support the survival and recruitment of juvenile G. morhua; other substrata might be important at night given their diel migratory behaviour. Stereo‐video cameras provide a useful non‐destructive fisheries‐independent method to monitor species abundance and length measurements.