Studies on the In Vitro Assembly of Bacteriophage φ80 and φ80-Lambda Hybrids

Suppressor-sensitive (sus) mutants of bacteriophage 80 defective in late functions were classified, by means of in vitro assembly tests, into two complementation groups: head donors and tail donors. Each group of mutants was subdivided, by means of two-factor crosses, into six cistrons. Deletion mapping revealed clustering of tail and also of head cistrons. The two clusters were located in the left arm of vegetative 80 (the tail specifying cluster being distal). In vitro cross complementation between 80 and lambda sus mutants revealed that whereas lambda heads could quite efficiently bind 80 tails to form viable phage, the union of 80 heads and lambda tails was very much less efficient. Deletion mapping of the 80 sus mutants, using both 80 and i⁸⁰h^λ deletion lysogens indicated congruent gross gene arrangement in the two related bacteriophages.     

Bacteriophage Lambda as a Delivery Vector for Tn10-Derived Transposons in Xenorhabdus bovienii

Xenorhabdus bovienii wild-type strains lack a functional receptor protein (LamB) in the outer membrane and as a result are unable to adsorb coliphage lambda (λ). Introduction of plasmids encoding lamB into X. bovienii T228 results in constitutive expression of LamB in the outer membrane of this organism. LamB-expressing strains of X. bovienii adsorb lambda bacteriophage particles and can be used as hosts for lambda::Tn constructs. A Tn10-derived transposon, element 9 (J. C. Way, D. Davis, D. Morisato, D. E. Roberts, and N. Kleckner, Gene 32:369-379, 1984) was used to construct a variety of insertion mutants of X. bovienii. Mutants that had altered expression of protease, lipase, DNase, dye-binding capability, and hemolytic activity, in addition to a series of auxotrophic mutants, were isolated.     

Analysis of the Role of Recombination and Repair in Mutagenesis of ESCHERICHIA COLI by Uv Irradiation

Multiple mutant strains have been tested for their mimicry of the UV-mutagenesis deficiency of a recA single mutant. Revertants to histidine prototrophy and clear plaque mutants of lambda were scored to determine capacity for UV-mutagenesis. Nearly normal capacity was shown by a uvr⁺ recB^- recF ^- strain, which shows almost no recA-dependent recombination, by uvr^- recB⁺ recF ^- strains, which show almost no recA-dependent repair and by a uvrA^- recB^- recF^- strain, which shows neither recA-dependent recombination nor repair. Since the uvr mutants can be assumed to show additionally no excision repair, these results may mean that UV-mutagenesis occurs during processes other than recombination and repair. Alternative hypotheses are discussed. The slight difference in mutagenic capacity was traced to the recF single mutation, which blocks the production of unmixed bursts of clear-plaque lambda mutants. Since this accounts for only about 10% of the mutations leading to clear-plaque mutants, it is suggested that there is more than one UV-mutagenic process.     

Transposition mutagenesis of bacteriophage lambda: a new gene affecting cell lysis.

Insertions of Tn903, a transposable kanamycin-resistance element, in bacteriophage lambda at 0.95 on the lambda physical map adversely affect growth of the phage. These insertion mutants are able to assemble particles, but are unable to lyse the infected cell properly. The mutants define a new genetic complementation group that we have designated as gene Rz. Cells infected with the λRz:: Tn903 isolates will, at the normal time of lysis, change their shape from a rod to a sphere. These spheres are stable in dilute buffers with Mg²⁺ but are lysed with EDTA. In addition, these results demonstrate the utility of transposition mutagenesis in refining the genetic map of even so intensely studied a genome as lambda.     

Characterization of T4 Mutants That Partially Suppress the Inability of T4rII to Grow in Lambda Lysogens

In the course of isolating viable T4 deletions that affect plaque morphology (Homyk and Weil 1974), two closely linked point mutants, sip1 and sip2, were obtained. They map between genes t and 52, cause a reduction in plaque size and burst size, and partially suppress the lethality of rII mutants for growth in lambda lysogens. These characteristics demonstrate that sip1 and sip2 are similar to mutants previously reported by Freedman and Brenner (1972). In addition, D. Hall (personal communication) has shown that sip1 and sip2 are similar to the mutant farP85, which affects the regulation of a number of early genes ( Chace and Hall 1975).——Sip suppression of rII mutants can be demonstrated in one-step growth experiments, even when both rII genes are completely deleted. This indicates that sip mutants do not simply reduce the level of rII gene products required for growth in a lambda lysogen. Instead, they alter the growth cycle so as to partially circumvent the need for any rII products.——Mutations at two other sites, designated L₁ and L₂, reverse the poor phage growth caused by sip and, in the one case tested, reverse the rII-suppressing ability of sip.     

Structure and inherent properties of the bacteriophage lambda head shell. II Isolation and initial characterization of prophage mutants defective in gene E

Prophage mutants defective in gene E of bacteriophage lambda were isolated and characterized to analyze the physiological functions of the major head protein (the gene E product). Seventy-one mutants were classified into the following five groups according to their phenotype under the electron microscope: two producing polyheads, two producing icosahedral structures and one producing no head-related structures detectable by electron microscopy. The former four phenotypes probably arose from defects in specific functional sites of the major head protein. Deletion mapping showed that some of the mutants belonging to the same phenotype mapped in distantly separated regions in gene E. Such regions may code for adjacent parts of the three-dimensional structure after folding of the polypeptide chain.     

Lambda CIN-1, a New Mutation Which Enhances Lysogenization by Bacteriophage Lambda, and the Genetic Structure of the Lambda CY Region

Seven lambda cy mutants have been mapped within a small region located approximately halfway between the rightward boundary of the imm⁴³⁴ region and the lambda cII gene. The seven mutants lie at four sites separated by a total distance of about 12 nucleotide pairs, as estimated from recombination frequencies. Six of the seven mutants lie on the right side of the cy fine structure map, spanning a total distance of about 3–5 nucleotide pairs. Lying approximately 11–21 nucleotide pairs to the left of the leftmost cy mutant is a newly described mutation called cin-1, for c independent. The cin-1 mutation allows some lysogenization when coupled with any cy, cII or cIII mutant, but not when coupled with a defective cI gene. The cin-1 mutation, like cy mutants, has a cis-dominant action upon the cI gene in mixed infections. The observation that λimm⁴³⁴ cin-1 cy2001 lysogenizes efficiently, but not λimm⁴³⁴ cin-1 cy2001 cII68 nor any other λimm⁴³⁴ cin-1 cy derivative, is interpreted to mean that all of the cy mutants on the right side of the cy fine structure map inactivate a binding site for cII/cIII function, but that cy2001, the single mutant on the left side of the cy fine structure map, does not inactivate that binding site.     

Reduced expression of a distal gene of the prn gene cluster in deletion mutants of Aspergillus nidulans: genetic evidence for a dicistronic messenger in an eukaryote.

Summary Temperature sensitive dnaAts46 mutants, in which initiation of chromosome replication is blocked at 42° C, are unable to maintain a dv plasmid at the permissive temperature unless the plasmid carries a mutation in gene P of the type permitting phage to grow in groP (dnaB) bacteria. The growth rate of dnaAts46 mutants seems to be impaired by the presence of the dvP mutant plasmid.Cold sensitive dnaAcos mutants which overinitiate replication at low temperature and grow normally only at 40° and above, can maintain efficiently dvP ⁺ plasmids as well as dvP mutants. Cold sensitivity of dnaAcos mutants is suppressed by the presence of the plasmid dvP ⁺ and by certain dvP mutants, but not by others.The gene P product seems to act by reducing the initiation potential of both types of dnaA mutants, aggravating the initiation defect in dnaAts46 and correcting the overinitiation of dnaAcos.     

Site-specific recombination Xis-independent excisive recombination of bacteriophage lambda

The integration of bacteriophage lambda into the Escherichia coli chromosome depends on the phage-encoded Int protein; prophage excision depends on Int and a second phage function, Xis. Limited excisive recombination has been observed in vivo with certain xis mutants, suggesting that Int may be able to carry out excision without Xis.We report here that purified Int protein carries out lambda site-specific excisive recombination in vitro in the absence of Xis. This reaction requires host factors derived from a non-lysogenic E. coli strain and is influenced strongly by ionic strength. Excision in the absence of Xis occurs slowly at low salt concentrations (40 mm-NaCl) and very little excision occurs at high salt concentrations (100 mm-NaCl). In the presence of Xis, excisive recombination proceeds rapidly at both low and high ionic strengths. These observations are consistent with previous experiments that suggested the partial dispensability of Xis for excision.     

Fine Structure Mapping, Complementation, and Physiology of ESCHERICHIA COLI hfl Mutants

Six of seven hfl mutations of Escherichia coli K12, characterized by high frequencies of lysogenization by phage lambda and λcIII mutants, are shown to be tightly linked to, but not within, the purA locus. All six hfl mutations are recessive to wild type in hfl⁺/hfl merodiploids and all lie in a single complementation group, located just counterclockwise from the purA locus. All six mutations confer a slightly increased resistance to penicillin and rifamycin and a slightly increased sensitivity to sodium dodecyl sulfate. Some cases of intragenic complementation and intragenic recombination were observed. It is argued that the hfl⁺ gene determines the synthesis of a protein which antagonizes lysogenization by phage lambda. It is further argued that the function of the λcIII gene product is to negate the antagonistic effect of this hfl⁺ protein.     

The use of selection in recovery of transgenic targets for mutation analysis

Transgenic animal mutagenesis assays using lambda shuttle vectors have recently been described for isolation and characterization of spontaneous and chemical induced DNA mutations. Extensive information on lambda and E. coli genetics provides a wealth of techniques to allow selection of mutant target genes. Here we describe the modification of an E. coli host which permits two methods for the direct selection of mutant genes. These methods reduce the number of plates needed to be screened for a comparable amount of frequency data by 20–100-fold and thus provide a significant savings of the materials and time required for the screening of mutations. In addition, mutants selected by these approaches described here may alter or broaden the spectrum of mutations that are recoverable. Ultimately, a combination of selective and nonselective techniques may prove valuable for the analysis of mutations produced in vivo in transgenic animals.     

Morphogenesis of bacteriophage lambda deletion mutants. I. Abnormal head-related structures produced in normal Escherichia coli.

Late in the morphogenesis of bacteriophage lambda, DNA condenses into the nascent head and is cut from a concatemeric replicative intermediate by a nucleolytic function, Ter, acting at specific sites, called cos. As a result of this process, heads of lambda deletion mutants contain less DNA than those of the wild-type phage. It has been reported that phage with very large deletions (22% of the genome or more) grow poorly but that normal growth can be restored by the non-specific addition of DNA to the genome. This finding implies that DNA content may exert a physical effect on some stage of head assembly.We have investigated the effects of two long deletions, b221 and tdel33, on head assembly. Bacteria infected with the mutants were lysed with non-ionic detergent under conditions favoring stabilization of labile structures containing condensed DNA. It has proved possible to isolate two aberrant head-related structures produced by the deletion mutants. One of these (“overfilled heads”) contains DNA which is longer than the deletion mutant genome and is about the same size as that found in wild-type heads. These structures appear to be unable to attach tails. The second type of structure (“incompletely filled heads”) contains a short piece of DNA, 40% of the length of the mutant genome. The incompletely filled heads are found both with and without attached tails. Both of these abnormal structures are initially attached to the replicating DNA but are released by treatment with DNAase. The nature of these abnormal structures indicates that very small genomes affect a late stage of head morphogenesis, after the DNA is complexed with a capsid of normal size. The results presented suggest that underfilling of the capsid interferes with the ability of the Ter function to properly cleave cos.     

Morphogenesis of bacteriophage lambda deletion mutants. II. Escherichia coli mutants which prevent maturation of short genomes.

We have isolated mutants of Escherichia coli which severely reduce the growth of bacteriophage lambda carrying the b221 deletion. Some of the bacterial strains also cause a moderate reduction in the growth of wild-type phage. In the mutant hosts tested, the growth of λb221 is restored by chromosomal alterations producing a non-specific increase in genome length. Thus the defect in growth can be attributed to the physical size of the genome, rather than a genetic effect of the b221 deletion. Our experiments show that the failure to grow results from a block to head morphogenesis and that growth can be restored by mutations in at least two phage head genes. In the accompanying paper we have shown that even in the normal bacterium, the process of packing and cutting the λb221 genome is perturbed as a result of its small size. The block to morphogenesis in the bacterial mutant we have studied most extensively appears to result from an enhancement of the same effect. The experiments described support the hypothesis that there is host participation in the cutting of encapsulated lambda DNA, although it is not yet clear if this involves the direct participation of a host gene product.     

A mutation of the wobble nucleotide of a bacteriophage T4 transfer RNA.

Wild-type bacteriophage T7 is not subject to restriction by the Escherichia coli B and K restriction systems, but T7 mutants that are susceptible to such restriction have been isolated. These mutants are all defective in gene 0.3, the first T7 gene to be expressed after infection. The gene 0.3 protein apparently acts to prevent modification as well as restriction, suggesting that it may interact with a component of the host restriction-modification system that is required for both processes. Mutants in which gene 0.3 is completely deleted are only partially modified by growth on hosts with an active restriction-modification system, presumably because the conditions of T7 infection overload the modifying capacity of the cells. This is in contrast to phages such as lambda that are completely modified during growth. Since gene 0.3 is not essential for growth in non-restricting hosts, it has been possible to isolate deletions which extend to the left of gene 0.3 into the region where E. coli RNA polymerase initiates the synthesis of T7 early RNA. Two of the three strong initiators from which E. coli RNA polymerase transcribes the early region can be deleted.In the course of searching for T7 mutants that are unable to overcome restriction, it was discovered that mutants defective in gene 2 are able to plate on E. coli C with essentially normal efficiency, and most gene 7 mutants are able to plate on both C and K strains. It has not been determined why genes 2 and 7 seem to be needed for growth in some E. coli strains but not in others.     

Mutations in the right operator of bacteriophage lambda: evidence for operator-promoter interpenetration

A set of virulent mutants of bacteriophage lambda have been selected from λv2 v3. The sites of mutation form two microclusters, both close to v3. Some of the mutants, selected for their ability to grow on a λ-lysogen, can also grow on a λdv carrier strain. They are called “supervirulent” and a mutation conferring super-virulence is called vs. The sites of mutation to vs lie between the presumed promoter mutants (x3, x7) and x13, implying that the operator and promoter interpenetrate each other. The relative affinities of λ repressor for binding, in vitro, to λv⁺, λv3, λvs326, and λv3 vs327 DNA were 1, $\text{1}\text{4}$, $\text{1}\text{20}$, and $\text{1}\text{4000}$, respectively. We suggest that two separate mutations in the right operator are needed to confer virulence because promoter sites lie within the operator.     

Mutations of coliphage lambda affecting the expression of replicative functions O and P

Summary A selection technique, using the thermoinducible prophage CI857Nsus7 Nsus53, has lead to the characterization of a new class of prophage mutations (called r), which prevent host killing upon thermal induction.N-defective r mutants efficiently complement i⁴³⁴ or O and P mutants, but not the corresponding mutants of i²¹. Complementation data suggest that the i²¹ hybrid fails to provide the positive regulatory mechanism dependent on the N-gene product, since it cannot activate the Q gene of a N-defective mutant. Thus, it seems possible that r mutants cannot express genes O and P unless the N-gene product is present in the cell. This interpretation is supported by the fact that r mutants are not defective and form plaques when their N-gene is functional. r mutation confer a clear phenotype, and map in the y-CII region. Results of a density gradient analysis suggest that they result from small insertions of DNA. Induced N-defective r prophages appear to be only poorly transcribed on strand H.Complementation tests performed in a strain lysogenic for indicate that the C17 mutation can suppress a r mutation in a cis position, even in the absence of the N-gene product.These results suggest that the expression of genes O and P, in addition to gene Q, is under the positive regulation of the N-gene product.     

Lambda phage mutants insensitive to temperature-sensitive repressor

Summary Weak-virulent mutants of temperate coli-phage were isolated which can grow on the CIts lysogen producing a temperature-sensitive repressor but which cannot grow on the wild type lysogen producing a normal repressor.Genetic analysis on the mutants shows that their weak-virulence is attributable to two mutations, one (virL) in the region between sus N₂₁₃ and c ₄₇ and the other (virR) in the region between c ₁ and sus O₈. Both mutations are located within the region of non-homology between and imm ⁴³⁴ phages.True virulent mutants which can grow on the wild type lysogen can be obtained easily from the weak-virulent mutant by an additional mutation, virC in a region very close to virR. The virulent mutants obtained are similar to the classical vir mutant (Jacob and Wollman, 1954). The virL and virR mutations are probably operator mutations which render the genome insensitive to the repressor.This work was reported at the XII th International Congress of Genetics, held in Tokyo, on August 23, 1968.