共查询到20条相似文献,搜索用时 15 毫秒
1.
Christoph Engelhardt Valérie Malfroy Camine David Ingram Philippe Müllhaupt Alain Farron Dominique Pioletti 《Computer methods in biomechanics and biomedical engineering》2013,16(12):1272-1279
The estimation of muscle forces in musculoskeletal shoulder models is still controversial. Two different methods are widely used to solve the indeterminacy of the system: electromyography (EMG)-based methods and stress-based methods. The goal of this work was to evaluate the influence of these two methods on the prediction of muscle forces, glenohumeral load and joint stability after total shoulder arthroplasty. An EMG-based and a stress-based method were implemented into the same musculoskeletal shoulder model. The model replicated the glenohumeral joint after total shoulder arthroplasty. It contained the scapula, the humerus, the joint prosthesis, the rotator cuff muscles supraspinatus, subscapularis and infraspinatus and the middle, anterior and posterior deltoid muscles. A movement of abduction was simulated in the plane of the scapula. The EMG-based method replicated muscular activity of experimentally measured EMG. The stress-based method minimised a cost function based on muscle stresses. We compared muscle forces, joint reaction force, articular contact pressure and translation of the humeral head. The stress-based method predicted a lower force of the rotator cuff muscles. This was partly counter-balanced by a higher force of the middle part of the deltoid muscle. As a consequence, the stress-based method predicted a lower joint load (16% reduced) and a higher superior–inferior translation of the humeral head (increased by 1.2 mm). The EMG-based method has the advantage of replicating the observed cocontraction of stabilising muscles of the rotator cuff. This method is, however, limited to available EMG measurements. The stress-based method has thus an advantage of flexibility, but may overestimate glenohumeral subluxation. 相似文献
2.
Gang Tang Xi-an Zhang Lin-lin Zhang Hong-sheng Wang Wen-zhong Nie 《Computer methods in biomechanics and biomedical engineering》2013,16(7):615-620
An effective way to avoid invading or injuring the subjects is to use the musculoskeletal model when studying the dynamic properties of muscles in vivo. So, we put forward a joint coordinate system-based method, which mainly focuses on the coordinate's transformation of corresponding muscle attachment points, respectively, in the model and the subject in order to reproduce the movement of the subject on the model. As muscle moment arm is usually used to evaluate the dynamic properties of muscles, the moment arms in elbow flexion for each of the major muscles crossing the elbow in 50 healthy subjects (25 males and 25 females), ranging in height from 1.50 to 1.80 m (mean 1.6542 m) are calculated and compared with the measured data obtained from anatomical studies reported in the literature. The trends of the value basically coincide with each other. So, this novel method can be valid. 相似文献
3.
Use of a model of photosynthesis and leaf microenvironment to predict optimal stomatal conductance and leaf nitrogen partitioning 总被引:1,自引:3,他引:1
A. D. FRIEND 《Plant, cell & environment》1991,14(9):895-905
Abstract. A model of photosynthesis (PGEN) is presented. The model assumes that optimal use is made of the leaf nitrogen available for partitioning between the carboxylase and thylakoid components. This results in predictions of Rubisco and chlorophyll concentrations very similar to those measured elsewhere. A function is incorporated which represents the detrimental effects of negative leaf water potentials on the Calvin cycle, producing a quantitative and mechanistic trade-off between CO2 entering, and H2 O leaving, the leaf. Thus, an optimal stomatal conductance and associated internal partial pressure of CO2 exists for any given set of environmental conditions. The model calculates this optimal state for the leaf, which is its output. The model was subjected to changes in the following parameters: soil water potential, irradiance, ambient CO2 partial pressure, leaf temperature, leaf-to-air vapour pressure deficit, wind speed, atmospheric pressure, leaf nitrogen content, root dry weight and leaf width. These perturbations resulted in changes in predicted optimal conductance which were very similar to what has been observed. In general, as the capacity of the leaf to fix CO2 increased, so did the predicted optimal conductance, with the internal partial pressure of CO2 being maintained close to 22Pa. 相似文献
4.
The native state of a protein molecule in aqueous solutions represents one of the lowest states of Gibbs energy [Anfinsen, C.B. (1973) Science 181, 223-230]. Much progress has been made about the rules of protein folding [King, J. (1989) Chem. Eng. News 67, 32-54] and the dominant forces in protein folding [Dill, K.A. (1990) Biochemistry 29, 7133-7155]. However, the quantitative contributions of different Gibbs energy terms to protein stability remains a controversial issue [Moult, J., & Unger, R. (1991) Biochemistry 30, 3816-3824]. A molecular thermodynamic model has been proposed for the Gibbs energy of folding a residue in aqueous homopolypeptides from a random-coiled state to either the alpha-helix state or the beta-sheet state [Chen, C.-C., Zhu, Y., King, J.A., & Evans, L.B. (1992) Biopolymers 32, 1375-1392]. In this work, we present a generalization of the molecular thermodynamic model for the Gibbs energy of folding natural and synthetic heteropolypeptides from random-coiled conformations into alpha-helical conformations. The generalized model incorporates the intrinsic folding potential due to residue-solvent interactions, the cooperative folding effect due to residue-residue interactions, and the location and length of alpha-helices. The utility of the model was demonstrated by examining the stability of alpha-helical conformations of a number of natural polypeptides including C-peptide (residues 1-13) and S-peptide (residues 1-20) of RNase A (bovine pancreatic ribonuclease A), the P alpha fragment in BPTI (bovine pancreatic trypsin inhibitor), and synthetic polypeptides (the copolymers of different amino acid residues) including alanine-based peptides (16 or 17 residues long) in water. The computed Gibbs energies correspond well with the experimental data on helicity. The results also accounted for the effects of amino acid substitution and temperature on the stability of alpha-helical conformations of the test polypeptides. 相似文献
5.
Vitrification has been used to successfully cryopreserve cells and tissues for over 60 years. Glass transition temperature (T g) of the vitrification is a critical parameter, which has been investigated experimentally. In this study, an isothermal–isobaric molecular simulation (NPT-MD) is proposed to investigate the glass transition and T g of such vitrification solution. The cohesive energy density, solubility parameter (δ) and bulk modulus of the solution during the process of the glass transition are investigated as well. The results indicate that these properties as functions of temperature can give a definite inflexion; thus, these properties can be used to predict T g more accurately than the heat capacity (C p ), density (ρ), volume (V) and radial distribution function (rdf). At the same time, the predicted values of T g agree well with the experimental results. Therefore, molecular dynamics simulation is a potential method for investigating the glass transition and T g of the vitrification solutions. 相似文献
6.
The adaptation of cancellous bone to mechanical forces is well recognized. Theoretical models for predicting cancellous bone
architecture have been developed and have mainly focused on the distribution of trabecular mass or the apparent density. The
purpose of this study was to develop a theoretical model which can simultaneously predict the distribution of trabecular orthotropy/orientation,
as represented by the fabric tensor, along with apparent density. Two sets of equations were derived under the assumption
that cancellous bone is a biological self-optimizing material which tends to minimize strain energy. The first set of equations
provide the relationship between the fabric tensor and stress tensor, and have been verified to be consistent with Wolff’s
law of trabecular architecture, that is, the principal directions of the fabric tensor coincide with the principal stress
trajectories. The second set of equations yield the apparent density from the stress tensor, which was shown to be identical
to those obtained based on local optimization with strain energy density of true bone tissue as the objective function. These
two sets of equations, together with elasticity field equations, provide a complete mathematical formulation for the adaptation
of cancellous bone.
Received: 25 February 1997/Revised version: 23 September 1997 相似文献
7.
In this paper we present a numerical method for the bidomain model, which describes the electrical activity in the heart. The model consists of two partial differential equations (PDEs), which are coupled to systems of ordinary differential equations (ODEs) describing electrochemical reactions in the cardiac cells. Many applications require coupling these equations to a third PDE, describing the electrical fields in the torso surrounding the heart. The resulting system is challenging to solve numerically, because of its complexity and very strict resolution requirements in time and space. We propose a method based on operator splitting and a fully coupled discretization of the three PDEs. Numerical experiments show that for simple simulation cases and fine discretizations, the algorithm is second-order accurate in space and time. 相似文献
8.
Sella G 《Theoretical population biology》2009,75(1):30-34
Because nearly neutral substitutions are thought to contribute substantially to molecular evolution, and much of our insight about the workings of nearly neutral evolution relies on theory, solvable models of this process are of particular interest. Here, I present an analytical method for solving models of nearly neutral evolution at steady state. The steady state solution applies to any constant fitness landscape under a dynamic of successive fixations, each of which occurs on the background of the population's most recent common ancestor. Because this dynamic neglects the effects of polymorphism in the population beyond the mutant allele under consideration, the steady state solution provides a decent approximation of evolutionary dynamics when the population mutation rate is low (Nu<1). To demonstrate the method, I apply it to two examples: Fisher's geometric model (FGM), and a simple model of molecular evolution. Since recent papers have studied the steady state behavior of FGM under this dynamic, I analyze its behavior in detail and compare the results with previous work. 相似文献
9.
A model to predict transformations and losses of nitrogen in UK pastures grazed by beef cattle 总被引:7,自引:0,他引:7
The model simulates the cycling of N in grassland systems grazed by beef cattle and predicts the annual amount of N in liveweight gain, and the amounts lost through ammonia volatilization, denitrification and leaching, on the basis of fertilizer application and soil and site characteristics. It aims to provide a better understanding of the way in which these various factors interact in their influence on N transformations. The model has been programmed to run on IBM-compatible personal computers and responds rapidly to changes in input parameters. The model has been constructed from the average annual amounts of N passing through various components of the N cycle in ten field systems grazed by beef cattle. The amounts were either measured directly or were calculated from empirical sub-models, assuming a balance between inputs to, and outputs from the soil inorganic N pool. The model is given wide applicability through the inclusion of a mineralization sub-model which is sensitive to soil texture, sward age, previous cropping history, and climatic zone. Another important sub-model determines the partitioning of soil inorganic N to either plant uptake or the processes of loss: the proportion partitioned to plant uptake decreases as the total amount of soil inorganic N increases. Outputs from the model indicate that fertilizer N has a strong influence on ammonia volatilization, denitrification and leaching at a given site but that, over a range of sites with a given rate of fertilizer N, total loss and the proportions lost by the three processes are greatly influenced by the amount of N mineralized by the soil. The model indicates how fertilizer N should be matched with mineralization to limit gaseous and leaching losses and to achieve optimum efficiency of N use in grazing systems. 相似文献
10.
11.
Use of a model and toxicity data to predict the risks to some wild plant species from drift of four herbicides 总被引:2,自引:0,他引:2
The dose responses of 14 wild plant species (two grasses, two legumes, one annual and nine perennial dicotyledons), not usually recognised as weeds, to four herbicides (asulam, glyphosate, MCPA and mecoprop) were measured in glasshouse experiments. Glyphosate was the most toxic; seven of the species tested had EDu, values (measured as shoot dry weight) of < 1.0 μg/plant, compared with only one species for MCPA and mecoprop. Asulam was the least toxic. Results were used to indicate the risk to each species from drift damage. A model of spray drift, based on that developed by Thompson & Ley (1982) for evaporating droplets, was rescaled to allow for field application rates and used to predict the distances travelled by given doses of herbicide. This gave acceptable agreement with reports for drift damage in the field, and predicted that only glyphosate sprayed at the highest recommended concentration might be unsafe to some of the species examined. The two herbicides sometimes used as volatile formulations (MCPA and mecoprop) did not cause damage at the small doses likely to result from exposure to vapour in the field. 相似文献
12.
The planar spring-mass model is a simple mathematical model of bouncing gaits, such as running, trotting and hopping. Although this model has been widely used in the study of locomotion, its accuracy in predicting locomotor mechanics has not been systematically quantified. We determined the percent error of the model in predicting 10 locomotor parameters in running humans by comparing the model predictions to experimental data from humans running in normal gravity and simulated reduced gravity. We tested the hypotheses that the model would overestimate horizontal impulse and the change in mechanical energy of the centre of mass (COM) during stance. The model provided good predictions of stance time, vertical impulse, contact length, duty factor, relative stride length and relative peak force. All predictions of these parameters were within 20% of measured values and at least 90% of predictions of each parameter were within 10% of measured values (median absolute errors: <7%). This suggests that the model incorporates all features of running humans that have a significant influence upon these six parameters. As simulated gravity level decreased, the magnitude of the errors in predicting each of these parameters either decreased or stayed constant, indicating that this is a good model of running in simulated reduced gravity. As hypothesised, horizontal impulse and change in mechanical energy of the COM during stance were overestimated (median absolute errors: 43.6% and 26.2%, respectively). Aerial time and peak vertical COM displacement during stance were also systematically overestimated (median absolute errors: 17.7% and 22.9%, respectively). Care should be taken to ensure that the model is used only to investigate parameters which it can predict accurately. It would be useful to extend this analysis to other species and gaits. 相似文献
13.
A. Kourelis I. Zinonos M. Kakagianni A. Christidou N. Christoglou E. Yiannaki T. Testa C. Kotzamanidis E. Litopoulou-Tzanetaki N. Tzanetakis M. Yiangou 《Journal of applied microbiology》2010,108(1):274-284
Aims: To validate the use of the air pouch system to predict and examine early immune responses induced by the presumptive probiotics Lactobacillus paracasei subsp. paracasei B112, DC205, DC215 and DC412 strains in the gut mucosa.
Methods and Results: Only the DC412 strain interacted strongly with the cells forming the air pouch lining tissue and induced early innate immune responses such as polymorphonuclear (PMN) cell recruitment, phagocytosis and tumour necrosis factor alpha (TNF-α) production that equal the respective responses induced by the probiotic Lactobacillus acidophilus NCFB 1748. The strains exhibiting strong immunoregulatory activity in the air pouch also interacted strongly with the gut-associated lymphoid tissue (GALT). The strain DC412 exerts its effect on the intestine through stimulation of Toll-like receptor (TLR)2/TLR4-mediated signalling events leading to secretion of a certain profile of cytokines in which gamma interferon (IFN-γ), TNF-α, interleukin (IL)-6 and IL-10 are included. The probiotic Lact. acidophilus NCFB 1748 induces the same cytokine profile in addition to IL-12B, and this response is potentially mediated by the synergy of TLR2 and TLR9.
Conclusion: The strain DC412 possesses the in vitro and in vivo characteristics of a probiotic micro-organism.
Significance and Impact of the Study: The dorsal mouse or rat air pouch may be used as an alternative and rapid method for the initial discrimination and selection of potential probiotic Lactobacillus strains. 相似文献
Methods and Results: Only the DC412 strain interacted strongly with the cells forming the air pouch lining tissue and induced early innate immune responses such as polymorphonuclear (PMN) cell recruitment, phagocytosis and tumour necrosis factor alpha (TNF-α) production that equal the respective responses induced by the probiotic Lactobacillus acidophilus NCFB 1748. The strains exhibiting strong immunoregulatory activity in the air pouch also interacted strongly with the gut-associated lymphoid tissue (GALT). The strain DC412 exerts its effect on the intestine through stimulation of Toll-like receptor (TLR)2/TLR4-mediated signalling events leading to secretion of a certain profile of cytokines in which gamma interferon (IFN-γ), TNF-α, interleukin (IL)-6 and IL-10 are included. The probiotic Lact. acidophilus NCFB 1748 induces the same cytokine profile in addition to IL-12B, and this response is potentially mediated by the synergy of TLR2 and TLR9.
Conclusion: The strain DC412 possesses the in vitro and in vivo characteristics of a probiotic micro-organism.
Significance and Impact of the Study: The dorsal mouse or rat air pouch may be used as an alternative and rapid method for the initial discrimination and selection of potential probiotic Lactobacillus strains. 相似文献
14.
A method is proposed to generate muscle activation patterns for goal-directed movements of the human masticatory system. This system is special because apart from a larger amount of muscles than degrees of freedom its joints do not restrict its movements a priori. Therefore, each muscle is able to influence all six degrees of freedom which makes the system kinematically and mechanically indeterminate. Furthermore, its working space is principally determined by the dynamical properties of its muscles and not by passive constraints.The presented method determines the contribution of each degree of freedom to a movement of a reference point on the mandible. It avails of straightforward mathematical techniques like Linear Programming. It does not require a separate trajectory planning step. It was applied in a six degrees of freedom dynamical mathematical model of the human masticatory system. This model which was based upon rigid-body dynamics incorporating skull morphology and muscle architecture including dynamical properties. Movements were exclusively defined by a goal position of the mandibular reference point.The method proved to be robust in generating muscle activation patterns for both feasible and infeasible movement tasks. Generally, they were accomplished faster than habitually observed. If the task was infeasible the movement stopped at the outer boundary of the working space at the side of the unreachable goal. The method, therefore, enables to explore the working space of the mandible and the factors that are relevant for its boundaries. 相似文献
15.
J. P. M. Witte F. Klijn F. A. M. Claessen C. L. G. Groen R. van der Meijden 《Wetlands Ecology and Management》1992,2(1-2):69-83
Current water management policy in The Netherlands aims to serve a multitude of land use functions, such as agriculture, industry, shipping, and drinking water supply. To attune this policy to the diversity of functions, computer models are used to predict the consequences of various policy options as a part of PAWN: the government's Policy Analysis of Water management for The Netherlands.Nature conservation and development is a relatively new aspect of water management policy. This article describes the PAWN model DEMNAT, which is designed to predict the impact of hydrologic changes on terrestrial ecosystems in The Netherlands. The main components of the model are explained and the predicted effects of an assumed climatic change are discussed. 相似文献
16.
A method of determining rooting depth from a terrestrial biosphere model and its impacts on the global water and carbon cycle 总被引:1,自引:0,他引:1
We outline a method of inferring rooting depth from a Terrestrial Biosphere Model by maximizing the benefit of the vegetation within the model. This corresponds to the evolutionary principle that vegetation has adapted to make best use of its local environment. We demonstrate this method with a simple coupled biosphere/soil hydrology model and find that deep rooted vegetation is predicted in most parts of the tropics. Even with a simple model like the one we use, it is possible to reproduce biome averages of observations fairly well. By using the optimized rooting depths global Annual Net Primary Production (and transpiration) increases substantially compared to a standard rooting depth of one meter, especially in tropical regions that have a dry season. The decreased river discharge due to the enhanced evaporation complies better with observations. We also found that the optimization process is primarily driven by the water deficit/surplus during the dry/wet season for humid and arid regions, respectively. Climate variability further enhances rooting depth estimates. In a sensitivity analysis where we simulate changes in the water use efficiency of the vegetation we find that vegetation with an optimized rooting depth is less vulnerable to variations in the forcing. We see the main application of this method in the modelling communities of land surface schemes of General Circulation Models and of global Terrestrial Biosphere Models. We conclude that in these models, the increased soil water storage is likely to have a significant impact on the simulated climate and the carbon budget, respectively. Also, effects of land use change like tropical deforestation are likely to be larger than previously thought. 相似文献
17.
Helge Aufderheide Lars Rudolf Thilo Gross Kevin D. Lafferty 《Proceedings. Biological sciences / The Royal Society》2013,280(1773)
Recent attempts to predict the response of large food webs to perturbations have revealed that in larger systems increasingly precise information on the elements of the system is required. Thus, the effort needed for good predictions grows quickly with the system''s complexity. Here, we show that not all elements need to be measured equally well, suggesting that a more efficient allocation of effort is possible. We develop an iterative technique for determining an efficient measurement strategy. In model food webs, we find that it is most important to precisely measure the mortality and predation rates of long-lived, generalist, top predators. Prioritizing the study of such species will make it easier to understand the response of complex food webs to perturbations. 相似文献
18.
We describe a new procedure whereby the magnitude of the dielectric dispersion of a solution of globular protein molecules can be calculated. The protein molecule is considered to have spherical symmetry and the charged residues are thought to be situated in a medium whose dielectric constant increases continuously as a function of the distance from the centre of mass. The dipole moment of the protein in the solution is made up of two parts: the intrinsic dipole moment due to the charge distribution of the protein and the dipole moment due to polarization of the medium and the ionic cloud. When the model is applied to solutions of cytochrome c it is found that polarization of the medium results in a decrease in the dielectric dispersion amplitude. The mean square dipole moment calculated with the help of this method indicates that the fluctuation of the configurations cannot be responsible for the large dispersion in the megahertz region. 相似文献
19.
Direct determination of the microwave absorption characteristics of biological molecules in solution by an optical heterodyne technique is described. A visibly transparent sample is irradiated in a spatially nonuniform manner with pulsed microwaves, and the spatial variation in temperature increase measured by detecting the phase chirp impressed on a single-frequency He-Ne laser beam passing through the heated region. Results for several liquids and solutions such as water, methanol, various saline solutions, and solutions of DNA and DNA sodium salt in water are described. Where direct comparison is possible the results agree very well with published values. A significant increase in the absorption of DNA solutions compared with pure water has been observed that is consistent with microwave absorption by the longitudinal mode of the double helix. 相似文献
20.
Horemans T Deschacht M Clais S Van Camp J de Rijk P Holvoet J Van Assche T Maes L Cos P 《Helicobacter》2011,16(2):113-118
Background: Despite the high sensitivity and specificity of PCR, detection of Helicobacter pylori DNA in feces is still challenging. Fecal samples contain inhibitory molecules that can prevent amplification of the target DNA. Even by using specific DNA extraction kits for stools, monitoring of infection by analyzing stool samples remains problematic and endorses the need for improved diagnostic methods. Materials and Methods: The newly proposed method uses selective hybridization of target DNA with biotin‐labeled probes, followed by DNA isolation with streptavidin‐coated magnetic beads. After three washing steps, the purified DNA can be amplified immediately using conventional or quantitative PCR. In order to test this technique on biological samples, Mongolian gerbils were infected with H. pylori ATCC 43504 and fecal samples were analyzed on days 1, 4, and 10 post infection. Results: A detection limit of one bacterial cell per 100 mg stool sample was established, but only after removal of the magnetic beads from the target DNA by heating. This resulted in a 10‐fold increase of sensitivity compared to a commercially available stool DNA extraction kit. Analysis of fecal samples from infected gerbils demonstrated the presence of H. pylori DNA on each time point, while the uninfected animal remained negative. Conclusions: The proposed technique allows detection of very low quantities of H. pylori DNA in biological samples. In laboratory animal models, detailed monitoring of infection and complete clearance of infection can be demonstrated thanks to the low detection limit. 相似文献