The impacts of habitat disturbance on adult and larval dragonflies (Odonata) in rainforest streams in Sabah,Malaysian Borneo

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Logged peat swamp forest supports greater macrofungal biodiversity than large‐scale oil palm plantations and smallholdings

Intensive land expansion of commercial oil palm agricultural lands results in reducing the size of peat swamp forests, particularly in Southeast Asia. The effect of this land conversion on macrofungal biodiversity is, however, understudied. We quantified macrofungal biodiversity by identifying mushroom sporocarps throughout four different habitats; logged peat swamp forest, large‐scale oil palm plantation, monoculture, and polyculture smallholdings. We recorded a total of 757 clusters of macrofungi belonging to 127 morphospecies and found that substrates for growing macrofungi were abundant in peat swamp forest; hence, morphospecies richness and macrofungal clusters were significantly greater in logged peat swamp forest than converted oil palm agriculture lands. Environmental factors that influence macrofungi in logged peat swamp forests such as air temperature, humidity, wind speed, soil pH, and soil moisture were different from those in oil palm plantations and smallholdings. We conclude that peat swamp forests are irreplaceable with respect to macrofungal biodiversity. They host much greater macrofungal biodiversity than any of the oil palm agricultural lands. It is imperative that further expansion of oil palm plantation into remaining peat swamp forests should be prohibited in palm oil producing countries. These results imply that macrofungal distribution reflects changes in microclimate between habitats and reduced macrofungal biodiversity may adversely affect decomposition in human‐modified landscapes.     

Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

Tropical forests are being rapidly altered by logging and cleared for agriculture. Understanding the effects of these land use changes on soil bacteria, which constitute a large proportion of total biodiversity and perform important ecosystem functions, is a major conservation frontier. Here we studied the effects of logging history and forest conversion to oil palm plantations in Sabah, Borneo, on the soil bacterial community. We used paired-end Illumina sequencing of the 16S rRNA gene, V3 region, to compare the bacterial communities in primary, once-logged, and twice-logged forest and land converted to oil palm plantations. Bacteria were grouped into operational taxonomic units (OTUs) at the 97% similarity level, and OTU richness and local-scale α-diversity showed no difference between the various forest types and oil palm plantations. Focusing on the turnover of bacteria across space, true β-diversity was higher in oil palm plantation soil than in forest soil, whereas community dissimilarity-based metrics of β-diversity were only marginally different between habitats, suggesting that at large scales, oil palm plantation soil could have higher overall γ-diversity than forest soil, driven by a slightly more heterogeneous community across space. Clearance of primary and logged forest for oil palm plantations did, however, significantly impact the composition of soil bacterial communities, reflecting in part the loss of some forest bacteria, whereas primary and logged forests did not differ in composition. Overall, our results suggest that the soil bacteria of tropical forest are to some extent resilient or resistant to logging but that the impacts of forest conversion to oil palm plantations are more severe.     

Poor Prospects for Avian Biodiversity in Amazonian Oil Palm

Expansion of oil palm plantations across the humid tropics has precipitated massive loss of tropical forest habitats and their associated speciose biotas. Oil palm plantation monocultures have been identified as an emerging threat to Amazonian biodiversity, but there are no quantitative studies exploring the impact of these plantations on the biome’s biota. Understanding these impacts is extremely important given the rapid projected expansion of oil palm cultivation in the basin. Here we investigate the biodiversity value of oil palm plantations in comparison with other dominant regional land-uses in Eastern Amazonia. We carried out bird surveys in oil palm plantations of varying ages, primary and secondary forests, and cattle pastures. We found that oil palm plantations retained impoverished avian communities with a similar species composition to pastures and agrarian land-uses and did not offer habitat for most forest-associated species, including restricted range species and species of conservation concern. On the other hand, the forests that the oil palm companies are legally obliged to protect hosted a relatively species-rich community including several globally-threatened bird species. We consider oil palm to be no less detrimental to regional biodiversity than other agricultural land-uses and that political pressure exerted by large landowners to allow oil palm to count as a substitute for native forest vegetation in private landholdings with forest restoration deficits would have dire consequences for regional biodiversity.     

Do riparian reserves support dung beetle biodiversity and ecosystem services in oil palm-dominated tropical landscapes?

Agricultural expansion and intensification are major threats to global biodiversity, ecological functions, and ecosystem services. The rapid expansion of oil palm in forested tropical landscapes is of particular concern given their high biodiversity. Identifying management approaches that maintain native species and associated ecological processes within oil palm plantations is therefore a priority. Riparian reserves are strips of forest retained alongside rivers in cultivated areas, primarily for their positive hydrological impact. However, they can also support a range of forest‐dependent species or ecosystem services. We surveyed communities of dung beetles and measured dung removal activity in an oil palm‐dominated landscape in Sabah, Malaysian Borneo. The species richness, diversity, and functional group richness of dung beetles in riparian reserves were significantly higher than in oil palm, but lower than in adjacent logged forests. The community composition of the riparian reserves was more similar to logged forest than oil palm. Despite the pronounced differences in biodiversity, we did not find significant differences in dung removal rates among land uses. We also found no evidence that riparian reserves enhance dung removal rates within surrounding oil palm. These results contrast previous studies showing positive relationships between dung beetle species richness and dung removal in tropical forests. We found weak but significant positive relationships between riparian reserve width and dung beetle diversity, and between reserve vegetation complexity and dung beetle abundance, suggesting that these features may increase the conservation value of riparian reserves. Synthesis and applications: The similarity between riparian reserves and logged forest demonstrates that retaining riparian reserves increases biodiversity within oil palm landscapes. However, the lack of correlation between dung beetle community characteristics and dung removal highlights the need for further research into spatial variation in biodiversity–ecosystem function relationships and how the results of such studies are affected by methodological choices.     

Roles of fragmented and logged forests for bird communities in industrial Acacia mangium plantations in Indonesia

Industrial timber plantations severely impact biodiversity in Southeast Asia. Forest fragments survive within plantations, but their conservation value in highly deforested landscapes in Southeast Asia is poorly understood. In this study, we compared bird assemblages in acacia plantations and fragmented forests in South Sumatra to evaluate each habitat’s potential conservation value. To clarify the impact of habitat change, we also analyzed the response of feeding guild composition. Five habitat types were studied: large logged forest (LLF), burnt logged forest (BLF), remnant logged forest (RLF), 4-year-old acacia plantation (AP4), and 1-year-old acacia plantation (AP1). Estimated species richness (Chao 2) was highest in LLF then AP4 and BLF, while AP1 and RLF had lower estimated species richness. Community composition was roughly divided into two groups by non-metric multidimensional scaling ordination: acacia plantation and logged forest. Sallying substrate-gleaning insectivores, such as drongos, broadbills, and some flycatchers, were restricted to LLF, whereas acacia plantation hosted many terrestrial frugivores, such as doves. Although fragmented forests in our study site lacked several common tropical forest species, these fragments provide an important habitat for some sallying and terrestrial insectivores. A network of small riparian remnant forests could be a complementary habitat for some species, while the conservation value of burnt forest might be low. In conclusion, the highly fragmented forests in plantations are suboptimal habitats for birds but are still very important, because large primary forest blocks have been nearly lost in the surrounding landscape.     

Impacts of logging and conversion of rainforest to oil palm on the functional diversity of birds in Sundaland

Commercial selective logging and the conversion of primary and degraded forests to agriculture are the biggest threats to tropical biodiversity. Our understanding of the impacts of these disturbances and the resulting local extinctions on the functional roles performed by the remaining species is limited. We address this issue by examining functional diversity (FD), which quantifies a range of traits that affect a species' ecological role in a community as a single continuous metric. We calculated FD for birds across a gradient of disturbance from primary forest through intensively logged forest to oil palm plantations on previously forested land in Borneo, Southeast Asia, a hotspot of imperilled biodiversity. Logged rainforest retained similar levels of FD to unlogged rainforest, even after two logging rotations, but the conversion of logged forest to oil palm resulted in dramatic reductions in FD. The few remaining species in oil palm filled a disproportionately wide range of functional roles but showed very little clustering in terms of functional traits, suggesting that any further extinctions from oil palm would reduce FD even further. Determining the extent to which the changes we recorded were due to under‐utilization of resources within oil palm or a reduction in the resources present is an important next step. Nonetheless our study improves our understanding of the stability and resilience of functional diversity in these ecosystems and of the implications of land‐use changes for ecosystem functioning.     

Effects of oil palm plantations on habitat structure and fish assemblages in Amazon streams

The aim of this research is to assess the effects of oil palm plantations on stream habitat and their fish assemblage diversity. We hypothesize that streams which drain through oil palm plantations tend to be less heterogeneous, limiting the occurrence of many species, than streams that drain through forest fragments, which support higher fish diversity. A total of 17 streams were sampled; eight in forest fragments and nine in oil palm plantations. Environmental and biological variables were sampled along 150 m stretch in each stream. Of the 242 environmental variables measured, ten were considered important to assess the condition of structural habitat, and out of these variables, four were considered relevant in the distinction between streams in oil palm plantations and forest fragments. A total of 7245 fishes were collected, belonging to 63 species. Unlike our original hypothesis, the species richness did not differ between forest fragment and oil palm plantations streams, showing that it is not a good divert measure in streams disturbance assessment. However, fish assemblages differed in species composition, and 56 species were recorded in oil palm plantation streams, while 44 species were recorded in forest fragments streams. Some species were identified as indicators of either altered (Aequidens tetramerus and Apistogramma agassizii) or undisturbed areas (Helogenes marmoratus). Overall, oil palm plantations were proven to change stream habitat structure and fish species distribution, corroborating other studies that have evidenced changes in patterns of biological community structure due to impacts by different land uses.     

Land-use effects on local biodiversity in tropical forests vary between continents

Land-use change is one of the greatest threats to biodiversity, especially in the tropics where secondary and plantation forests are expanding while primary forest is declining. Understanding how well these disturbed habitats maintain biodiversity is therefore important—specifically how the maturity of secondary forest and the management intensity of plantation forest affect levels of biodiversity. Previous studies have shown that the biotas of different continents respond differently to land use. Any continental differences in the response could be due to differences in land-use intensity and maturity of secondary vegetation or to differences among species in their sensitivity to disturbances. We tested these hypotheses using an extensive dataset collated from published biodiversity comparisons within four tropical regions—Asia, Africa, Central America and South America—and a wide range of animal and plant taxa. We analysed responses to land use of several aspects of biodiversity—species richness, species composition and endemicity—allowing a more detailed comparison than in previous syntheses. Within each continent, assemblages from secondary vegetation of all successional stages retained species richness comparable to those in primary vegetation, but community composition was distinct, especially in younger secondary vegetation. Plantation forests, particularly the most intensively managed, supported a smaller—and very distinct—set of species from sites in primary vegetation. Responses to land use did vary significantly among continents, with the biggest difference in richness between plantation and primary forests in Asia. Responses of individual taxonomic groups did not differ strongly among continents, giving little indication that species were inherently more sensitive in Asia than elsewhere. We show that oil palm plantations support particularly low species richness, indicating that continental differences in the response of biodiversity to land use are perhaps more likely explained by Asia’s high prevalence of oil palm plantations.     

The influence of agricultural system,stand structural complexity and landscape context on foraging birds in oil palm landscapes

Functional diversity, an important element of avian biodiversity, can be examined by quantifying foraging guild composition. Understanding the ecological processes that underpin functional diversity of birds in oil palm Elaeis guineensis landscapes is important because different foraging guilds are likely to be influenced in different ways by land use practices. We surveyed birds at 55 sites within oil palm landscapes and at 20 sites within logged peat swamp forest, recording 208 species belonging to 19 foraging guilds. Oil palm landscapes supported a lower abundance of insectivorous, granivorous and omnivorous birds than did logged peat swamp forest despite the latter being severely degraded due to intensive timber extraction. However, abundances of other groups of foraging birds, such as raptors and wetland taxa, were higher in oil palm landscapes than logged peat swamp forest. Frugivorous species were more abundant in smallholdings than plantation estates, probably because of the presence of native trees. Foraging guild diversity was explained by stand‐level attributes such as stand age, vegetation cover, epiphyte persistence and canopy cover. However, each foraging guild exhibited unique responses to different oil palm management regimes and stand‐level attributes. Only arboreal omnivores and terrestrial frugivores were affected by the proximity of nearby natural forest. This diversity of responses implies that the occurrence of particular avian foraging guilds may not be a suitable ecological indicator of best‐practice palm oil production. Our study also suggests that multiple conservation measures will be needed in oil palm landscapes irrespective of management regimes, including: (1) the maintenance of ground layer vegetation cover; (2) the pruning of oil palm canopy to permit light penetration to the ground layer; (3) re‐vegetation of parts of oil palm landscapes with native trees; and (4) retention of natural and/or secondary forest patches within the boundaries of plantations.     

Fuelling the biodiversity crisis: species loss of ground-dwelling forest ants in oil palm plantations in Sabah,Malaysia (Borneo)

Oil palm plantations today cover large areas of former tropical lowland rain forest in Southeast Asia and are rapidly expanding on the island of Borneo. Study of the community of ground-dwelling ants in different plantations in Sabah, Malaysia, over 2 years using tuna baiting, revealed that the oil palm plantation ground ant community was severely reduced in species richness in comparison to the forest interior, regardless of age, undergrowth cover, or proximity to neighbouring forest. The results indicate that oil palm plantation habitats, now covering more than 15% of Sabah’s land area, can sustain only about 5% of the ground-dwelling ant species of the forest interior. Nine of the 23 ant species baited in the plantations were never recorded inside forest. All numerically dominant ants were non-forest species. The most common species was Anoplolepis gracilipes, an invasive species present at 70% of all bait sites and known to cause ‘ecological meltdowns’ in other situations. The low frequency and species number of forest ground ants indicates that oil palm plantations act as effective dispersal barriers leading to community isolation in rain forest remnants. The replacement of natural forests with oil palm plantations poses a serious threat to the conservation of biodiversity on Borneo if similar results are confirmed in other taxa.     

Oil palm expansion into rain forest greatly reduces ant biodiversity in canopy,epiphytes and leaf-litter

Oil palm cultivation is expanding rapidly into many of the world's most biodiverse tropical regions. One of the most functionally important and ecologically dominant animal groups in these environments is the ants. Here, we quantify the overall impacts of clear-felling lowland dipterocarp rainforest and conversion into oil palm plantation on ant diversity. At study sites in Sabah, Malaysia we collected ants from three microhabitats: 1 – the canopy, 2 – bird's nest ferns (Asplenium nidus complex, a common epiphyte in forest and oil palm), and 3 – leaf litter. We also measured temperature, humidity and light at collection sites to assess their impacts on ant community composition. Total ant species richness decreased from 309 to 110 (?64%) between forest and oil palm plantation. However, this impact was not the same across all microhabitats, with bird's nest ferns maintaining almost the same number of ant species in oil palm compared to forest (forest-oil palm, ferns: 36–35 (3% loss), canopy: 120–58 (52% loss), leaf litter: 216–56 (74% loss)). Relative abundance distributions remained the same for fern-dwelling ants, but became less even for oil palm ants in both the canopy and the leaf litter. These differences may be due in part to the ability of bird's nest ferns to provide a stable microclimate in hot, dry plantations. We also found that non-native ant species were more abundant in oil palm than in forest, and few forest ant species survived in plantations in any of the microhabitats. Only 59 of the 309 forest species persisted in oil palm plantations, corresponding to an 81% loss of forest species resulting from habitat conversion. Although oil palm supports many more ant species than has been previously reported, converting forest into plantation still leads to a dramatic reduction in species richness. The maintenance of forested areas is therefore vital for the conservation of ant biodiversity.     

The impact of tropical forest logging and oil palm agriculture on the soil microbiome

Selective logging and forest conversion to oil palm agriculture are rapidly altering tropical forests. However, functional responses of the soil microbiome to these land‐use changes are poorly understood. Using 16S rRNA gene and shotgun metagenomic sequencing, we compared composition and functional attributes of soil biota between unlogged, once‐logged and twice‐logged rainforest, and areas converted to oil palm plantations in Sabah, Borneo. Although there was no significant effect of logging history, we found a significant difference between the taxonomic and functional composition of both primary and logged forests and oil palm. Oil palm had greater abundances of genes associated with DNA, RNA, protein metabolism and other core metabolic functions, but conversely, lower abundance of genes associated with secondary metabolism and cell–cell interactions, indicating less importance of antagonism or mutualism in the more oligotrophic oil palm environment. Overall, these results show a striking difference in taxonomic composition and functional gene diversity of soil microorganisms between oil palm and forest, but no significant difference between primary forest and forest areas with differing logging history. This reinforces the view that logged forest retains most features and functions of the original soil community. However, networks based on strong correlations between taxonomy and functions showed that network complexity is unexpectedly increased due to both logging and oil palm agriculture, which suggests a pervasive effect of both land‐use changes on the interaction of soil microbes.     

Degraded lands worth protecting: the biological importance of Southeast Asia's repeatedly logged forests

Southeast Asia is a hotspot of imperilled biodiversity, owing to extensive logging and forest conversion to oil palm agriculture. The degraded forests that remain after multiple rounds of intensive logging are often assumed to be of little conservation value; consequently, there has been no concerted effort to prevent them from being converted to oil palm. However, no study has quantified the biodiversity of repeatedly logged forests. We compare the species richness and composition of birds and dung beetles within unlogged (primary), once-logged and twice-logged forests in Sabah, Borneo. Logging had little effect on the overall richness of birds. Dung beetle richness declined following once-logging but did not decline further after twice-logging. The species composition of bird and dung beetle communities was altered, particularly after the second logging rotation, but globally imperilled bird species (IUCN Red List) did not decline further after twice-logging. Remarkably, over 75 per cent of bird and dung beetle species found in unlogged forest persisted within twice-logged forest. Although twice-logged forests have less biological value than primary and once-logged forests, they clearly provide important habitat for numerous bird and dung beetle species. Preventing these degraded forests from being converted to oil palm should be a priority of policy-makers and conservationists.     

Minimizing the biodiversity impact of Neotropical oil palm development

Oil palm agriculture is rapidly expanding in the Neotropics, at the expense of a range of natural and seminatural habitats. A key question is how this expansion should be managed to reduce negative impacts on biodiversity. Focusing on the Llanos of Colombia, a mixed grassland–forest system identified as a priority zone for future oil palm development, we survey communities of ants, dung beetles, birds and herpetofauna occurring in oil palm plantations and the other principal form of agriculture in the region – improved cattle pasture – together with those of surrounding natural forests. We show that oil palm plantations have similar or higher species richness across all four taxonomic groups than improved pasture. For dung beetles, species richness in oil palm was equal to that of forest, whereas the other three taxa had highest species richness in forests. Hierarchical modelling of species occupancy probabilities indicated that oil palm plantations supported a higher proportion of species characteristic of forests than did cattle pastures. Across the bird community, occupancy probabilities within oil palm were positively influenced by increasing forest cover in a surrounding 250 m radius, whereas surrounding forest cover did not strongly influence the occurrence of other taxonomic groups in oil palm. Overall, our results suggest that the conversion of existing improved pastures to oil palm has limited negative impacts on biodiversity. As such, existing cattle pastures of the Colombian Llanos could offer a key opportunity to meet governmental targets for oil palm development without incurring significant biodiversity costs. Our results also highlight the value of preserving remnant forests within these agricultural landscapes, protecting high biodiversity and exporting avian ‘spill‐over’ effects into oil palm plantations.     

Microclimate and habitat heterogeneity through the oil palm lifecycle

The rapid expansion of oil palm cultivation and corresponding deforestation has invoked widespread concern for biodiversity in Southeast Asia and throughout the tropics. However, no study explicitly addresses how habitat characteristics change when (1) forest is converted to oil palm, or (2) through the dynamic 25–30-year oil palm lifecycle. These two questions are fundamental to understanding how biodiversity will be impacted by oil palm development.Our results from a chronosequence study on microclimate and vegetation structure in oil palm plantations surrounding the Pasoh Forest Reserve, Peninsular Malaysia, show dramatic habitat changes when forest is converted to oil palm. However, they also reveal substantial habitat heterogeneity throughout the plantation lifecycle. Oil palm plantations are created by clear-cutting forests and then terracing the land. This reduces the 25 m-tall forest canopy to bare ground with a harsh microclimate. Eight-year-old oil palm plantations had 4 m open-canopies; 22-year-old plantations had 13 m closed-canopies. Old plantations had significantly more buffered microclimates than young plantations. Understory vegetation was twice as tall in young plantations, but leaf litter depth and total epiphyte abundance were double in old plantations. Nonetheless, leaf litter coverage was patchy throughout the oil palm life cycle due to the stacking of all palm fronds. Overall, oil palm plantations were substantially hotter (+2.84 °C) and drier (+0.80 hPa vapor pressure deficit), than forests during diurnal hours. However, there were no nocturnal microclimate differences between forests and plantations. Finally, we describe how the variable retention of old palm trees during crop rotation can retain habitat features and maintain more stable microclimate conditions than clear-cutting senescent plantations. We discuss the implications of habitat changes for biodiversity and introduce three methods to utilize temporal habitat heterogeneity to enhance the quality of the oil palm landscape matrix.     

Four Decades of Forest Persistence,Clearance and Logging on Borneo

The native forests of Borneo have been impacted by selective logging, fire, and conversion to plantations at unprecedented scales since industrial-scale extractive industries began in the early 1970s. There is no island-wide documentation of forest clearance or logging since the 1970s. This creates an information gap for conservation planning, especially with regard to selectively logged forests that maintain high conservation potential. Analysing LANDSAT images, we estimate that 75.7% (558,060 km²) of Borneo''s area (737,188 km²) was forested around 1973. Based upon a forest cover map for 2010 derived using ALOS-PALSAR and visually reviewing LANDSAT images, we estimate that the 1973 forest area had declined by 168,493 km² (30.2%) in 2010. The highest losses were recorded in Sabah and Kalimantan with 39.5% and 30.7% of their total forest area in 1973 becoming non-forest in 2010, and the lowest in Brunei and Sarawak (8.4%, and 23.1%). We estimate that the combined area planted in industrial oil palm and timber plantations in 2010 was 75,480 km², representing 10% of Borneo. We mapped 271,819 km of primary logging roads that were created between 1973 and 2010. The greatest density of logging roads was found in Sarawak, at 0.89 km km⁻², and the lowest density in Brunei, at 0.18 km km⁻². Analyzing MODIS-based tree cover maps, we estimate that logging operated within 700 m of primary logging roads. Using this distance, we estimate that 266,257 km² of 1973 forest cover has been logged. With 389,566 km² (52.8%) of the island remaining forested, of which 209,649 km² remains intact. There is still hope for biodiversity conservation in Borneo. Protecting logged forests from fire and conversion to plantations is an urgent priority for reducing rates of deforestation in Borneo.     

Ecological impacts of oil palm agriculture on forest mammals in plantation estates and smallholdings

Global oil palm expansion has caused substantial ecological damage to tropical biodiversity. We quantified wild mammal richness in large oil palm plantation estates and semi-traditional oil palm smallholdings in Peninsular Malaysia. We sampled 41 plantation estates and 14 smallholdings, and used line-transect surveys coupled with semi-structured interviews to develop a database of the native mammals found in oil palm landscapes. Semi-structured interviews revealed a total of 32 mammal species, including 13 IUCN Red Listed taxa of high conservation value. Our results showed that human activity and the size of patches of remnant rainforest were important factors influencing the richness of mammal species in oil palm landscapes. More carnivorous and herbivorous species were reported in smallholdings than plantation estates, most probably as a response to greater habitat heterogeneity in smallholdings. All species, irrespective of conservation status, were more likely to be recorded in oil palm plantation estates and smallholdings that supported large areas of native forest. Our findings suggest that biodiversity conservation in oil palm landscapes will require a variety of conservation approaches. Minimizing poaching, reducing disturbance from human activity, and protecting existing forest patches appear particularly important. Strategies to promote the persistence of both high and low conservation value species should be adopted as part of a strengthened certification scheme for oil palm production.     

Can Management Improve the Value of Shade Plantations for the Endemic Species of São Tomé Island?

Cocoa and coffee are among the most valuable tropical crops, with much of their production in areas of high biodiversity. Although this could suggest a conflict between agricultural expansion and biodiversity conservation, these crops are normally grown in shade plantations—a more biodiversity‐friendly agroforestry system. Using São Tomé Island as a case study, we examined if shade plantation can benefit biodiversity by protecting extinction‐prone island endemic species. We found that shade plantations held rich assemblages, even in comparison with forest: we estimated 30 bird and 74 tree species occurring in plantations compared to 24 bird and 108 tree species in forests. However, the structure of the assemblages was significantly different between ecosystems, with an average dissimilarity of 33.8 percent and 87.9 percent for birds and trees, respectively. Shade plantations had consistently less endemic species than the forest; we estimated a drop from 17 to 13 in birds and from 17 to 3 in trees. We also found that despite marked differences in the response of bird species to the vegetation characteristics of shade plantations, there was a strong positive link between aboveground tree biomass and endemic species richness and abundance. These results show that shade plantations hold assemblages impoverished in endemic species, but that management can improve their value for the conservation of these species. Finally, we suggest that biodiversity‐friendly certification and carbon markets are used to implement and guarantee the long‐term economical sustainability of practices that favor the endemic species in São Tomé's shade plantations.     

Ant mosaics occur in SE Asian oil palm plantation but not rain forest and are influenced by the presence of nest‐sites and non‐native species

Interaction networks within biotic communities can be dramatically altered by anthropogenic habitat modification. Ants, an important ecological group, often interact competitively to form mosaic‐like patterns in disturbed plantation habitats, in which dominant species form mutually exclusive territories. However, the existence of these ant mosaics in pristine forests is contentious. Here we assess the relative strengths of ant competitive interactions in oil palm plantation and primary rain forest in Sabah, Malaysia, using null models of species co‐occurrence. We use two metrics: the C‐score, which measures mean degree of overall co‐occurrence, and a novel metric, the C_var‐score, which measures the variance in degree of co‐occurrence. We also investigate the role of nest sites by collecting ants from canopy and leaf litter microhabitats, and from epiphytic ferns, an important nest site for canopy ants. Furthermore, we assess whether non‐native species, which were widespread in oil palm plantation (61 occurrences vs five in rain forest) are important in driving the formation of ant mosaics. We found no evidence for ant mosaics in any primary forest microhabitat. In oil palm plantation, segregation between species was pronounced in epiphytes, weak in the rest of the canopy and absent in leaf litter communities. Intriguingly, exclusion of non‐native ant species from analyses increased the degree of negative species co‐occurrence in all three microhabitats, with species segregation in the oil palm canopy becoming statistically significant. Our results suggest that invasion of plantation habitats by non‐native species does not drive increased species segregation in ant communities. Rather, high degrees of species segregation might relate to changes in the importance of canopy nest sites, with colonies competing more strongly for these in plantations. In primary forests, weaker nest‐site limitation and the highly complex, more vertically stratified, non‐uniform canopy could lead to random co‐occurrence between ant species at the scales studied here.