Using a “time machine” to test for local adaptation of aquatic microbes to temporal and spatial environmental variation

Local adaptation occurs when different environments are dominated by different specialist genotypes, each of which is relatively fit in its local conditions and relatively unfit under other conditions. Analogously, ecological species sorting occurs when different environments are dominated by different competing species, each of which is relatively fit in its local conditions. The simplest theory predicts that spatial, but not temporal, environmental variation selects for local adaptation (or generates species sorting), but this prediction is difficult to test. Although organisms can be reciprocally transplanted among sites, doing so among times seems implausible. Here, we describe a reciprocal transplant experiment testing for local adaptation or species sorting of lake bacteria in response to both temporal and spatial variation in water chemistry. The experiment used a –80°C freezer as a “time machine.” Bacterial isolates and water samples were frozen for later use, allowing transplantation of older isolates “forward in time” and newer isolates “backward in time.” Surprisingly, local maladaptation predominated over local adaptation in both space and time. Such local maladaptation may indicate that adaptation, or the analogous species sorting process, fails to keep pace with temporal fluctuations in water chemistry. This hypothesis could be tested with more finely resolved temporal data.     

Will travel for food: spatial discounting in two new world monkeys

Nonhuman animals steeply discount the future, showing a preference for small, immediate over large, delayed rewards. Currently unclear is whether discounting functions depend on context. Here, we examine the effects of spatial context on discounting in cotton-top tamarins (Saguinus oedipus) and common marmosets (Callithrix jacchus), species known to differ in temporal discounting. We presented subjects with a choice between small, nearby rewards and large, distant rewards. Tamarins traveled farther for the large reward than marmosets, attending to the ratio of reward differences rather than their absolute values. This species difference contrasts with performance on a temporal task in which marmosets waited longer than tamarins for the large reward. These comparative data indicate that context influences choice behavior, with the strongest effect seen in marmosets who discounted more steeply over space than over time. These findings parallel details of each species' feeding ecology. Tamarins range over large distances and feed primarily on insects, which requires using quick, impulsive action. Marmosets range over shorter distances than tamarins and feed primarily on tree exudates, a clumped resource that requires patience to wait for sap to exude. These results show that discounting functions are context specific, shaped by a history of ecological pressures.     

Measuring the synanthropy of species and communities to monitor the effects of urbanization on biodiversity

Urbanization is considered as one of the most important land-use and land-cover (LULC) changes with multiple pervasive effects on biodiversity. However, the quantitative assessment of biodiversity responses to urbanization remains challenging because some species can be directly and negatively affected by the spread of human settlements, while others can benefit from this LULC change. Moreover, although species sensitivity to urban settlements (their “synanthropy”) can either correspond to the spatial segregation of individuals within urban habitats or to their positive temporal trends in these habitats, these two facets are hardly distinguished explicitly. Here, we confronted the fine-scale spatial distribution of all the buildings in France with the spatial distribution and population trends of the 119 most common French breeding birds monitored in 2124 plots from 2001 to 2012. We developed and tested two indicators of “synanthropy”. The first indicator (S1) differentiates species along a continuous gradient from urban “avoiders” (low S1) to urban “dwellers” (high S1). The second indicator measures the beneficial or detrimental effect of building densities on the temporal trends of the populations. It allows the segregation among urban “losers” having lower temporal trends with increasing buildings (low S2) from urban “winners” (high S2) having more positive trends in more urbanized areas. We then tested the relationships between S1 and S2 with a set of species and life history traits. Finally, we transposed these species indicators to communities using community weighted means to test the link between the synanthropy of communities with bird species richness, and the spatial, temporal and spatio-temporal trends of the synanthropy of bird communities. We found that 43% of the species were “urban dwellers”, and 18% “urban winners”. Both urban dwellers and winners were species widely distributed and locally abundant. Urban dwellers were mainly ground feeders but did not nest on the ground. At the community level, high species richness was associated with medium-values of community synanthropy, following the intermediate-disturbance hypothesis. We found that the average value of community synanthropy and their trend were not randomly distributed in space. These two indicators of synanthropy can be used in different taxonomic groups and areas to assess the proportion of synanthropic species within communities, to monitor their temporal trends and their spatial distribution and represent a straightforward complement to the synthetic indicators of human footprint on biodiversity.     

Marked Point Process: Using Correlation Functions to Explore a Spatial Data Set

The relationship between the locations of the clumps of sprouts, some morphological characteristics of the clumps and the local soil environment in an old sweet chestnut coppice are studied. The theory of marked point process, which has not yet been used extensively in forestry studies, is shown to be adequate for the analysis of this type of spatial data. The marks correspond to morphological characteristics of the clumps: “diameter”, “number of sprouts”, “height at one year”, and “height at three years”. Several covariance functions are described which give a method for exploring the spatial relationships within the stand. Some of these functions are introduced for the first time in an actual statistical analysis. By using these functions, it is shown that the clumps are regularly distributed. The variables “diameter” and “number of sprouts” are strongly spatially negatively correlated, whereas the heights are slightly or not correlated. By categorising the individuals according to the mark values, it is shown that the small clumps tended to be aggregated in the gaps between medium and large clumps. Values of heights in the ties of the distribution are related as well as their spatial correlation to the local soil environment.     

Formal Comparison of Dual-Parameter Temporal Discounting Models in Controls and Pathological Gamblers

Temporal or delay discounting refers to the phenomenon that the value of a reward is discounted as a function of time to delivery. A range of models have been proposed that approximate the shape of the discount curve describing the relationship between subjective value and time. Recent evidence suggests that more than one free parameter may be required to accurately model human temporal discounting data. Nonetheless, many temporal discounting studies in psychiatry, psychology and neuroeconomics still apply single-parameter models, despite their oftentimes poor fit to single-subject data. Previous comparisons of temporal discounting models have either not taken model complexity into account, or have overlooked particular models. Here we apply model comparison techniques in a large sample of temporal discounting datasets using several discounting models employed in the past. Among the models examined, an exponential-power model from behavioural economics (CS model, Ebert & Prelec 2007) provided the best fit to human laboratory discounting data. Inter-parameter correlations for the winning model were moderate, whereas they were substantial for other dual-parameter models examined. Analyses of previous group and context effects on temporal discounting with the winning model provided additional theoretical insights. The CS model may be a useful tool in future psychiatry, psychology and neuroscience work on inter-temporal choice.     

The dominant species of natural enemies of Pentatomidae in the peak period

This paper aims to analyse how to effectively protect and scientifically utilize the natural enemies of Pentatomidae in tea plantations in the peak period. In this paper, the spatial, quantitative and temporal relationships between Pentatomidae and its natural enemies in “Pingyangtezao”, “Wuniuzao”, “Huangshandayezhong”, “Anjibaicha”,”Longjing 43″ and “Nongkangzao” tea gardens in Hefei, China were comprehensively compared and analyzed with the methods of geostatistical analysis, gray system analysis and temporal ecotone overlap index analysis. According to the size of the closeness index, the top three natural enemies with the largest sum of spatial, quantitative, and temporal closeness indexes in the six tea gardens were Clubiona japonicola (X₇, 16.514), Oxyopes sertatus (X₅, 16.390) and Xysticus ephippiafus (X₂, 16.270). The size of the ratio between the number of Pentatomidae individuals and natural enemies largely determines whether the natural enemies follow Pentatomidae pests closely or not. The better the growth of tea plantations and the richer the diversity of pest species, the more accurately the predation preference of natural enemies can be reflected. In the control of Pentatomidae, specific analysis should be made according to the occurrence characteristics of target pests in different tea plantations and the basic attributes of tea plantations (species, growth, population characteristics of natural enemies and pests, etc.) in order to scientifically utilize its natural enemies.     

The Challenge to Restore Processes in Face of Nonlinear Dynamics—On the Crucial Role of Disturbance Regimes

Increasingly, restoration ecologists and managers are challenged to restore ecological processes that lead to self‐sustaining ecosystem dynamics. Due to changing environmental conditions, however, restoration goals need to include novel regimes beyond prior reference conditions or reference dynamics. In face of these fundamental challenges in process‐based restoration ecology, disturbance ecology can offer useful insights. Here, I discuss the contribution of disturbance ecology to understanding assembly rules, ecosystem dynamics, regime shifts, and nonlinear dynamics. Using the patch and multipatch concept, all insights are organized according to two spatial and two temporal categories: “patch–event,”“patch–multievent,”“multipatch–event,” and “multipatch–multievent.” This concept implies the consideration of both spatial patterns and temporal rhythms inside and outside of a restoration site. Emerging issues, such as uncoupling of internal and external dynamics, are considered.     

Spatial grain of adaptation is much finer than ecoregional‐scale common gardens reveal

Adaptive variation among plant populations must be known for effective conservation and restoration of imperiled species and predicting their responses to a changing climate. Common‐garden experiments, in which plants sourced from geographically distant populations are grown together such that genetic differences may be expressed, have provided much insight on adaptive variation. Common‐garden experiments also form the foundation for climate‐based seed‐transfer guidelines. However, the spatial scale at which population differentiation occurs is rarely addressed, leaving a critical information gap for parameterizing seed‐transfer guidelines and assessing species’ climate vulnerability. We asked whether adaptation was evident among populations of a foundational perennial within a single “empirical” seed‐transfer zone (based on previous common‐garden findings evaluating very distant populations) but different “provisional” seed zones (groupings of areas of similar climate and are not parameterized from common‐garden data). Seedlings from three populations originating from similar conditions within an intermediate elevation were planted into gardens nearby at the same elevation, or 250–450 m higher or lower in elevation and 0.4–25 km away. Substantial variation was observed between gardens in survival (ranging 2%–99%), foliar crown volume (7.8–22.6 dm³), and reproductive effort (0%–65%), but not among the three transplanted populations. The between garden variation was inversely related to climatic differences between the gardens and seed‐source populations, specifically the site differences in maximum–minimum annual temperatures. Results suggest that substantial site‐specificity in adaptation can occur at finer scales than is accounted for in empirical seed‐transfer guidance when the guidance is derived from broadscale common‐garden studies. Being within the same empirical seed zone, geographic unit, and even within 10 km distance may not qualify as “local” in the context of seed transfer. Moving forward, designing common‐garden experiments so that they allow for testing the scale of adaptation will help in translating the resulting seed‐transfer guidance to restoration projects.     

Temporal Coherence of Chlorophyll a during a Spring Phytoplankton Bloom in Xiangxi Bay of Three‐Gorges Reservoir,China

Algal bloom phenomenon was defined as “the rapid growth of one or more phytoplankton species which leads to a rapid increase in the biomass of phytoplankton”, yet most estimates of temporal coherence are based on yearly or monthly sampling frequencies and little is known of how synchrony varies among phytoplankton or of the causes of temporal coherence during spring algal bloom. In this study, data of chlorophyll a and related environmental parameters were weekly gathered at 15 sampling sites in Xiangxi Bay of Three‐Gorges Reservoir (TGR, China) to evaluate patterns of temporal coherence for phytoplankton during spring bloom and test if spatial heterogeneity of nutrient and inorganic suspended particles within a single ecosystem influences synchrony of spring phytoplankton dynamics. There is a clear spatial and temporal variation in chlorophyll a across Xiangxi Bay. The degree of temporal coherence for chlorophyll a between pairs of sites located in Xiangxi Bay ranged from –0.367 to 0.952 with mean and median values of 0.349 and 0.321, respectively. Low levels of temporal coherence were often detected among the three stretches of the bay (Down reach, middle reach and upper reach), while high levels of temporal coherence were often found within the same reach of the bay. The relative difference of DIN between pair sites was the strong predictor of temporal coherence for chlorophyll a in down and middle reach of the bay, while the relative difference in Anorganic Suspended Solids was the important factor regulating temporal coherence in middle and upper reach. Contrary to many studies, these results illustrate that, in a small geographic area (a single reservoir bay of approximately 25 km), spatial heterogeneity influence synchrony of phytoplankton dynamics during spring bloom and local processes may override the effects of regional processes or dispersal. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Male response to historical and geographical variation in bird song

In many species, individuals discriminate among sexual signals of conspecific populations in the contexts of mate choice and male–male competition. Differences in signals among populations (geographical variation) are in part the result of signal evolution within populations (temporal variation). Understanding the relative effect of temporal and geographical signal variation on signal salience may therefore provide insight into the evolution of behavioural discrimination. However, no study, to my knowledge, has compared behavioural response to historical signals with response to current signal variation among populations. Here, I measured the response of male white-crowned sparrows (Zonotrichia leucophrys) to historical songs compared with current songs from their local population, a nearby non-local population and a distant population. Males responded most strongly to current local songs, less, but equally, to historical local and current non-local songs, and least to songs of the distant population. Moreover, response to both temporal and geographical variation in song was proportional to how much songs differed acoustically from current local songs. Signal evolution on an ecological time scale appears to have an effect on signal salience comparable to differences found between current neighbouring populations, supporting the idea that behavioural discrimination among learned signals of conspecific populations can evolve relatively rapidly.     

Spatial environmental complexity mediates sexual conflict and sexual selection in Drosophila melanogaster

Sexual selection is an important agent of evolutionary change, but the strength and direction of selection often vary over space and time. One potential source of heterogeneity may lie in the opportunity for male–male and/or male–female interactions imposed by the spatial environment. It has been suggested that increased spatial complexity permits sexual selection to act in a complementary fashion with natural selection (hastening the loss of deleterious alleles and/or promoting the spread of beneficial alleles) via two (not mutually exclusive) pathways. In the first scenario, sexual selection potentially acts more strongly on males in complex environments, allowing males of greater genetic “quality” a greater chance of outcompeting rivals, with benefits manifested indirectly in offspring. In the second scenario, increased spatial complexity reduces opportunities for males to antagonistically harm females, allowing females (especially those of greater potential fecundities) to achieve greater reproductive success (direct fitness benefits). Here, using Drosophila melanogaster, we explore the importance of these mechanisms by measuring direct and indirect fitness of females housed in simple vial environments or in vials in which spatial complexity has been increased. We find strong evidence in favor of the female conflict‐mediated pathway as individuals in complex environments remated less frequently and produced more offspring than those housed in a simpler spatial environment, but no difference in the fitness of sons or daughters. We discuss these results in the context of other recent studies and what they mean for our understanding of how sexual selection operates.     

Reconciling neuronal representations of schema,abstract task structure,and categorization under cognitive maps in the entorhinal-hippocampal-frontal circuits

Learning leads to a neuronal representation of acquired knowledge. This idea of knowledge representation was traditionally developed as a “cognitive map” of spatial memory represented in the hippocampus. The framework of cognitive mapping has been extended in the past decade to include not only spatial memory, but also non-spatial factual and temporal memory. Following this conceptual advancement, a line of recent neurophysiological research discovered such knowledge representations not only in the hippocampus, but also in the entorhinal cortex and frontal cortex. Although the distinct terms “cognitive map,” “schema,” “abstract task structure” or “categorization” were used in these studies, it is likely that these terms can be reconciled as a common mechanism of learned knowledge representations. Future experimental work will be required to differentiate the parametric nature of knowledge representations across brain areas.     

Pollutant dispersion in the urban environment

Flow and pollutant dispersion models are important elements for managing air quality in urban areas, to complement and, sometimes, even substitute monitoring. Developing fast and reliable parameterisations is necessary to improve the spatial and temporal resolutions of current mathematical prediction models. Recently there has been a growing interest in the so-called “neighbourhood scale” models, that offer relatively high spatial and temporal resolutions while keeping the needed computational resources at a minimum. This paper describes experimental and numerical simulations performed to explore the interaction of flow and pollutant dispersion with local building and street geometry. The methods developed may be useful as a way for cities to improve air quality management.     

Guest-Editorial Introduction: Converging Evolutionary Patterns in Life and Culture

The natural world demonstrates signs of spatial–temporal order, an order that appears to us through a series of recognizable, recurring and consecutive patterns, i.e. regularities in forms, functions, behaviors, events and processes. These patterns lend insight into the modes and tempos of evolution and thus into the units, levels, and mechanisms that underlie the evolutionary hierarchy. Contributors to this special issue analyze converging patterns in the biological and sociocultural realm across and beyond classic divisions between micro- and macro-evolution; horizontal/reticulate and vertical evolution; phylogeny, ontogeny and ecology; synchronic and diachronic sociocultural and linguistic research; and tree and network diagrams. Explanations are sought in complexity theory, major transitions of evolution, and process and mechanism approaches to change; and consequences for notions such as “life”, “species”, “biological individuality”, “units” and “levels” of evolution are given.     

不同品种油茶细根时空分布动态

以赣无1、赣永5、长林4、长林40和赣447 等5个品种的油茶林为研究对象,采用微根管技术对0～40 cm土壤剖面的油茶细根进行了为期一年的观测,并分析了总根尖数(TRT)、平均根长密度(ARLD)、平均直径(ARD)的时空分布动态规律.结果表明: 2016年下半年,各品种的TRT和ARLD变化相对稳定,2017年上半年,各品种的TRT和ARLD变化幅度较大,尤其体现在赣无1与长林40中.赣无1的TRT和ARLD在2017年5月出现峰值,长林4的ARD在2017年3月出现峰值.赣无1的TRT和ARLD 以及长林4的ARD在整个观测期都显著大于其他品种.不同品种油茶细根在土层中的空间分布规律及动态变化存在明显差异,赣无1和赣447的细根主要分布在0～20 cm土层中,长林4和长林40的细根以20～40 cm土层居多,空间分布动态变化较其他3个品种稳定;赣永5的空间分布动态变化幅度较大,根量分布各土层无显著差异;长林4的ARD表现为20～40 cm土层>0～20 cm土层,其他品种的ARD在不同土层中无显著差异.赣无1的细根生物量最多,主要分布在上层;长林4的细根直径最粗,主要分布在下层.     

Americans' Nanotechnology Risk Perception:

Although proposed nanotechnology applications hold great promise, little is known about the potential associated risks. This lack of clarity on the level of risk associated with nanotechnology has forced people to make decisions about consumption with incomplete information. A national random digit dialing telephone survey (N= 1014) was conducted in the United States to assess knowledge of nanotechnology and perception of risk in August 2006. This investigation looks critically at individuals' responses to questions about the balance of risks and benefits of nanotechnology, both at the outset of the survey and after respondents were given a brief introduction to the potential benefits and risks of the technology. Models were created to characterzise respondents who said they did not know how nanotechnology's risks and benefits balanced in the “preinformation” condition but who, in the postinformation condition, had a different opinion. Respondents who were highly educated, members of the Republican Party, or male were more likely to switch from “don't know” in the preinformation condition to “benefits outweigh risks” in the postinformation condition, whereas respondents who were less educated, members of the Democratic Party, or female were more likely to switch from “don't know” in the preinformation condition to “risks outweigh benefits” in the postinformation condition. This is the first study to our knowledge to develop a significant model of nanotechnology risk perception change, specifically with regard to gender differences. The power of information provision to sway opinions is also supported, highlighting the importance of developing educational efforts targeting vulnerable populations.     

Temporal Vulnerability and the Post-Disaster ‘Window of Opportunity to Woo:’ a Case Study of an African-American Floodplain Neighborhood after Hurricane Floyd in North Carolina

After major flooding associated with Hurricane Floyd (1999) in North Carolina, mitigation managers seized upon the “window of opportunity” to woo residents to accept residential buyout offers despite sizable community resistance. I present a theoretical explanation of how post-crisis periods turn into “opportunities” based on a temporal referential theory that complements alternative explanations based on temporal coincidence, panarchy, and shock-doctrine theories. Results from fieldwork conducted from 2002 to 2004 illustrate how several temporal influences compromised collective calibration of “normalcy” in local cultural models, leading to an especially heightened vulnerability to collective surprise. Four factors particularly influenced this temporal vulnerability: 1) epistemological uncertainty of floodplain dynamics due to colonization; 2) cultural practices that maintained a casual amnesia; 3) meaning attributed to stochastic timing of floods; and 4) competitive impact of referential flood baseline attractors.     

Spatial effects in social dilemmas

Social dilemmas and the evolutionary conundrum of cooperation are traditionally studied through various kinds of game theoretical models such as the prisoner's dilemma, public goods games, snowdrift games or by-product mutualism. All of them exemplify situations which are characterized by different degrees of conflicting interests between the individuals and the community. In groups of interacting individuals, cooperators produce a common good benefitting the entire group at some cost to themselves, whereas defectors attempt to exploit the resource by avoiding the costly contributions. Based on synergistic or discounted accumulation of cooperative benefits a unifying theoretical framework was recently introduced that encompasses all games that have traditionally been studied separately (Hauert, Michor, Nowak, Doebeli, 2005. Synergy and discounting of cooperation in social dilemmas. J. Theor. Biol., in press.). Within this framework we investigate the effects of spatial structure with limited local interactions on the evolutionary fate of cooperators and defectors. The quantitative effects of space turn out to be quite sensitive to the underlying microscopic update mechanisms but, more general, we demonstrate that in prisoner's dilemma type interactions spatial structure benefits cooperation-although the parameter range is quite limited-whereas in snowdrift type interactions spatial structure may be beneficial too, but often turns out to be detrimental to cooperation.