共查询到20条相似文献，搜索用时 15 毫秒
1.
Michael D. Collins Daniel Simberloff Edward F. Connor 《Journal of Biogeography》2011,38(12):2373-2383
Aim We examine a presence–absence matrix of the avifauna of the Bismarck Archipelago, for which the concept of competitively driven community assembly rules was formulated, to determine whether data support widespread competitive determination of geographical distributions. Location Bismarck Archipelago. Methods We obtained occurrences of 154 land and freshwater bird species on 31 islands. We calculated the observed number of checkerboards for all species pairs, for congeneric species pairs and for pairs of species within guilds, and employed randomization techniques to detect unusual co‐occurrence patterns. Results Compared with random expectations, there are excesses of checkerboard pairs within both genera and defined guilds, but a detailed examination shows that competition is a cogent possible explanation in few instances. For many checkerboard pairs, species are not widely interspersed but are regionally allopatric, which probably reflects historical biogeography and dispersal limitation. Most congeneric and intraguild checkerboards include a species classified as a supertramp; when supertramps are omitted, there are 11 congeneric checkerboards and four intraguild but heterogeneric checkerboards. Main conclusions In isolation, presence–absence matrices provide limited insight into the role of competition in structuring bird communities of the Bismarcks. A major problem is disentangling historical geography and colonization history of the archipelago from the present‐day ecology of the species. Examination of observed checkerboards from a geographically explicit perspective and with knowledge of colonization routes suggests that many checkerboards are likely to result, at least in part, from historical biogeography and supertramps. Although species may be forced into supertramp status by competition, other factors (e.g. habitat preference) may be causal, and biogeographical distributions alone cannot distinguish between causes. 相似文献
2.
Mário Almeida‐Neto Daniella M. B. Frensel Werner Ulrich 《Global Ecology and Biogeography》2012,21(7):772-777
Baselga [Partitioning the turnover and nestedness components of beta diversity. Global Ecology and Biogeography, 19 , 134–143, 2010] proposed pairwise (βnes) and multiple‐site (βNES) beta‐diversity measures to account for the nestedness component of beta diversity. We used empirical, randomly created and idealized matrices to show that both measures are only partially related to nestedness and do not fit certain fundamental requirements for consideration as true nestedness‐resultant dissimilarity measures. Both βnes and βNES are influenced by matrix size and fill, and increase or decrease even when nestedness remains constant. Additionally, we demonstrate that βNES can yield high values even for matrices with no nestedness. We conclude that βnes and βNES are not true measures of the nestedness‐resultant dissimilarity between sites. Actually, they quantify how differences in species richness that are not due to species replacement contribute to patterns of beta diversity. Finally, because nestedness is a special case of dissimilarity in species composition due to ordered species loss (or gain), the extent to which differences in species composition is due to nestedness can be measured through an index of nestedness. 相似文献
3.
There is a rich amount of information in co‐occurrence (presence–absence) data that could be used to understand community assembly. This proposition first envisioned by Forbes (1907) and then Diamond (1975) prompted the development of numerous modelling approaches (e.g. null model analysis, co‐occurrence networks and, more recently, joint species distribution models). Both theory and experimental evidence support the idea that ecological interactions may affect co‐occurrence, but it remains unclear to what extent the signal of interaction can be captured in observational data. It is now time to step back from the statistical developments and critically assess whether co‐occurrence data are really a proxy for ecological interactions. In this paper, we present a series of arguments based on probability, sampling, food web and coexistence theories supporting that significant spatial associations between species (or lack thereof) is a poor proxy for ecological interactions. We discuss appropriate interpretations of co‐occurrence, along with potential avenues to extract as much information as possible from such data. 相似文献
4.
Héctor T. Arita 《Global Ecology and Biogeography》2016,25(11):1397-1400
Veech (2013, Global Ecology and Biogeography, 22 , 252–260) introduced a formula to calculate the probability of two species co‐occurring in various sites under the assumption of statistical independence between the two distributional patterns. He presented his model as a new procedure, a ‘pairwise approach’, different from analyses of whole presence–absence matrices to examine patterns of co‐occurrence. Here I show that: (1) Veech's method is identical to Fisher's exact test, a standard procedure for measuring the statistical association between two discrete variables; (2) in a broad sense, the pairwise approach is very similar to early analyses of spatial association, such as the one advanced by Forbes in 1907; (3) implicit in Veech's formula is a sampling scheme that is indistinguishable from well‐known matrix‐level null models that randomize the distribution of species among equiprobable sites; (4) pairwise co‐occurrence patterns can be analysed using any matrix‐level null model, so pairwise comparisons are not limited to using Veech's formula. The methodological distinction that Veech proposed between pairwise and matrix‐level approaches does not in fact exist, although the conceptual distinction between the two approaches is still a debated topic. 相似文献
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Héctor T. Arita Andrés Christen Pilar Rodríguez Jorge Soberón 《Global Ecology and Biogeography》2012,21(2):282-292
Aim A great deal of information on distribution and diversity can be extracted from presence–absence matrices (PAMs), the basic analytical tool of many biogeographic studies. This paper presents numerical procedures that allow the analysis of such information by taking advantage of mathematical relationships within PAMs. In particular, we show how range–diversity (RD) plots summarize much of the information contained in the matrices by the simultaneous depiction of data on distribution and diversity. Innovation We use matrix algebra to extract and process data from PAMs. Information on the distribution of species and on species richness of sites is computed using the traditional R (by rows) and Q (by columns) procedures, as well as the new Rq (by rows, considering the structure of columns) and Qr (by columns, considering the structure by rows) methods. Matrix notation is particularly suitable for summarizing complex calculations using PAMs, and the associated algebra allows the implementation of efficient computational programs. We show how information on distribution and species richness can be depicted simultaneously in RD plots, allowing a direct examination of the relationship between those two aspects of diversity. We explore the properties of RD plots with a simple example, and use null models to show that while parameters of central tendency are not affected by randomization, the dispersion of points in RD plots does change, showing the significance of patterns of co‐occurrence of species and of similarity among sites. Main conclusion Species richness and range size are both valid measures of diversity that can be analysed simultaneously with RD plots. A full analysis of a system requires measures of central tendency and dispersion for both distribution and species richness. 相似文献
7.
Aim
Stacked species distribution models (SDMs) are an important step towards estimating species richness, but frequently overpredict this metric and therefore erroneously predict which species comprise a given community. We test the idea that developing hypotheses about accessible area a priori can greatly improve model performance. By integrating dispersal ability via accessible area into SDM creation, we address an often‐overlooked facet of ecological niche modelling.Innovation
By limiting the training and transference areas to theoretically accessible areas, we are creating more accurate SDMs on the basis of a taxon's explorable environments. This limitation of space and environment is a more accurate reflection of a taxon's true dispersal properties and more accurately reflects the geographical and environmental space to which a taxon is exposed. Here, we compare the predictive performance of stacked SDMs derived from spatially constrained and unconstrained training areas.Main conclusions
Restricting a species’ training and transference areas to a theoretically accessible area greatly improves model performance. Stacked SDMs drawn from spatially restricted training areas predicted species richness and community composition more accurately than non‐restricted stacked SDMs. These accessible area‐based restrictions mimic true dispersal barriers to species and limit training areas to the suite of environments to those which a species is exposed to in nature. Furthermore, these restrictions serve to ‘clip’ predictions in geographical space, thus removing overpredictions in adjacent geographical regions where the species is known to be absent. 相似文献8.
Daniel Chapman Oliver L. Pescott Helen E. Roy Rob Tanner 《Journal of Biogeography》2019,46(5):1029-1040
9.
Y. Zhu S. A. Queenborough R. Condit S. P. Hubbell K. P. Ma L. S. Comita 《Ecology letters》2018,21(4):506-515
Species coexistence in diverse communities likely results from multiple interacting factors. Mechanisms such as conspecific negative density dependence (CNDD) and varying life‐history strategies related to resource partitioning are known to influence plant fitness, and thereby community composition and diversity. However, we have little understanding of how these mechanisms interact and how they vary across life stages. Here, we document the interaction between CNDD and life‐history strategy, based on growth‐mortality trade‐offs, from seedling to adult tree for 47 species in a tropical forest. Species’ life‐history strategies remained consistent across stages: fast‐growing species had higher mortality than slow‐growing species at all stages. In contrast, mean CNDD was strongest at early life stages (i.e. seedling, sapling). Fast‐growing species tended to suffer greater CNDD than slow‐growing species at several, but not all life stages. Overall, our results demonstrate that coexistence mechanisms interact across multiple life stages to shape diverse tree communities. 相似文献
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12.
Yin Liu Guo‐Liang Tian Man‐Lai Tang Kam Chuen Yuen 《Biometrical journal. Biometrische Zeitschrift》2019,61(6):1340-1370
Recently, although advances were made on modeling multivariate count data, existing models really has several limitations: (i) The multivariate Poisson log‐normal model (Aitchison and Ho, 1989) cannot be used to fit multivariate count data with excess zero‐vectors; (ii) The multivariate zero‐inflated Poisson (ZIP) distribution (Li et al., 1999) cannot be used to model zero‐truncated/deflated count data and it is difficult to apply to high‐dimensional cases; (iii) The Type I multivariate zero‐adjusted Poisson (ZAP) distribution (Tian et al., 2017) could only model multivariate count data with a special correlation structure for random components that are all positive or negative. In this paper, we first introduce a new multivariate ZAP distribution, based on a multivariate Poisson distribution, which allows the correlations between components with a more flexible dependency structure, that is some of the correlation coefficients could be positive while others could be negative. We then develop its important distributional properties, and provide efficient statistical inference methods for multivariate ZAP model with or without covariates. Two real data examples in biomedicine are used to illustrate the proposed methods. 相似文献
13.
Michael J. O'Brien Francisco I. Pugnaire Cristina Armas Susana Rodríguez‐Echeverría Christian Schöb 《Ecology and evolution》2017,7(7):2441-2448
The stress‐gradient hypothesis predicts a higher frequency of facilitative interactions as resource limitation increases. Under severe resource limitation, it has been suggested that facilitation may revert to competition, and identifying the presence as well as determining the magnitude of this shift is important for predicting the effect of climate change on biodiversity and plant community dynamics. In this study, we perform a meta‐analysis to compare temporal differences of species diversity and productivity under a nurse plant (Retama sphaerocarpa) with varying annual rainfall quantity to test the effect of water limitation on facilitation. Furthermore, we assess spatial differences in the herbaceous community under nurse plants in situ during a year with below‐average rainfall. We found evidence that severe rainfall deficit reduced species diversity and plant productivity under nurse plants relative to open areas. Our results indicate that the switch from facilitation to competition in response to rainfall quantity is nonlinear. The magnitude of this switch depended on the aspect around the nurse plant. Hotter south aspects under nurse plants resulted in negative effects on beneficiary species, while the north aspect still showed facilitation. Combined, these results emphasize the importance of spatial heterogeneity under nurse plants for mediating species loss under reduced precipitation, as predicted by future climate change scenarios. However, the decreased water availability expected under climate change will likely reduce overall facilitation and limit the role of nurse plants as refugia, amplifying biodiversity loss. 相似文献
14.
Jaime Fagúndez 《植被学杂志》2018,29(4):765-774
Questions
What is the general pattern of species co‐occurrence in managed heathlands? Is the pattern consistent among functional groups? Is it ruled by species competition, or by contrasting environments at a fine scale? Does grazing pressure and herbivore species condition species interactions?Location
Erica mackayana wet heaths, Galicia, NW Iberian Peninsula.Methods
A null model approach was used to compare species co‐occurrence with generated random matrices from 54 10‐m transects. The C‐score was obtained from the multispecies presence/absence matrix for each transect of shrubs and graminoids recorded at 25‐cm intervals. Differences in canopy height were recorded to assess the importance of the environment compared to inter‐specific competition. Results were linked to different levels of grazing pressure and herbivore species.Results
Species segregation was the main pattern for all species, but mainly among graminoid species compared to shrubs. Graminoids showed an even proportion of segregated pairs explained by different canopy heights and competition. These differences were mainly species environmental requirements of canopy height. Levels of grazing pressure enhanced species segregation in graminoids but had no effect on shrubs or the total species set.Conclusions
Competition and canopy height affect the E. mackayana heathland composition, but differently for functional groups. A heterogeneous vegetation profile with shrub mats and open gaps created by light grazing promotes species co‐existence within mats and competition in gaps. I suggest this is an optimum structure for the habitat to be targeted through management.15.
16.
Violette Le Féon Matthieu Aubert David Genoud Valérie Andrieu‐Ponel Paul Westrich Benoît Geslin 《Ecology and evolution》2018,8(3):1534-1542
In 2008, a new species for the French bee fauna was recorded in Allauch near Marseille: the giant resin bee, Megachile sculpturalis (Smith, 1853). This was the first European record of this species that is native to East Asia. To our knowledge, it is the first introduced bee species in Europe. Here, we provide an overview of the current distribution of M. sculpturalis in France and we describe the history of its range expansion. Besides our own observations, information was compiled from literature and Internet websites, and by contacting naturalist networks. We collected a total of 117 records (locality × year combinations) for the 2008–2016 period. The geographical range of M. sculpturalis has extended remarkably, now occupying a third of continental France, with the most northern and western records located 335 and 520 km from Allauch, respectively. Information on its phenology, feeding, and nesting behavior is also provided. We report several events of nest occupation or eviction of Osmia sp. and Xylocopa sp. individuals by M. sculpturalis. Our results show that M. sculpturalis is now well established in France. Given its capacity to adapt and rapidly expand its range, we recommend amplifying the monitoring of this species to better anticipate the changes in its geographical range and its potential impacts on native bees. 相似文献
17.
Anna M. Csergő Roberto Salguero‐Gómez Olivier Broennimann Shaun R. Coutts Antoine Guisan Amy L. Angert Erik Welk Iain Stott Brian J. Enquist Brian McGill Jens‐Christian Svenning Cyrille Violle Yvonne M. Buckley 《Ecology letters》2017,20(8):969-980
Correlative species distribution models are based on the observed relationship between species’ occurrence and macroclimate or other environmental variables. In climates predicted less favourable populations are expected to decline, and in favourable climates they are expected to persist. However, little comparative empirical support exists for a relationship between predicted climate suitability and population performance. We found that the performance of 93 populations of 34 plant species worldwide – as measured by in situ population growth rate, its temporal variation and extinction risk – was not correlated with climate suitability. However, correlations of demographic processes underpinning population performance with climate suitability indicated both resistance and vulnerability pathways of population responses to climate: in less suitable climates, plants experienced greater retrogression (resistance pathway) and greater variability in some demographic rates (vulnerability pathway). While a range of demographic strategies occur within species’ climatic niches, demographic strategies are more constrained in climates predicted to be less suitable. 相似文献
18.
Lei Chen Xiangcheng Mi Liza S. Comita Liwen Zhang Haibao Ren Keping Ma 《Ecology letters》2010,13(6):695-704
19.
Ylva Lekberg James D. Bever Rebecca A. Bunn Ragan M. Callaway Miranda M. Hart Stephanie N. Kivlin John Klironomos Beau G. Larkin John L. Maron Kurt O. Reinhart Michael Remke Wim H. van der Putten 《Ecology letters》2018,21(8):1268-1281
Plants interact simultaneously with each other and with soil biota, yet the relative importance of competition vs. plant–soil feedback (PSF) on plant performance is poorly understood. Using a meta‐analysis of 38 published studies and 150 plant species, we show that effects of interspecific competition (either growing plants with a competitor or singly, or comparing inter‐ vs. intraspecific competition) and PSF (comparing home vs. away soil, live vs. sterile soil, or control vs. fungicide‐treated soil) depended on treatments but were predominantly negative, broadly comparable in magnitude, and additive or synergistic. Stronger competitors experienced more negative PSF than weaker competitors when controlling for density (inter‐ to intraspecific competition), suggesting that PSF could prevent competitive dominance and promote coexistence. When competition was measured against plants growing singly, the strength of competition overwhelmed PSF, indicating that the relative importance of PSF may depend not only on neighbour identity but also density. We evaluate how competition and PSFs might interact across resource gradients; PSF will likely strengthen competitive interactions in high resource environments and enhance facilitative interactions in low‐resource environments. Finally, we provide a framework for filling key knowledge gaps and advancing our understanding of how these biotic interactions influence community structure. 相似文献
20.
Invasive, non‐native species can have tremendous impacts on biotic communities, where they reduce the abundance and diversity of local species. However, it remains unclear whether impacts of non‐native species arise from their high abundance or whether each non‐native individual has a disproportionate impact – that is, a higher per‐capita effect – on co‐occurring species compared to impacts by native species. Using a long‐term study of wetlands, we asked how temporal variation in dominant native and non‐native plants impacted the abundance and richness of other plants in the recipient community. Non‐native plants reached higher abundances than natives and had greater per‐capita effects. The abundance–impact relationship between plant abundance and richness was nonlinear. Compared with increasing native abundance, increasing non‐native abundance was associated with steeper declines in richness because of greater per‐capita effects and nonlinearities in the abundance–impact relationship. Our study supports eco‐evolutionary novelty of non‐natives as a driver of their outsized impacts on communities. 相似文献