Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen,a critically endangered Asian salmonid

For field ecologists, detecting a target species in the wild is a severe bottleneck to understanding its distribution and population status. Recently, environmental DNA (eDNA) techniques have been developed as a noninvasive monitoring tool for aquatic organisms. While applications of eDNA techniques for biomass estimation have been proposed, little is known about an applicable size range of the organisms, which might affect relationships between biomass and eDNA concentration. Here, we investigated eDNA from Sakhalin taimen (Parahucho perryi), a giant salmonid species of northern Japan. This species is critically endangered and difficult to detect in the wild by conventional sampling methods. Using quantitative real-time PCR, we tested correlations between eDNA concentration and fish density using fish with a wide range of ages and body sizes in aquarium experiments. We found that our new primers and probe were truly species-specific, and that the eDNA concentration was significantly correlated with fish density and body size (p < 0.001). Furthermore, based on our calculation, the eDNA concentrations were rather constant among aquaria with fish in different age and size groups when their total weight was adjusted. These results suggest that eDNA concentrations can be an indicator of biomass of Sakhalin taimen, although further research is needed for its application in natural environments.     

Performance of eDNA assays to detect and quantify an elusive benthic fish in upland streams

The sensitivity and specificity of eDNA-based monitoring, coupled with its potential utility to estimate population density or biomass, makes it a useful tool in invasive species management. In this study, we investigated the potential of the eDNA method to improve the detection of the elusive invasive fish, oriental weatherloach (Misgurnus anguillicaudatus), in a river system where a density gradient of the species occurs. We compared detection rates between eDNA and conventional monitoring methods and examined the relationship between eDNA and abundance in a flowing environment. The eDNA method had a higher site detection rate than conventional methods (63 vs. 38%). Weatherloach eDNA was detected at all sites where the fish has been previously caught and none of the sites where the species has not been caught for the past 7 years. There was an increasing density trend going downstream based on long-term conventional monitoring, but the eDNA concentration in water samples reflected this trend only in a continuous section of the river where impoundments were absent. We did not find a positive relationship between eDNA concentration and contemporary abundance estimates in our study area. A high eDNA concentration was recorded at a site (DVC) which was designated a low density site based on long-term catch data. This discrepancy was a likely result of physical habitat characteristics which influenced the efficiency of the conventional methods used. This study highlighted the challenges of inferring density from eDNA data in flowing water because habitat features may confound results, necessitating careful consideration for results to be useful to management.     

Modeling the potential for managing invasive common carp in temperate lakes by targeting their winter aggregations

Common carp (Cyprinus carpio) is one of world’s most invasive fish and managers have long searched for practical control strategies for this species. In temperate systems, common carp forms large winter aggregations that can be located with telemetry and removed with seine nets. This has been viewed as an excellent management possibility, but its success has been mixed. Using a modeling approach, we demonstrate that the usefulness of winter seining in controlling common carp in temperate North American lakes depends on whether carp populations are driven by one of two distinct recruitment dynamics. In lakes where carp can easily recruit within systems from which they are being removed, such as within productive lakes with poor communities of micropredators, winter seining is unlikely to be effective. Even very high removal rates (90 % adults annually) were not sufficient to reach management goal (biomass <100 kg/ha) in such systems. However, in regions with strong predatory communities where carp can recruit only in outlying, seasonally unstable marshes, removal rates as low as 30 % annually or 50 % every other year were able to reduce carp biomass below the management threshold. Such removal rates are achievable as they fall within the range of empirically measured values. Because many carp populations are driven by external recruitment dynamics, strategically conducted winter removal could be used to control this species in a large number of systems across temperate North America and elsewhere.     

Towards the conservation of a critically endangered species, <Emphasis Type="Italic">Aphanius farsicus</Emphasis>: embryogenesis and development

Human-induced disturbance or anthropogenic activities, natural disturbance and also limited distribution, have forced Aphanius farsicus populations to the edge of extinction, during the past few years. As knowledge of fish ontogeny is fundamental for accurate stock assessment, and reproductive potential determination, thus for future conservation and management of the critically endangered species, we describe the first detailed normal embryonic development of this cyprinodontid fish from fertilization to post-hatching. Aphanius farsicus spontaneously spawned at 24°C. The newly-laid eggs were hyaline and spherical in shape (1.40 ± 0.02 mm, n = 11), sticky and full of egg yolk (telolecithal/macrolecithal) with oil droplets. We documented the main developmental stages at 24°C to zygote (0 h), cleavage (2 h), blastula (2 h), gastrula (17 h), segmentation, (34 h), pharyngula (100 h) and hatching (162 h).     

Effects of herbaceous plant functional groups on the dynamics and structure of an alpine lichen heath: the results of a removal experiment

Alpine lichen heaths are polydominant, low-productive communities where lichens and, at some localities, the dwarf shrub Vaccinium vitis-idaea prevail. To analyse the role of herbaceous dominants in the structure of alpine heaths, we established a removal experiment. We tested (1) whether dominant graminoids and forbs differ in their effects on species richness, phytomass, and abundance of individual species; and (2) which remaining species are able to replace the removed dominants. Permanent plots were established in 1996 in the Teberda Reserve (the Northwestern Caucasus, Russia) at 2750 m a.s.l. with four treatments: (1) control, (2) forb removal, (3) graminoid removal, (4) graminoid and forb removal. Target species were clipped every year to avoid regrowth. We counted the shoot numbers of all vascular plants yearly from 1996 to 2009. In 2010, we harvested the aboveground phytomass. We used mixed-effects models to assess the responses of the remaining species and phytomass fractions to the removal. The biomass of the removed dominants was almost compensated for by the remaining species, but due to diffuse competition none of the subordinate species became a new dominant. Graminoid removal reduced community weighted mean leaf dry matter content and litter accumulation. Species number per plot completely recovered after graminoid, not forb removal. Shoot numbers of Antennaria dioica, Arenaria lychnidea, Campanula tridentata, Ranunculus oreophilus, and Trifolium polyphyllum showed positive responses to graminoid removal. Anemone speciosa shoot numbers decreased after graminoid removal. In alpine heath, graminoid dominants contribute more to community structure than forb dominants.     

Early detection of a highly invasive bivalve based on environmental DNA (eDNA)

Management of non-indigenous invasive species (NIS) is challenging owing in part to limitations of early detection and identification. The advent of environmental DNA (eDNA) techniques provides an efficient way to detect NIS when their abundance is extremely low. However, eDNA-based methods often suffer from uncertain detection sensitivity, which requires detailed testing before applying these methods in the field. Here we developed an eDNA tool for early detection of the highly invasive golden mussel, Limnoperna fortunei, based on the mitochondrial cytochrome c oxidase subunit I gene (COI). Further, we tested technical issues, including sampling strategy and detection sensitivity, based on a laboratory experiment. We then applied the method to field samples collected from water bodies in China where this mussel has or is expected to colonize. Results showed that the detection limit varied extensively among our newly developed primer pairs, ranging from 4 × 10^?2 to 4 × 10^?6 ng of total genomic DNA. Laboratory detection was affected by the availability of eDNA (i.e., both mussel abundance and incubation time). Detection capacity was higher in laboratory samples containing re-suspended matter from the bottom layer versus that collected from the surface. Among 25 field sites, detection was 100% at sites with high mussel abundance and as low as 40% at sites with low abundance when tested using our most sensitive primer pair. Early detection of NIS present at low abundance in nature requires not only sensitive primers, but also an optimized sampling strategy to reduce the occurrence of false negatives. Careful selection and detailed testing of primer pairs ensures effective eDNA-based species detection in surveillance and management programs.     

Adaptations in phytoplankton life strategies to imposed change in a shallow urban tropical eutrophic reservoir,Garças Reservoir,over 8 years

This study aimed at evaluating the phytoplankton adaptive strategies of phytoplankton in a shallow urban eutrophic tropical reservoir, Garças Reservoir, over temporal and vertical scales. Samples were taken monthly for eight consecutive years (1997–2004) at a fixed set of depths in the water column. At the beginning, the reservoir was eutrophic with 20% of its surface covered by water hyacinth Eichhornia crassipes (phase I). Then, in phase II, water hyacinth grew to cover up to 40–70% of the surface. In phase III it was mechanically removed. After macrophyte removal the limnology changed, drastically. This removal modified nutrient dynamics, drastically reduced water transparency, and increased both primary production and phytoplankton biomass, the latter impeding light penetration. Phytoplankton life strategies during water hyacinth dominance (phase II) responded promptly to this environmental disturbance in conditions of low dissolved oxygen (DO) and soluble reactive phosphorus (SRP) and high free CO₂ values. After macrophyte removal, a permanent cyanobacterial monoculture was established. Phase I was dominated basically by Sphaerocavum brasiliense, mainly during the stratified months, represented by non-flagellate colonies, the M functional group, S-strategists, and greater biomass of species with high maximal axial linear dimension (MLD) and cell volumes. Phase II was dominated by Cryptomonas curvata, C. erosa, C. marssonii, Trachelomonas sculpta, T. volvocinopsis, T. kelloggii, T. hispida, Peridinium spp., Aphanocapsa spp., and Aphanothece spp., and was represented by unicellular flagellate species, Y, W2, K, L_O functional groups, and C-strategists, greater biomass of species with intermediate MLD and cell volumes. Phase III was dominated by Microcystis aeruginosa, M. panniformis, Cylindrospermopsis raciborskii, Planktothrix agardhii, and Aphanizomenon gracile, represented by non-flagellate colonies, M, S, H1, S functional groups, and S and R-strategists, greater biomass of species with high MLD and cell volumes (>50 μm and >10⁴ μm³, respectively).     

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

Environmental DNA (eDNA) promises to ease noninvasive quantification of fish biomass or abundance, but its integration within conservation and fisheries management is currently limited by a lack of understanding of the influence of eDNA collection method and environmental conditions on eDNA concentrations in water samples. Water temperature is known to influence the metabolism of fish and consequently could strongly affect eDNA release rate. As water temperature varies in temperate regions (both seasonally and geographically), the unknown effect of water temperature on eDNA concentrations poses practical limitations on quantifying fish populations using eDNA from water samples. This study aimed to clarify how water temperature and the eDNA capture method alter the relationships between eDNA concentration and fish abundance/biomass. Water samples (1 L) were collected from 30 aquaria including triplicate of 0, 5, 10, 15 and 20 Brook Charr specimens at two different temperatures (7 °C and 14 °C). Water samples were filtered with five different types of filters. The eDNA concentration obtained by quantitative PCR (qPCR) varied significantly with fish abundance and biomass and types of filters (mixed‐design ANOVA, P < 0.001). Results also show that fish released more eDNA in warm water than in cold water and that eDNA concentration better reflects fish abundance/biomass at high temperature. From a technical standpoint, higher levels of eDNA were captured with glass fibre (GF) filters than with mixed cellulose ester (MCE) filters and support the importance of adequate filters to quantify fish abundance based on the eDNA method. This study supports the importance of including water temperature in fish abundance/biomass prediction models based on eDNA.     

Temperature-induced changes in treatment efficiency and microbial structure of aerobic granules treating landfill leachate

This paper investigates the effect of temperature on nitrogen and carbon removal by aerobic granules from landfill leachate with a high ammonium concentration and low concentration of biodegradable organics. The study was conducted in three stages; firstly the operating temperature of the batch reactor with aerobic granules was maintained at 29 °C, then at 25 °C, and finally at 20 °C. It was found that a gradual decrease in operational temperature allowed the nitrogen-converting community in the granules to acclimate, ensuring efficient nitrification even at ambient temperature (20 °C). Ammonium was fully removed from leachate regardless of the temperature, but higher operational temperatures resulted in higher ammonium removal rates [up to 44.2 mg/(L h) at 29 °C]. Lowering the operational temperature from 29 to 20 °C decreased nitrite accumulation in the GSBR cycle. The highest efficiency of total nitrogen removal was achieved at 25 °C (36.8 ± 10.9 %). The COD removal efficiency did not exceed 50 %. Granules constituted 77, 80 and 83 % of the biomass at 29, 25 and 20 °C, respectively. Ammonium was oxidized by both aerobic and anaerobic ammonium-oxidizing bacteria. Accumulibacter sp., Thauera sp., cultured Tetrasphaera PAO and Azoarcus–Thauera cluster occurred in granules independent of the temperature. Lower temperatures favored the occurrence of denitrifiers of Zooglea lineage (not Z. resiniphila), bacteria related to Comamonadaceae, Curvibacter sp., Azoarcus cluster, Rhodobacter sp., Roseobacter sp. and Acidovorax spp. At lower temperatures, the increased abundance of denitrifiers compensated for the lowered enzymatic activity of the biomass and ensured that nitrogen removal at 20 °C was similar to that at 25 °C and significantly higher than removal at 29 °C.     

Assemblage-level effects of the introduced peacock hind (<Emphasis Type="Italic">Cephalopholis argus</Emphasis>) on Hawaiian reef fishes

The peacock hind Cephalopholis argus (family Serranidae), locally known as ‘roi’, was introduced from French Polynesia to Hawaii in the mid-twentieth century as a food fish. However, because of its association with ciguatera fish poisoning, it is rarely fished for food. Previous research indicates that roi could have a negative impact on native reef fish assemblages because of their high densities and prey consumption rates. However, it is unclear whether roi add to the cumulative mortality of prey (predation hypothesis), or whether predation is instead compensatory (doomed surplus hypothesis). This study experimentally assessed the effects of roi on reef fish populations through a long-term (5.5 year) predator removal experiment. A Before-After-Control-Impact study design was used to assess changes in fish assemblages following the removal of roi on 1.3 ha of patch reef. Increases in the density of prey-sized fish (<15 cm TL) were observed 18 months after roi removal. However, those effects did not translate into sustained increases in prey. While increases in potential competitors, wrasses (family Labridae), particularly the piscivorous ringtail wrasse Oxycheilinus unifasciatus, were observed on roi-free reefs, the fish assemblage did not diverge substantially in composition. Native reef fish appeared to resist the potential negative impacts of predation by roi, possibly through a refuge in size for some fish families. Management to protect intact fish assemblage size-structure could serve to bolster native resistance to invading species. In considering the threats facing coral reefs, and the possible solutions, roi removal alone will not likely replenish native fishery resources.     

Disentangling the stream community impacts of <Emphasis Type="Italic">Didymosphenia geminata</Emphasis>: How are higher trophic levels affected?

Human activities frequently result in either intentional or unintentional introductions of species to new locations, and freshwater environments worldwide are particularly vulnerable to species invasions. An introduced freshwater diatom, Didymosphenia geminata, was first discovered in New Zealand in 2004 but there was limited research available to predict the drivers of D. geminata biomass and how biomass variability might influence higher trophic levels (e.g. invertebrates and fish). We examined the effect of D. geminata biomass on benthic invertebrates, invertebrate drift and fish communities in 20 rivers in New Zealand with variable hydrology, physical habitat and water chemistry. Variation in D. geminata biomass was best explained by a model that showed D. geminata biomass increased with time since the last flow event exceeding three times the median annual discharge and decreasing concentration of dissolved reactive phosphorus. Analyses of biotic responses showed that high D. geminata biomass did not affect either invertebrate or fish diversity but altered the structure of benthic communities, changed the composition of drifting invertebrate communities and reduced fish biomass by 90 %, particularly trout. A partial least squares path model was used to disentangle both direct and indirect effects of D. geminata on fish communities and showed D. geminata had a significant negative direct effect on fish communities. This is the first study to show how the potential effects of the introduced diatom D. geminata can impact fish communities and has shown that D. geminata impacts fish both directly and indirectly through changes in their invertebrate prey community.     

Estuarine fish behavior around slotted water control structures in a managed salt marsh

Estuaries are composed of multiple interconnected habitat types used by transient fish species during their period of estuarine residency. Structural marsh management restricts habitat connectivity and impedes the movement of fishes among these habitat types by limiting access via water control structures (WCSs) between the managed area and the rest of the estuary. While some general information on fish passage rates is available, species-specific information on passage through WCSs is lacking for salt marsh fishes. We monitored tagged fishes from March 2012 through November 2013 using passive integrated transponder antenna arrays at two identical WCSs in the Calcasieu Lake estuary, Louisiana, USA, to assess the effect of slotted WCSs on fish behavior. A total of 420 individuals of 15 species was tagged and released at the WCSs; of these, 145 individuals representing 11 species were later detected at the WCSs. Five species comprised most (93%) of the detected individuals: Elops saurus (n = 60), Mugil cephalus (n = 43), Sciaenops ocellatus (n = 20), Pogonias cromis (n = 7), and Ariopsis felis (n = 5). Passage rates were low, with most of the observed fishes (n = 80) passing only once through the structures. Other than E. saurus, which was only observed migrating out of the managed marsh, no clear pattern in swimming direction was observed for the other species. Detected species were all present primarily during the summer and fall, however, diel activity at the structures varied by species. The WCSs in our study area appeared to attract and congregate fishes, functioning more like ecological hotspots, rather than simply facilitating fish passage.     

Distribution and diet of demersal Arctic Cod, <Emphasis Type="Italic">Boreogadus saida</Emphasis>, in relation to habitat characteristics in the Canadian Beaufort Sea

Arctic Cod (Boreogadus saida) occur throughout the circumpolar north; however, their distributions at localized scales are not well understood. The seasonal habitat associations and diet preferences across life-history stages of this keystone species are also poorly known, thereby impeding effective regulatory efforts in support of conservation objectives. The distribution of Arctic Cod in the Canadian Beaufort Sea was assessed using bottom trawling in shelf and slope habitats between 20 and 1000 m depths. Highest catch biomasses occurred at 350 and 500 m depth slope stations, coinciding with >0 °C temperatures in the Pacific–Atlantic thermohalocline and Atlantic water mass. Calanus glacialis, Calanus hyperboreus, Themisto libellula, and Themisto abyssorum were identified as key prey species in the diet of Arctic Cod, comprising approximately 86 % of total biomass in guts. Hierarchical cluster analysis with a SIMPROF test identified five statistically significant (p < 0.05) diet groups among gut samples. Arctic Cod shifted from a primarily Calanus diet at shelf stations (<200 m depth) to a Themisto diet in slope habitats (>200 m depth) coinciding with an associated increase in fish standard length with depth. Smaller Arctic Cod fed primarily on Calanus copepods and larger Arctic Cod fed primarily on the larger Themisto species. The habitat and diet associations presented here will inform knowledge of structural and functional relationships in Arctic marine ecosystems, aid in mitigation and conservation efforts, and will enhance our ability to predict the effects of climate change on the local spatial and depth associations of this pivotal marine fish.     

On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation

Environmental DNA (eDNA) analysis is an innovative tool for determining the distribution or abundance of aquatic macroorganisms. However, because eDNA degrades rapidly in water, long delays between sampling and analysis may hinder eDNA quantification. In the present study, we developed a portable filtration system that enables on-site (and on-the-road) filtration of water samples. Degradation rates of eDNA within 6 h were compared using water from an outdoor pond that was subjected to (1) on-site filtration, (2) transportation of water on ice, and (3) transportation of water at ambient temperature. Groups 2 and 3 were filtered in the laboratory 6 h after sampling. The concentration of eDNA was determined as the copy number of the mitochondrial cytochrome b gene of two fish species using real-time polymerase chain reaction. The portable filtration system offers the following benefits: (1) the eDNA concentration is preserved as is at the time of sampling, permitting higher accuracy of eDNA quantification, (2) use of a disposable sealed plastic bag reduces the risk of contamination and ensures on-the-road filtration, (3) time is saved because filtration can be accomplished when driving between sampling sites.     

Stable isotope measurements confirm consumption of submerged macrophytes by macroinvertebrate and fish taxa

Many macrophyte species in lowland streams exhibit signs of grazing and herbivore damage, even though herbivory by aquatic macroinvertebrates and fish is generally considered to be of little importance. In this study, we collected evidence for the hypothesis that herbivory on macrophytes by macroinvertebrates and fish is more widespread than assumed. We measured the dual stable isotope signatures (δ¹³C and δ¹⁵N) of organic matter, epiphyton, submerged macrophytes, macroinvertebrates and fish in a Belgian lowland stream. There was a clear distinction in isotopic signatures of the different basal resources, allowing the use of the SIAR mixing model. These calculations revealed the consumption of macrophyte tissue not only by the phytophagous larvae of Nymphula nitidulata Hufnagel (Lepidoptera: Crambidae), but also by Baetidae nymphs (Ephemeroptera), Orthocladiinae larvae (Diptera: Chironomidae), the crayfish Orconectus limosus Rafinesque (Decapoda: Cambaridae) and the fish Gobio gobio L. (Cypriniformes: Cyprinidae) which are classified as feeding on other resources. Although the potential share of macrophyte biomass in the diet of macroinvertebrates and fish was demonstrated to be up to 49%, this amount is only a small percentage of the total standing macrophyte biomass in a lowland stream. However, the impact of this herbivory may still be substantial because consumption may comprise a significant fraction of the daily primary production. Additionally, small-scale herbivory may still have a negative impact on macrophyte growth and survival, for example through consumption of apical meristems and the increased susceptibility to diseases and toxins if the macrophyte’s epidermis is damaged.     

Morpho-Molecular Characterization of Soil Inhabitant Dermatophytes from Ahvaz,Southwest of Iran,a High Occurrence of <Emphasis Type="Italic">Microsporum fulvum</Emphasis>

Occurrence and diversity of dermatophyte mycoflora in 298 soil samples from Ahvaz, Southwest of Iran was investigated by using the hair-baiting technique. The samples were collected during spring (n = 210) and autumn (n = 88) of 2015, and the fungal isolates were identified based on the macro- and micro-morphology of colonies and with further ITS-rDNA RFLP and sequencing. Totally, 60 soil samples (20.1%) were positive for dermatophyte growth whose pH varied from 7.0 to 7.9. The highest (26.6%) and the lowest (14.3%) recovery rates were from the animal resorts and the streets soils samples, respectively. Seasonally, 16.7% of the spring samples and 28.4% of the autumn samples were positive. Based on molecular identification, three species of two genera were identified viz. M. fulvum (n = 57), M. canis (n = 2) and zoophilic Trichophyton interdigitale (n = 1). As a specific goal in the study, differentiation of the species in Microsporum gypseum complex was established by measuring the mean length and width of macroconidia in some strains of M. gypseum, M. fulvum and M. incurvatum. Mean size for macroconidia length and width in three species showed that M. gypseum and M. incurvatum can morphologically be differentiated from M. fulvum but not from each other. M. fulvum was the most abundant species isolated from the soils of Ahvaz; however, to comprehensively specify the distribution pattern of geophilic dermatophytes in the soils of this city further investigations are needed. Identification based on micro-morphometric is not effective for species distinction in M. gypseum complex, while molecular procedures based on sequencing of certain DNA regions are the most reliable and applicable strategies for this purpose.     

Estimation of fish biomass using environmental DNA

Environmental DNA (eDNA) from aquatic vertebrates has recently been used to estimate the presence of a species. We hypothesized that fish release DNA into the water at a rate commensurate with their biomass. Thus, the concentration of eDNA of a target species may be used to estimate the species biomass. We developed an eDNA method to estimate the biomass of common carp (Cyprinus carpio L.) using laboratory and field experiments. In the aquarium, the concentration of eDNA changed initially, but reached an equilibrium after 6 days. Temperature had no effect on eDNA concentrations in aquaria. The concentration of eDNA was positively correlated with carp biomass in both aquaria and experimental ponds. We used this method to estimate the biomass and distribution of carp in a natural freshwater lagoon. We demonstrated that the distribution of carp eDNA concentration was explained by water temperature. Our results suggest that biomass data estimated from eDNA concentration reflects the potential distribution of common carp in the natural environment. Measuring eDNA concentration offers a non-invasive, simple, and rapid method for estimating biomass. This method could inform management plans for the conservation of ecosystems.     

Repurposing environmental DNA samples—detecting the western pearlshell (Margaritifera falcata) as a proof of concept

Information on the distribution of multiple species in a common landscape is fundamental to effective conservation and management. However, distribution data are expensive to obtain and often limited to high‐profile species in a system. A recently developed technique, environmental DNA (eDNA) sampling, has been shown to be more sensitive than traditional detection methods for many aquatic species. A second and perhaps underappreciated benefit of eDNA sampling is that a sample originally collected to determine the presence of one species can be re‐analyzed to detect additional taxa without additional field effort. We developed an eDNA assay for the western pearlshell mussel (Margaritifera falcata) and evaluated its effectiveness by analyzing previously collected eDNA samples that were annotated with information including sample location and deposited in a central repository. The eDNA samples were initially collected to determine habitat occupancy by nonbenthic fish species at sites that were in the vicinity of locations recently occupied by western pearlshell. These repurposed eDNA samples produced results congruent with historical western pearlshell surveys and permitted a more precise delineation of the extent of local populations. That a sampling protocol designed to detect fish was also successful for detecting a freshwater mussel suggests that rapidly accumulating collections of eDNA samples can be repurposed to enhance the efficiency and cost‐effectiveness of aquatic biodiversity monitoring.