EFFECTS OF POPULATION AND INDUSTRIALIZATION ON THE DEGRADATION OF BIOMASS AND ITS REGENERATION BY AFFORESTATION: A MATHEMATICAL MODEL

The bio-mass(Food, Fodder and Forestry, etc. ) in a habitat has beencontinuously depleting due to rapid industrialization and over-population leadingto various kinds of undesirable effects on our environment and on land masscausing deep concern to planners and management experts. In this paper, therefore, a mathematical model for degradation of bio-massis presented to study the effects of industrialization and associated growth ofpopulation, It is shown that with the increase in the levels of these factors,the bio-mass resource may not last long. It has also been pointed out mathematicallythat the level of the biomass can be maintained at desired equilibrium level bya suitable afforestation programme.     

Expression of basic fibroblast growth factor results in the decrease of myostatin mRNA in murine C2C12 myoblasts

During the development and regeneration of skeletal muscle,many growth factors,such asbasic fibroblast growth factor (bFGF,FGF-2) and myostatin,have been shown to play regulating roles.bFGF contributes to promote proliferation and to inhibit differentiation of skeletal muscle,whereas myostatinplays a series of contrasting roles.In order to elucidate whether the expression of bFGF has any relationshipwith the expression of myostatin in skeletal muscle cells,we constructed a eukaryotic expression vector forthe expression of exogenous bFGF in murine C2C12 myoblasts.Quantitative RT-PCR assays indicated thatwith the increase of the expression of exogenous bFGF gene,the expression of endogenous myostatin genewas suppressed at mRNA level and protein level.     

A new species of Lathyrus L.(Fabaceae) from Turkey

Lathyrus L.belongs to the tribe Fabeae within the Fabaceae (Leguminosae).It contains more than 200 taxa and has an almost worldwide distribution (Allkin et al.,1986).Tutin & Heywood ( 1981)reported,in Flora Europaea,that 54 species are known from the area.In Flora of Turkey,Davis (1970) stated that the genus is represented by 67 taxa at the species,subspecies,and variety level.However,the number of taxa known from Turkey has since increased to 75 (Davis et al.,1988;Günes & (O)zhatay,2000;Gen(c) & Sahin,2008;Gen(c),2009).     

The role of nitric oxide in cancer

Nitric oxide (NO) is a pleiotropic regulator, critical to numerous biological processes, including va-sodilatation, neurotransmission and macrophage-mediated immunity. The family of nitric oxide synthases (NOS) comprises inducible NOS (iNOS), endothelial NOS (eNOS), and neuronal NOS (nNOS). Interest-ingly, various studies have shown that all three isoforms can be involved in promoting or inhibiting the etiology of cancer. NOS activity has been detected in tumour cells of various histogenetic origins and has been associated with tumour grade, proliferation rate and expression of important signaling components associated with cancer development such as the oestrogen receptor. It appears that high levels of NOS expression (for example, generated by activated macrophages) may be cytostatic or cytotoxic for tumor cells, whereas low level activity can have the opposite effect and promote tumour growth. Paradoxically therefore, NO (and related reactive nitrogen species) may have both genotoxic and angiogenic properties.Increased NO-generation in a cell may select mutant p53 cells and contribute to tumour angiogenesis by upregulating VEGF. In addition, NO may modulate tumour DNA repair mechanisms by upregulating p53,poly(ADP-ribose) polymerase (PARP) and the DNA-dependent protein kinase (DNA-PK). An understand-ing at the molecular level of the role of NO in cancer will have profound therapeutic implications for the diagnosis and treatment of disease.     

Biomass partitioning and water content relationships at the branch and whole-plant levels and as a function of plant size in Elaeagnus mollis populations in Shanxi, North China

Understanding of the biomass (dry weight) allocation and water relations in populations will provide useful information on the growth patterns and resource-allocation dynamics. By destructive sampling, foliage, branch and root biomass were measured in the endangered shrub Elaeagnus mollis populations growing in Shanxi province, North China. Biomass partitioning and water content relationships were compared at the branch and whole-plant levels, and as a function of basal diameter (plant size). The biomass was mainly distributed in the bigger branches at the branch level, and in the branch wood at the whole-plant level, and branch biomass (but not foliage or root biomass) increases significantly with increasing basal diameter. As a result, branch wood became the major biomass pool, even though considerable biomass was also allocated to the roots. However, the relative water content decreased from the periphery of the crown to the interior of the shrub at the branch level, and from the aboveground to the belowground at the whole-plant level though no significant variation among foliage, branches, and roots. Yet it increased significantly for the whole-plant with increasing basal diameter. The ratio of belowground to aboveground biomass was smaller than 1.0, even as a function of basal diameter. These growth responses indicated a strong adaptation to the shrub’s growing conditions. Biomass was primarily allocated above the ground and the aboveground components grew faster than the belowground one.     

Primary structure and configuration of tea polysaccharide

Polysaccharide is a class of natural macromole-cules of which many species have been found to carry significant biological activities. Although the research on activities of saccharide has been at a lower level in the past comparing to those of proteins and nucleic acids, much progress has been made in recent years because of accelerated activities worldwide[1]. Such progress has been made mostly in areas of structural analysis, and researches on structure-activity relation-ships. The biologic…     

Biomass partitioning and water content relationships at the branch and whole-plant levels and as a function of plant size in Elaeagnus mollis populations in Shanxi, North China

Understanding of the biomass (dry weight) allocation and water relations in populations will provide useful information on the growth patterns and resource-allocation dynamics. By destructive sampling, foliage, branch and root biomass were measured in the endangered shrub Elaeagnus mollis populations growing in Shanxi province, North China. Biomass partitioning and water content relationships were compared at the branch and whole-plant levels, and as a function of basal diameter (plant size). The biomass was mainly distributed in the bigger branches at the branch level, and in the branch wood at the whole-plant level, and branch biomass (but not foliage or root biomass) increases significantly with increasing basal diameter. As a result, branch wood became the major biomass pool, even though considerable biomass was also allocated to the roots. However, the relative water content decreased from the periphery of the crown to the interior of the shrub at the branch level, and from the aboveground to the belowground at the whole-plant level though no significant variation among foliage, branches, and roots. Yet it increased significantly for the whole-plant with increasing basal diameter. The ratio of belowground to aboveground biomass was smaller than 1.0, even as a function of basal diameter. These growth responses indicated a strong adaptation to the shrub’s growing conditions. Biomass was primarily allocated above the ground and the aboveground components grew faster than the belowground one.     

Denaturing Urea Polyacrylamide Gel Electrophoresis (Urea PAGE)

Urea PAGE or denaturing urea polyacrylamide gel electrophoresis employs 6-8 M urea, which denatures secondary DNA or RNA structures and is used for their separation in a polyacrylamide gel matrix based on the molecular weight. Fragments between 2 to 500 bases, with length differences as small as a single nucleotide, can be separated using this method¹. The migration of the sample is dependent on the chosen acrylamide concentration. A higher percentage of polyacrylamide resolves lower molecular weight fragments. The combination of urea and temperatures of 45-55 °C during the gel run allows for the separation of unstructured DNA or RNA molecules.In general this method is required to analyze or purify single stranded DNA or RNA fragments, such as synthesized or labeled oligonucleotides or products from enzymatic cleavage reactions.In this video article we show how to prepare and run the denaturing urea polyacrylamide gels. Technical tips are included, in addition to the original protocol ^1,2.     

Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics

Proteome complexity necessitates protein or peptide separation prior to analysis. We previously described a pipet-tip based peptide micropurification system named StageTips (STop and Go Extraction Tips), which consists of a very small disk of membrane-embedded separation material. Here, we extend this approach in several dimensions by stacking disks containing reversed phase (C(18)) and strong cation exchange (SCX) materials. Multidimensional fractionation as well as desalting, filtration, and concentration prior to mass spectrometry in single or tandem columns is described. C(18)-SCX-C(18) stacked disks significantly improved protein identification by LC-MS/MS for an E. coli protein digest and by MALDI-MS for a 12 standard protein digest. Sequential fractionation based on C(18)- followed by SCX material was also developed. This multidimensional fractionation approach was expanded to parallel sample preparation by incorporating C(18)-SCX-StageTips into a 96-well plate (StagePlate). Fractions were collected into other C(18)-StagePlates and desalted and eluted in parallel to sample well plates or MALDI targets. This approach is suitable for high throughput protein identification for moderately complex, low abundance samples using automated nanoelectrospray-MS/MS or MALDI-MS.     

Simple miniaturized gel system for DNA sequence analysis.

A simple miniaturized gel system suitable for DNA sequencing is described. Small ultrathin polyacrylamide gels are cast, eight or more at a time, using standard microscope slides. Gels, ready to use, can be stored for approximately 2 weeks. Gels are run horizontally in a standard mini-agarose gel apparatus. Typical run times are 6-8 min. A novel sample loading system permits volumes of standard sequencing reactions as small as 0.1 microl to be analyzed. Sequencing ladders were visualized using 35S-labeled DNA by autoradiography and by colorimetric detection. Band resolution compares favorably with that of large gels. The methods introduced here serve as a step toward the miniaturization of DNA sequencing and are amenable to automated sample loading and detection.     

Isolation of messenger RNA coding for eggshell protein of the DNA-eliminating nematode Ascaris lumbricoides

Poly(A)-containing RNA from polyploid uterine epithelial cells of Ascaris lumbricoides has been isolated by poly(U)-Sepharose chromatography. The bulk of poly(A)-containing RNA migrates as 18-S RNA in formamide/polyacrylamide gels. In a cell-free wheat germ system, this RNA directs the synthesis of a polypeptide with identical migration behavior in dodecylsulphate/urea/polyacrylamide gels as the polypeptide isolated from the proteinaceous eggshell. The two proteins reveal almost identical peptide patterns in fingerprint analysis. The authentic eggshell protein has been identified as a glycoprotein with a molecular weight of about 10000, as determined by dodecylsulphate/polyacrylamide gel electrophoresis. The apparent discrepancy between mRNA length and the required coding length for the protein is discussed.     

Electrophoretic separation of large proteoglycans in large-pore polyacrylamide gradient gels (1.32-10.0% T) and a one-step procedure for simultaneous staining of proteins and proteoglycans.

A procedure is described for the preparation of 1.32-10% polyacrylamide gradient gels. Loose polyacrylamide gel on the top side of the gradient was stabilized with a layer of 0.4% agarose gel which also formed sample wells. The upper limit of separation achieved in these gels was estimated to be approximately 2 X 10(6) using globular protein standards. However, large aggregating proteoglycans from cartilage which have a molecular weight range of 1-4 X 10(6) penetrate and separate in these gels. A simple one-step procedure is also described for simultaneous staining of proteins and large proteoglycans in polyacrylamide gels.     

Microarray compound screening (microARCS) to identify inhibitors of HIV integrase

A novel high-throughput strand transfer assay has been developed, using Microarray Compound Screening (microARCS) technology, to identify inhibitors of human immunodeficiency virus (HIV) integrase. This technology utilizes agarose matrices to introduce a majority of the reagents throughout the assay. Integration of biotinylated donor DNA with fluorescein isothiocyanate (FITC)-labeled target DNA occurs on a SAM membrane in the presence of integrase. An anti-FITC antibody conjugated to alkaline phosphatase (AP) was used to do an enzyme-linked immunosorbent assay with the SAM. An agarose gel containing AttoPhos, a substrate of AP, was used for detection of the integrase reactions on the SAM. For detection, the AttoPhos gel was separated from the SAM after incubation and then the gel was imaged using an Eagle Eye II closed-circuit device camera system. Potential integrase inhibitors appear as dark spots on the gel image. A library of approximately 250,000 compounds was screened using this HIV integrase strand transfer assay in microARCS format. Compounds from different structural classes were identified in this assay as novel integrase inhibitors.     

A Versatile Composite Gel Column for the Electrophoretic Separation of Ribonucleic Acid Molecules

A composite gel column system containing 2.4% acry I amide, 0.14% N,n¹-methylene bisacrylamide, 0.6% agarose and 15% glycerol as a component has been developed for the electrophoretlc separation of all kinds of ribonucleic acid molecules extracted from eucaryotlc cells. The separations achieved In this composite gel are due to the sieving of RNA molecules of various sizes with similar charge. As a result of the addition of glycerol the polymerization time of the composite gel is extended and the gel has increased mechanical stability. These stable gels can be sliced at room temperature for such procedures as measuring radioactivity or extraction. Their suitability for staining and absorbance scanning is not altered.     

Simultaneous loading of 200 sample lanes for DNA sequencing on vertical and horizontal, standard and ultrathin gels.

We have developed a simple and efficient technique for automated parallel loading of >/=200 lanes on a 30 cm-wide gel in automated DNA sequencing, using porous filter materials and an associated manual or robotic system. The samples are loaded onto the teeth of a comb made of the porous material. The comb, with samples, is inserted directly above the straight edge of the polymerized gel. The samples are driven from the comb into the gel by the applied electrical field. A particularly advantageous aspect of this method is the elimination of the thin gel walls separating the sample wells in the standard gel loading technique. The time for sample loading is significantly reduced to a few minutes. The loading technique is applicable to horizontal or vertical systems, with standard or ultrathin gels.     

Sample prefractionation with Sephadex isoelectric focusing prior to narrow pH range two-dimensional gels

Due to their heterogeneity and huge differences in abundance, the detection and identification of all proteins expressed in eukaryotic cells and tissues is a major challenge in proteome analysis. Currently the most promising approaches are sample prefractionation procedures prior to narrow pH range two-dimensional gel electrophoresis (IPG-Dalt) to reduce the complexity of the sample and to enrich for low abundance proteins. We recently developed a simple, cheap and rapid sample prefractionation procedure based on flat-bed isoelectric focusing (IEF) in granulated gels. Complex sample mixtures are prefractionated in Sephadex gels containing urea, zwitterionic detergents, dithiothreitol and carrier ampholytes. After IEF, up to ten gel fractions alongside the pH gradient are removed with a spatula and directly applied onto the surface of the corresponding narrow pH range immobilized pH gradient (IPG) strips as first dimension of two-dimensional (2-D) gel electrophoresis. The major advantages of this technology are the highly efficient electrophoretic transfer of the prefractionated proteins from the Sephadex IEF fraction into the IPG strip without any sample dilution, and the full compatibility with subsequent IPG-IEF, since the prefactionated samples are not eluted, concentrated or desalted, nor does the amount of the carrier ampholytes in the Sephadex fraction interfere with subsequent IPG-IEF. Prefractionation allows loading of higher protein amounts within the separation range applied to 2-D gels and facilitates the detection of less abundant proteins. Also, this system is highly flexibile, since it allows small scale and large scale runs, and separation of different samples at the same time. In the current study, this technology has been successfully applied for prefractionation of mouse liver proteins prior to narrow pH range IPG-Dalt.