Tent selection, roosting ecology and social organization of the tent-making bat, Ectophylla alba, in Costa Rica

Small groups of the tent-making bat, Ectophylla alba , were found roosting in Heliconia (Musaceae) tents in old secondary-growth forest in north-eastern Costa Rica. The choice of specific Heliconia leaves for tents was predicted on the basis of leaf size and age. Additionally, tents in shrubs, saplings and epiphytic plants were found scattered throughout both primary- and secondary-growth forest. Tents were used either as night feeding roosts or as day-roosts for as long as 45 days. Groups of bats remained together when they moved to newly cut tents. After parturition, tent groups divided into all-male colonies and maternity colonies with females, non-volant young and a single adult male.     

The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease

Trichomaglin is a protein isolated from root tuber of the plant Maganlin (Trichosanthes Lepiniate, Cucurbitaceae). The crystal structure of trichomaglin has been determined by multiple-isomorphous replacement and refined at 2.2 A resolution. The X-ray sequence was established, based on electron density combined with the experimentally determined N-terminal sequence, and the sequence information derived from mass spectroscopic analysis. X-ray sequence-based homolog search and the three-dimensional structure reveal that trichomaglin is a novel S-like RNase, which was confirmed by biological assay. Trichomaglin molecule contains an additional beta sheet in the HV(b) region, compared with the known plant RNase structures. Fourteen cystein residues form seven disulfide bridges, more than those in the other known structures of S- and S-like RNases. His43 and His105 are expected to be the catalytic acid and base, respectively. Four hydrosulfate ions are bound in the active site pocket, three of them mimicking the substrate binding sites.     

Population genetic structure of serotine bats (Eptesicus serotinus) across Europe and implications for the potential spread of bat rabies (European bat lyssavirus EBLV-1)

Understanding of the movements of species at multiple scales is essential to appreciate patterns of population connectivity and in some cases, the potential for pathogen transmission. The serotine bat (Eptesicus serotinus) is a common and widely distributed species in Europe where it frequently harbours European bat lyssavirus type 1 (EBLV-1), a virus causing rabies and transmissible to humans. In the United Kingdom, it is rare, with a distribution restricted to south of the country and so far the virus has never been found there. We investigated the genetic structure and gene flow of E. serotinus across the England and continental Europe. Greater genetic structuring was found in England compared with continental Europe. Nuclear data suggest a single population on the continent, although further work with more intensive sampling is required to confirm this, while mitochondrial sequences indicate an east–west substructure. In contrast, three distinct populations were found in England using microsatellite markers, and mitochondrial diversity was very low. Evidence of nuclear admixture indicated strong male-mediated gene flow among populations. Differences in connectivity could contribute to the high viral prevalence on the continent in contrast with the United Kingdom. Although the English Channel was previously thought to restrict gene flow, our data indicate relatively frequent movement from the continent to England highlighting the potential for movement of EBLV-1 into the United Kingdom.     

Global patterns reveal strong population structure in Haemonchus contortus, a nematode parasite of domesticated ruminants

We have examined the global population genetic structure of Haemonchus contortus. The genetic variability was studied using both amplified fragment length polymorphism (AFLP) and nad4 sequences of the mitochondrial genome. To examine the performance and information content of the two different marker systems, comparative assessment of population genetic diversity was undertaken in 19 isolates of H. contortus, a parasitic nematode of small ruminants. A total of 150 individual adult worms representing 14 countries from all inhabited continents were analysed. Altogether 1,429 informative AFLP markers were generated using four different primer combinations. Also, the genetic variation was high, which agrees with results from previous AFLP studies of nematode parasites of livestock. The genetic structure was high, indicating limited gene flow between the different isolates and populations from each continent mostly formed monophyletic groups in the phylogenetic analysis. However, for isolates representing Australia, Greece and one laboratory strain that originated from South Africa (WRS), there was no clear genetic relationship between the isolates and the distance between their geographical origins. Basically the same pattern was observed for the mitochondrial marker, although the phylogenetic analysis was less resolved than for AFLP. In contrast with previous findings on the population genetic structure of H. contortus, the calculation of population structure gave high values (Nst=0.59). The strong structure was present also for the four Swedish isolates (Nst=0.16) representing a small geographical area.     

Acoustic characterization of bats from Malta: setting a baseline for monitoring and conservation of bat populations

Bioacoustic research has made several advancements in developing systems to record extensive acoustic data and classify bat echolocation calls to species level using automated classifiers. These systems are useful as echolocation calls give valuable information on bat behaviour and ecology and hence are widely used for research and conservation of bat populations. Despite the challenges associated with automated classifiers, due to the interspecific differences in call characteristics of bat species found in the Maltese Islands, the use of a quantitative and automated approach is investigated. The sound analysis pipeline involved the use of an algorithm to clean sound files from background noise and measure temporal and spectral parameters of bat echolocation calls. These parameters were then fed to a trained and validated artificial neural network using a bat call library built from reference bat calls from Malta. The automatic classifier achieved an overall correct classification rate of 98%. This high correct classification rate for reliable species identification may have benefitted from the absence of typically problematic species, such as species in the genus Myotis, in the analyses. This study’s results pave the way for efficient and reliable bat acoustic surveys in Malta in aid of necessary monitoring and conservation by providing an updated bat species list and their echolocation characteristics.     

No consistent association between changes in genetic diversity and adaptive responses of Australian acacias in novel ranges

Common garden studies comparing trait differences of exotic species between native and introduced ranges rarely incorporate an analysis of genetic variation, but simply infer that trait shifts between ranges are genetically determined. We compared four growth-related traits (total biomass, relative growth rate RGR, specific leaf area SLA, and root to shoot ratio R:S) of five invasive Fabaceae species (Acacia cyclops, A. longifolia, A. melanoxylon, A. saligna, Paraserianthes lophantha), grown in a common garden experiment using seeds from introduced and native ranges across Australia. Chloroplast microsatellite loci were used to compare genetic diversity of native and introduced populations to determine standing genetic diversity and infer introduction history. We asked whether shifts in traits associated with faster growth due to enemy release in the introduced range were associated with levels of genetic diversity associated with introduction history. We found differences in traits between ranges, although these traits varied among the species. Compared to native-range populations, introduced-range Acacia longifolia had greater biomass and larger SLA; A. cyclops had greater RGR; and A. melanoxylon displayed lower R:S. Genetic diversity in the introduced range was lower for one of those species, A. longifolia, and two others that did not show differences in traits, A. saligna and P. lophantha. Diversity was higher in the introduced range for A. melanoxylon and did not differ among ranges for A. cyclops. These patterns of genetic diversity suggest that a genetic bottleneck may have occurred following the introduction of A. longifolia, A. saligna and P. lophantha. In contrast greater or comparable genetic diversity in the introduced range for A. melanoxylon and A. cyclops suggests introductions from multiple sources. This study has shown that a reduction in genetic diversity in the introduced range is not necessarily associated with a reduced capacity for adaptive responses or invasion potential in the novel range.     

Crystal structure and biochemical analyses reveal Beclin 1 as a novel membrane binding protein

The Beclin 1 gene is a haplo-insufficient tumor suppressor and plays anessential role in autophagy. However, the molecular mechanism by which Beclin 1functions remains largely unknown. Here we report the crystal structure of theevolutionarily conserved domain (ECD) of Beclin 1 at 1.6 Åresolution. Beclin 1 ECD exhibits a previously unreported fold, with threestructural repeats arranged symmetrically around a central axis. Beclin 1 ECDdefines a novel class of membrane-binding domain, with a strong preference forlipid membrane enriched with cardiolipin. The tip of a surface loop in Beclin 1ECD, comprising three aromatic amino acids, acts as a hydrophobic finger toassociate with lipid membrane, consequently resulting in the deformation ofmembrane and liposomes. Mutation of these aromatic residues rendered Beclin 1unable to stably associate with lipid membrane in vitro and unable tofully rescue autophagy in Beclin 1-knockdown cells in vivo. Theseobservations form an important framework for deciphering the biologicalfunctions of Beclin 1.     

Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera

Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~ 1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats: Corynorhinus rafinesquii, Lasiurus borealis and Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera. C. rafinesquii, L. borealis and A. lituratus mitochondrial genomes are 16438 bp, 17048 bp and 16709 bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes.     

Intracolonial social distance, signaling modality and association choice in the greater sac-winged bat (Saccopteryx bilineata)

Understanding patterns and motivations for social spacing greatly illuminates the structure and internal dynamics of given groups or social systems. The highly social, polygynous greater sac-winged bat, Saccopteryx bilineata, represents an excellent model for social spacing analysis, since the choice of individual roost-sites within a day-roost constitutes an enduring, often repeated decision about relative proximity to conspecifics. Day-roost colonies consist of one or multiple harem groups, each with several females and a single male. Additionally, non-harem males without females may be present. A social-distance–time-budget metric revealed that harem males, females, and non-harem males differed significantly in their respective spatial associations while roosting. Harem males and females were most closely associated, with harem males located at the center of harems instead of at the borders. Non-harem males associated significantly closer with one another than with harem females that they were trying to access. The signaling modality mediating social interactions depended on the respective social distances between communicating bats. Our results suggest a concentric social organization based around harem males, which may select roost sites in closest possible proximity to females to enhance courtship signal strength. This constitutes an interesting deviation from the normative form of harem maintenance, patrolling borders, in mammals.     

A local nearest-neighbor convex-hull construction of home ranges and utilization distributions

We describe a new method for estimating the area of home ranges and constructing utilization distributions (UDs) from spatial data. We compare our method with bivariate kernel and α-hull methods, using both randomly distributed and highly aggregated data to test the accuracy of area estimates and UD isopleth construction. The data variously contain holes, corners, and corridors linking high use areas. Our method is based on taking the union of the minimum convex polygons (MCP) associated with the k−1 nearest neighbors of each point in the data and, as such, has one free parameter k. We propose a "minimum spurious hole covering" (MSHC) rule for selecting k and interpret its application in terms of type I and type II statistical errors. Our MSHC rule provides estimates within 12% of true area values for all 5 data sets, while kernel methods are worse in all cases: in one case overestimating area by a factor of 10 and in another case underestimating area by a factor of 50. Our method also constructs much better estimates for the density isopleths of the UDs than kernel methods. The α-hull method does not lead directly to the construction of isopleths and also does not always include all points in the constructed home range. Finally we demonstrate that kernel methods, unlike our method and the α-hull method, does not converges to the true area represented by the data as the number of data points increase.     

Passive acoustic telemetry reveals highly variable home range and movement patterns among unicornfish within a marine reserve

Marine reserves are the primary management tool for Guam’s reef fish fishery. While a build-up of fish biomass has occurred inside reserve boundaries, it is unknown whether reserve size matches the scale of movement of target species. Using passive acoustic telemetry, we quantified movement patterns and home range size of two heavily exploited unicornfish Naso unicornis and Naso lituratus. Fifteen fish (N. unicornis: n = 7; N. lituratus: n = 4 male, n = 4 female) were fitted with internal acoustic tags and tracked continuously over four months within a remote acoustic receiver array located in a decade-old marine reserve. This approach provided robust estimates of unicornfish movement patterns and home range size. The mean home range of 3.2 ha for N. unicornis was almost ten times larger than that previously recorded from a three-week tracking study of the species in Hawaii. While N. lituratus were smaller in body size, their mean home range (6.8 ha) was over twice that of N. unicornis. Both species displayed strong site fidelity, particularly during nocturnal and crepuscular periods. Although there was some overlap, individual movement patterns and home range size were highly variable within species and between sexes. N. unicornis home range increased with body size, and only the three largest fish home ranges extended into the deeper outer reef slope beyond the shallow reef flat. Both Naso species favoured habitat dominated by corals. Some individuals made predictable daily crepuscular migrations between different locations or habitat types. There was no evidence of significant spillover from the marine reserve into adjacent fished areas. Strong site fidelity coupled with negligible spillover suggests that small-scale reserves, with natural habitat boundaries to emigration, are effective in protecting localized unicornfish populations.     

Contrasting patterns of genetic diversity and spatial structure in an invasive symbiont-host association

Do host invaders and their associated symbiont co-invaders have different genetic responses to the same invasion process? To answer this question, we compared genetic patterns of native and exotic populations of an invasive symbiont-host association. This is an approach applied by very few studies, of which most are based on parasites with complex life cycles. We used the mitochondrial genetic marker cytochrome oxidase subunit I (COI) to investigate a non-parasitic freshwater ectosymbiont with direct life-cycle, low host specificity and well-documented invasion history. The study system was the crayfish Procambarus clarkii and its commensal ostracod Ankylocythere sinuosa, sampled in native (N American) and exotic (European) ranges. Results of analyses indicated: (1) higher genetic diversity in the symbiont than its host; (2) genetic diversity loss in the exotic range for both species, but less pronounced in the symbiont; (3) native populations genetically structured in space, with stronger patterns in the symbiont and (4) loss of spatial genetic structure in the exotic range in both species. The combination of historical, demographic and genetic data supports a higher genetic diversity of source populations and a higher propagule size that allowed the symbiont to overcome founder effects better than its host co-invader. Thus, the symbiont might be endowed with a higher adaptive potential to new hosts or off-host environmental pressures expected in the invasive range. We highlight the usefulness of this relatively unexplored kind of symbiont-host systems in the invasion context to test important ecological and evolutionary questions.     

Cloning and expression of a calcium-activated chloride channel reveal a novel protein candidate

Purkinje neurons fire spontaneous action potentials at ~50 spikes/sec and generate more than 100 spikes/sec during cerebellum-mediated behaviors. Many voltage-gated channels, including Ca channels, can inactivate and/or facilitate with repeated stimulation, raising the question of how these channels respond to regular, rapid trains of depolarizations. To test whether Ca currents are modulated during firing, we recorded voltage-clamped Ca currents, predominantly carried by P-type Ca channels, from acutely dissociated mouse Purkinje neurons at 30-33{degree sign}C (1 mM Ca). With 0.5 mM intracellular EGTA, 1-second trains of either spontaneous action potential waveforms or brief depolarizing steps at 50 Hz evoked Ca tail currents that were stable, remaining within 5% of the first tail current throughout the train. Higher frequency trains (100 and 200 Hz) elicited a maximal inactivation of     

Solution structure and base perturbation studies reveal a novel mode of alkylated base recognition by 3-methyladenine DNA glycosylase I

The specific recognition mechanisms of DNA repair glycosylases that remove cationic alkylpurine bases in DNA are not well understood partly due to the absence of structures of these enzymes with their cognate bases. Here we report the solution structure of 3-methyladenine DNA glycosylase I (TAG) in complex with its 3-methyladenine (3-MeA) cognate base, and we have used chemical perturbation of the base in combination with mutagenesis of the enzyme to evaluate the role of hydrogen bonding and pi-cation interactions in alkylated base recognition by this DNA repair enzyme. We find that TAG uses hydrogen bonding with heteroatoms on the base, van der Waals interactions with the 3-Me group, and conventional pi-pi stacking with a conserved Trp side chain to selectively bind neutral 3-MeA over the cationic form of the base. Discrimination against binding of the normal base adenine is derived from direct sensing of the 3-methyl group, leading to an induced-fit conformational change that engulfs the base in a box defined by five aromatic side chains. These findings indicate that base specific recognition by TAG does not involve strong pi-cation interactions, and suggest a novel mechanism for alkylated base recognition and removal.     

Spider monkey home ranges: A comparison of radio telemetry and direct observation

The ranging patterns of two male and five female spider monkeys (Ateles geoffroyi) were studied with the use of radio telemetry in Santa Rosa National Park, Costa Rica. The average size of a spider monkey home range was 62.4 hectares; however, range size varied with sex, and, for females, with the presence of a dependent infant. The probability of encountering a radio-collared spider monkey in a three-hour search using radio telemetry (0.91) was much greater than using a visual search (0.20), and telemetric data resulted in a larger estimate of mean home range size than did observational data, when all subjects were compared. However, the difference appeared to be owing to the presence of male ranges in the telemetric, but not the observational, data. When the size of home ranges derived from radio-tracking data for adult females was compared to size of ranges for adult females derived from observations, the results were not significantly different. Adult males had larger home ranges than adult females, thus lending support to the hypothesis that males have adapted to the dispersion of females by occupying a large home range that overlaps the ranges of several adult females. The smallest home ranges were occupied by low-weight females with dependent infants, perhaps reflecting social and energetic constraints.