Influence of roundup herbicide on the activities of peptidases in the intestines of various fish species

It has been revealed that, as a rule, Roundup herbicide inhibits activities of peptidases in the intestine mucosa and chyme in various fish species, both benthivorous (common carp Cyprinus carpio, silver bream Blicca bjoerkna, roach Rutilus rutilus, and crucian carp Carassius carassius) and piscivorous (perch Perca fluviatilis, pike Esox lucius, and sander Sander lucioperca). The tolerance of peptidases to the herbicide is species-specific. The magnitude and vector of the effects of Roundup depend on its concentration and localization of an enzyme. In the mucosa, the enzymes of common carp and pike are most tolerant, while the enzymes of common carp, silver bream, and pike are most tolerant in the chyme.     

Genetic Diversity in Populations of Silver Crucian Carp <Emphasis Type="Italic">Carassius auratus gibelio</Emphasis> (Cyprinidae,Cypriniformes), Depending on the Type of Reproduction and Reservoir Size

This paper presents data on the polymorphism of inter simple sequence repeats of DNA in the silver crucian carp Carassius auratus gibelio in water bodies in the southern part of Western Siberia. The share of polymorphic ISSR-PCR bands in silver crucian carp populations from different lakes varied from 40 to 70%, and Nei’s gene diversity index varied from 0.16 to 0.25. The genetic diversity indices were lower in the populations that were largely represented by females than in bisexual ones. The highest levels of genetic polymorphism were revealed in populations with diploid–triploid complexes. The gene diversity index of the silver crucian carp population is positively correlated with the reservoir size (r = 0.90, p = 0.015; Rs = 0.74, p = 0.036).     

Surface-attached and suspended bacterial community structure as affected by C/N ratios: relationship between bacteria and fish production

Bacteria play crucial roles in the combined system of substrate addition and C/N control, which has been demonstrated to improve aquaculture production. However, the complexity of surface-attached bacteria on substrates and suspended bacteria in the water column hamper further application of this system. This study firstly applied this combined system into the culture of grass carp, and then explored the relationship between microbial complexes from surface-attached and suspended bacteria in this system and the production of grass carp. In addition, this study investigated bacterial community structures as affected by four C/N ratios using Illumina sequencing technology. The results demonstrated that the weight gain rate and specific growth rate of grass carp in the CN20 group (C/N ratio 20:1) were the highest (P < 0.05), and dietary supplementation of the microbial complex had positive effects on the growth of grass carp (P < 0.05). Sequencing data revealed that, (1) the proportions of Verrucomicrobiae and Rhodobacter (surface-attached), sediminibacterium (suspended), and emticicia (surface-attached and suspended) were much higher in the CN20 group compared with those in the other groups (P < 0.05); (2) Rhodobacter, Flavobacterium, Acinetobacter, Pseudomonas, Planctomyces, and Cloacibacterium might be important for the microbial colonization on substrates; (3) as the C/N ratio increased, proportions of Hydrogenophaga (surface-attached and suspended), Zoogloea, and Flectobacillus (suspended) increased, but proportions of Bacillus, Clavibacter, and Cellvibro (surface-attached and suspended) decreased. In summary, a combined system of substrate addition and C/N control increased the production of grass carp, and Verrucomicrobiae and Rhodobacter in the surface-attached bacterial community were potential probiotic bacteria that contributed to the enhanced growth of grass carp.     

Population of silver crucian carp <Emphasis Type="Italic">Carassius auratus</Emphasis> (Cypriniformes,Cyprinidae) with “golden” individuals in the pond of the city of Volgograd

In the pond Gornaya Polyana of the city of Volgograd, the population of silver crucian carp Carassius auratus, some individuals of which have coloration similar to that of goldfish, were found. The studied “golden” individuals from this population morphologically do not differ from individuals of the same size from other populations of C. auratus that consist of typically colored individuals. Nevertheless, the total sample of C. auratus from Gornaya Polyana differs from samples of other populations of Volgograd oblast, besides the presence in it of “golden” individuals also, on average, in larger scales. The assumption is made that the population of C. auratus from Gornaya Polyana pond initially represented a naturalized goldfish. After mass dispersal of the Eurasian silver crucian carp C. auratus in the basin of the Lower Volga, hybridization between these two forms likely occurred. It is suggested that, over the territory of the former Soviet Union, several other populations of C. auratus that originated from the goldfish or have an admixture of its genes existed and exist.     

A metabolomics and proteomics study of the <Emphasis Type="Italic">Lactobacillus plantarum</Emphasis> in the grass carp fermentation

Background

Lactobacillus plantarum, a versatile lactic acid-fermenting bacterium, isolated from the traditional pickles in Ningbo of China, was chosen for grass carp fermentation, which could also improve the flavor of grass carp. We here explored the central metabolic pathways of L. plantarum by using metabolomic approach, and further proved the potential for metabolomics combined with proteomics approaches for the basic research on the changes of metabolites and the corresponding fermentation mechanism of L. plantarum fermentation.

Results

This study provides a cellular material footprinting of more than 77 metabolites and 27 proteins in L. plantarum during the grass carp fermentation. Compared to control group, cells displayed higher levels of proteins associated with glycolysis and nucleotide synthesis, whereas increased levels of serine, ornithine, aspartic acid, 2-piperidinecarboxylic acid, and fumarate, along with decreased levels of alanine, glycine, threonine, tryptophan, and lysine.

Conclusions

Our results may provide a deeper understanding of L. plantarum fermentation mechanism based on metabolomics and proteomic analysis and facilitate future investigations into the characterization of L. plantarum during the grass carp fermentation.

     

Size matters: predation of fish eggs and larvae by native and invasive amphipods

Invasive predators can have dramatic impacts on invaded communities. Extreme declines in macroinvertebrate populations often follow killer shrimp (Dikerogammarus villosus) invasions. There are concerns over similar impacts on fish through predation of eggs and larvae, but these remain poorly quantified. We compare the predatory impact of invasive and native amphipods (D. villosus and Gammarus pulex) on fish eggs and larvae (ghost carp Cyprinus carpio and brown trout Salmo trutta) in the laboratory. We use size-matched amphipods, as well as larger D. villosus reflecting natural sizes. We quantify functional responses, and electivity amongst eggs or larvae and alternative food items (invertebrate, plant and decaying leaf). D. villosus, especially large individuals, were more likely than G. pulex to kill trout larvae. However, the magnitude of predation was low (seldom more than one larva killed over 48 h). Trout eggs were very rarely killed. In contrast, carp eggs and larvae were readily killed and consumed by all amphipod groups. Large D. villosus had maximum feeding rates 1.6–2.0 times higher than the smaller amphipods, whose functional responses did not differ. In electivity experiments with carp eggs, large D. villosus consumed the most eggs and the most food in total. However, in experiments with larvae, consumption did not differ between amphipod groups. Overall, our data suggest D. villosus will have a greater predatory impact on fish populations than G. pulex, primarily due to its larger size. Higher invader abundance could amplify this difference. The additional predatory pressure could reduce recruitment into fish populations.     

Development of the olfactory organ in the ontogeny of carps (Cyprinidae)

Morphogenesis of the olfactory organ is followed with a light microscopy method in silver carp Hypophthalmichthys molitrix, common carp Cyprinus carpio, Eurasian minnow Phoxinus phoxinus, shemaya Alburnus chalcoides, zebra danio Danio rerio, and bitterling Rhodeus sericeus amarus. In these fishes with different reproductive ecology, the olfactory organ develops in a similar way, and it is characterized by a similar structure in the representatives of different species of the same body length. Morphological features revealed in different species are not numerous, and they are not associated with the development of main structures of the olfactory organ. However, the interspecific differences can be connected with different developmental rates of these structures. Based on developmental rate of the olfactory organ, the studied species are divided into three groups with (1) accelerated development (the litophils, Eurasian minnow and shemaya); (2) moderate development (a pelagophil, silver carp, and the phitophils, common carp and zebra danio; and (3) retarded development (an ostracophil, bitterling). The differences in the degree of development of the olfactory organ in the species from various ecological groups are particularly evident to the beginning of the juvenile period. The appearance of all main structures of the olfactory organ is completed in the litophils at the onset of the second juvenile step (XVII); that in the pelagophils and phitophils is by the end of this step, that in ostracophils is substantially later (young of the current year), and that in zebra danio is to the beginning of sexual maturation. In the studied species, olfactory organ becomes differentiated/formed at different age and at various morphological states of the progeny, but at similar body size (29–30 mm). Thus, the body length of carps can be regarded as an indicator of a level of morphological development of the olfactory organ.     

Temperature dependent effects of carbon dioxide on avoidance behaviors in bigheaded carps

Effective behavioral deterrents are needed to prevent aquatic invasive species from entering novel ecosystems. One deterrent strategy that shows promise is elevated carbon dioxide (CO₂) concentrations in water which can alter the behavior of freshwater fishes, including invasive bigheaded carps (Hypophthalmichthys spp.). However, few studies have evaluated behavioral responses to elevated CO₂ concentrations at different water temperatures. The objective of this study was to quantify CO₂ concentrations needed to achieve avoidance (voluntary response) and narcosis (involuntary response observed by loss of equilibrium) behaviors in silver carp (H. molitrix) and bighead carp (H. nobilis) at 5, 15, and 25 °C. Overall, silver carp and bighead carp displayed avoidance and narcosis behaviors to CO₂ at each water temperature, however bighead carp responded at higher CO₂ concentrations than silver carp. Behavioral avoidance and narcosis were observed at approximately 40% lower CO₂ concentrations in 5 °C water relative to 25 °C suggesting considerable influence of water temperature on a CO₂ stimulus for both species. Results indicate that fluctuating water temperature (e.g., spatial and temporal variation across management sites) can influence how fish respond to elevated CO₂, and may usefully be considered when applying CO₂ as a behavioral deterrent.     

Molecular evidence for hybridization between invasive <Emphasis Type="Italic">Solidago canadensis</Emphasis> and native <Emphasis Type="Italic">S</Emphasis>. <Emphasis Type="Italic">virgaurea</Emphasis>

Hybridization between alien and native species is biologically very important and could lead to genetic erosion of native taxa. Solidago × niederederi was discovered over a century ago in Austria and described by Khek as a natural hybrid between the alien (nowadays regarded also as invasive) S. canadensis and native S. virgaurea. Although interspecific hybridization in the genus Solidago is considered to be relatively common, hybrid nature of S. × niederederi has not been independently proven using molecular tools, to date. Because proper identification of the parentage for the hybrid Solidago individuals solely based on morphological features can be misleading, in this paper we report an additive polymorphism pattern expressed in the ITS sequences obtained from individuals representing S. × niederederi, and confirm the previous hypothesis that the parental species of this hybrid are S. canadensis and S. virgaurea. Additionally, based on variability at the cpDNA rpl32-trnL locus, we showed that in natural populations hybridization occurs in both directions.     

Field-based artificial crossings indicate partial compatibility of reciprocal crosses between <Emphasis Type="Italic">Pinus sylvestris</Emphasis> and <Emphasis Type="Italic">Pinus mugo</Emphasis> and unexpected chloroplast DNA inheritance

Crossability relationships between Scots pine (Pinus sylvestris L.) and mountain dwarf pine (Pinus mugo Turra) was studied, using artificial pollination approach. Partial compatibility of the reciprocal crossings of these species was proved experimentally, validating the idea of a spontaneous formation of their hybrid swarms under natural conditions. The hybrids were validated using organellar DNA markers and nuclear DNA microsatellites. Based on the percentage of filled seeds, the interspecific crossings were less efficient than the intraspecific cross-pollinations of P. sylvestris and P. mugo individuals. Both species were found to intercross readily with individuals of their putative hybrid swarm, P. mugo exhibiting a higher hybridological affinity towards putatively hybrid individuals than P. sylvestris. Validation of the hybrids confirmed the paternal inheritance of chloroplast DNA (cpDNA) in the combination P. sylvestris × P. mugo only. Surprisingly, in the reciprocal crossing P. mugo × P. sylvestris, maternal inheritance of cpDNA was revealed. Obtained results offer a new insight into the direction and intensity of gene flow within the hybrid swarms of Scots pine and mountain dwarf pine.     

Chromosomal Sil system contributes to silver resistance in <Emphasis Type="Italic">E. coli</Emphasis> ATCC 8739

The rise of antibiotic resistance in pathogenic bacteria is endangering the efficacy of antibiotics, which consequently results in greater use of silver as a biocide. Chromosomal mapping of the Cus system or plasmid encoded Sil system and their relationship with silver resistance was studied for several gram-negative bacteria. However, only few reports investigated silver detoxification mediated by the Sil system integrated in Escherichia coli chromosome. Accordingly, this work aimed to study the Sil system in E. coli ATCC 8739 and to produce evidence for its role in silver resistance development. Silver resistance was induced in E. coli ATCC 8739 by stepwise passage in culture media containing increasing concentrations of AgNO₃. The published genome of E. coli ATCC 8739 contains a region showing strong homology to the Sil system genes. The role of this region in E. coli ATCC 8739 was assessed by monitoring the expression of silC upon silver stress, which resulted in a 350-fold increased expression. De novo sequencing of the whole genome of a silver resistant strain derived from E. coli ATCC 8739 revealed mutations in ORFs putative for SilR and CusR. The silver resistant strain (E. coli AgNO₃R) showed constitutive expression of silC which posed a cost of fitness resulting in retarded growth. Furthermore, E. coli AgNO₃R exhibited cross-resistance to ciprofloxacin and a slightly increased tolerance to ampicillin. This study demonstrates that E. coli is able to develop resistance to silver, which may pose a threat towards an effective use of silver compounds as antiseptics.     

Association Between Chronic Exposure to Tobacco Smoke and Accumulation of Toxic Metals in Hair Among Pregnant Women

Tobacco smoke contains various toxic heavy metals that individuals are exposed to when they smoke. Despite the presence of heavy metals in tobacco smoke, the relationship between smoking and the accumulation of toxic metals in pregnant women after long-term exposure remains under discussion. We examined the association between long-term exposure to tobacco smoke and the accumulation of toxic metals in the hair of female participants. Our study recruited 252 women from the Shanxi and Hebei provinces of Northern China; these participants were self-reported non-active smokers, and had previously delivered healthy babies without birth defects. Scalp hair was collected and analyzed for nicotine and cotinine and five potentially toxic metals (specifically, silver, chromium, cadmium, mercury, and lead). Our results showed significant positive correlations between cotinine and four metals, including silver (r?=?0.369, p?<?0.001), cadmium (r?=?0.185, p?<?0.01), mercury (r?=?0.161, p?<?0.05), and lead (r?=?0.243, p?<?0.001). Significant positive correlations were also found between nicotine and three metals—specifically silver (r?=?0.331, p?<?0.001), cadmium (r?=?0.176, p?<?0.01), and lead (r?=?0.316, p?<?0.001). A logistic regression model showed significant associations between cotinine and potentially toxic metals including mercury, silver, and lead (with or without adjusting for potential confounders). We thus conclude that long-term passive smoking could potentially increase the exposure level of toxic metals including lead, silver, and mercury in our study, which are especially harmful for pregnant women and their unborn fetus.     

The hybrid nature of <Emphasis Type="Italic">Danaea plicata</Emphasis> (Marattiaceae), a Costa Rican endemic

We present evidence that Danaea plicata, endemic to Costa Rica, is a hybrid between D. carillensis and D. crispa. The laminae of D. plicata are intermediate in several morphological characters between the two putative parents, and the spores of D. plicata are misshapen and collapsed. The stomatal density of D. plicata is intermediate between that of D. crispa, which has no stomata, and D. carillensis. Circumstantial evidence also supports hybrid origin: D. plicata occurs only within the elevational range of its putative parents, and it is often found growing with them. This is the second report of a hybrid in Danaea. A lectotype is designated for D. plicata .     

Thermostability enhancement of chitosanase CsnA by fusion a family 5 carbohydrate-binding module

Objective

To determine the effects of carbohydrate-binding modules (CBMs) on the thermostability and catalytic efficiency of chitosanase CsnA.

Results

Three CBMs (BgCBM5, PfCBM32-2 and AoCBM35) were engineered at the C-terminus of chitosanase CsnA to create hybrid enzymes CsnA-CBM5, CsnA-CBM32 and CsnA-CBM35. K _m values of all the hybrid enzymes were lower than that of the wild type (WT) enzyme; however, only CsnA-CBM5 had an elevated specific activity and catalytic efficiency. The fusion of BgCBM5 enhanced the thermostability of the enzyme, which exhibited a 8.9 °C higher T₅₀ and a 2.9 °C higher T_m than the WT. Secondary structural analysis indicated that appending BgCBM5 at the C-terminus considerably changed the secondary structure content.

Conclusions

The fusion of BgCBM5 improved the thermal stability of CsnA, and the obtained hybrid enzyme (CsnA-CBM5) is a useful candidate for industrial application.

     

Food habits and relative abundances of native piscivores: implications for controlling common carp

Common carp (Cyprinus carpio, carp) are a widespread and ecologically destructive invasive fish species. Carp management is critical for maintaining healthy aquatic ecosystems, and many control options are available, but most have proven to be ineffective. Carp abundances have increased at The Nature Conservancy’s Emiquon Preserve, Illinois, since its restoration in 2007 despite management efforts to suppress this species. We conducted a comparative diet study in Illinois, Tennessee, and Wisconsin to test whether bowfin (Amia calva), spotted gar (Lepisosteus oculatus, gar), and largemouth bass (Micropterus salmoides) commonly preyed upon carp. We focused on bowfin and gar because they are hypoxia-tolerant, similar to carp. We also assessed whether specific fish community characteristics were correlated with carp relative abundances. We found no evidence that bowfin, gar, and bass consumed large numbers of carp. However, carp may be limited in some ecosystems (e.g., Reelfoot Lake, Tennessee) through alternative mechanisms associated with bowfin, gar, bass, and bluegill (Lepomis macrochirus) included in a diverse native fish community.     

Antimicrobial properties of ternary eutectic aluminum alloys

Several Escherichia coli deletion mutants of the Keio collection were selected for analysis to better understand which genes may play a key role in copper or silver homeostasis. Each of the selected E. coli mutants had a deletion of a single gene predicted to encode proteins for homologous recombination or contained functions directly linked to copper or silver transport or transformation. The survival of these strains on pure copper surfaces, stainless steel, and alloys of aluminum, copper and/or silver was investigated. When exposed to pure copper surfaces, E. coli ΔcueO was the most sensitive, whereas E. coli ΔcopA was the most resistant amongst the different strains tested. However, we observed a different trend in sensitivities in E. coli strains upon exposure to alloys of the system Al–Ag–Cu. While minor antimicrobial effects were detected after exposure of E. coli ΔcopA and E. coli ΔrecA to Al–Ag alloys, no effect was detected after exposure to Al–Cu alloys. The release of copper ions and cell-associated copper ion concentrations were determined for E. coli ΔcopA and the wild-type E. coli after exposure to pure copper surfaces. Altogether, compared to binary alloys, ternary eutectic alloys (Al–Ag–Cu) had the highest antimicrobial effect and thus, warrant further investigation.