<Emphasis Type="Italic">SnRK2</Emphasis> Homologs in <Emphasis Type="Italic">Gossypium</Emphasis> and <Emphasis Type="Italic">GhSnRK2.6</Emphasis> Improved Salt Tolerance in Transgenic Upland Cotton and <Emphasis Type="Italic">Arabidopsis</Emphasis>

SnRK2s are a large family of plant-specific protein kinases, which play important roles in multiple abiotic stress responses in various plant species. But the family in Gossypium has not been well studied. Here, we identified 13, 10, and 13 members of the SnRK2 family from Gossypium raimondii, Gossypium arboreum, and Gossypium hirsutum, respectively, and analyzed the locations of SnRK2 homologs in chromosomes based on genome data of cotton species. Phylogenetic tree analysis of SnRK2 proteins showed that these families were classified into three groups. All SnRK2 genes were comprised of nine exons and eight introns, and the exon distributions and the intron phase of homolog genes among different cotton species were analogous. Moreover, GhSnRK2.6 was overexpressed in Arabidopsis and upland cotton, respectively. Under salt treatment, overexpressed Arabidopsis could maintain higher biomass accumulation than wild-type plants, and GhSnRK2.6 overexpression in cotton exhibited higher germination rate than the control. So, the gene GhSnRK2.6 could be utilized in cotton breeding for salt tolerance.     

Identification and Pathogenicity of Fungal Pathogens Causing Black Point in Wheat on the North China Plain

Fungi associated with black point were isolated from three highly susceptible wheat genotypes in the North China Plain. The 21 isolates represented 11 fungal genera. The most prevalent genera were Alternaria (isolation frequency of 56.7%), Bipolaris (16.1%), and Fusarium (6.0%). The other eight genera were Curvularia, Aspergillus, Cladosporium, Exserohilum, Epicoccum, Nigrospora, Penicillium, and Ulocladium; their isolation frequencies ranged from 0.8 to 4.8%. The pathogenicity of the isolates was individually assessed in the greenhouse by inoculating wheat plants with spore suspensions. Ten of the 21 isolates caused significantly higher incidences of black point than that the controls. These isolates belonged to eight fungal species (A. alternata, B. sorokiniana, B. crotonis, B. cynodontis, C. spicifera, F. equiseti, E. rostratum, and E. sorghinum) based on morphological traits and phylogenetic analysis. The average incidences of black point in the eight fungal species were 32.4, 54.3, 43.0, 41.9, 37.2, 38.8, 50.1, and 34.1%, respectively. B. sorokiniana and A. alternata were determined to be the most important pathogens in the North China Plain based on fungal prevalence and symptom severity. This study is the first to identify E. rostratum as a major pathogen causing black point in wheat.     

Anatomical features of species of Cyperaceae from northeastern Brazil

Seventy-three species from 17 genera of Cyperaceae were studied with the aim of identifying and confirming those species with Kranz anatomy. Among the species studied, 36 exhibited Kranz anatomy; 37 did not. Of the four types of Kranz anatomy recognized in Cyperaceae, three were encountered: the chlorocyperoid type in the genera Cyperus, Kyllinga, Lipocarpha, Pycreus, and Remirea; the fimbristyloid type in Abildgaardia, Bulbostylis, and Fimbristylis; and the rhynchosporoid type in Rhynchospora. Non-Kranz anatomy was confirmed in species of the following genera: Becquerelia, Calyptrocarya, Cyperus, Diplacrum, Eleocharis, Fuirena, Hypolytrum, Pleurostachys, Rhynchospora, and Scleria. The anatomical data obtained corroborate earlier studies of species of Cyperaceae as to the presence of Kranz anatomy and the anatomical types in several species and the “Kranzkette” pattern in Cyperus ligularis and Cyperus pohlli.     

Conspecific tolerance and heterospecific competition as mechanisms for overcoming resistance to invasion by an intertidal crab

The success of the invasive Asian shore crab, Hemigrapsus sanguineus, stems partly from its ability to exclude established crab species from preferred rocky and cobble intertidal habitat. Here, we assessed preference and competition for habitat types (cobble vs. sand) for H. sanguineus and two competitor species; the previous invasive green crab, Carcinus maenas, and the native rock crab, Cancer irroratus, in New England. In simple laboratory experiments, we paired similarly sized heterospecifics and conspecifics from each species, and also grouped combinations of C. maenas and H. sanguineus in a series of four-individual sets in order to dissect the outcome of intra- and inter-specific competition at different densities. Individually, all three species preferred cobble substrate. With paired conspecifics, H. sanguineus individuals would cohabitate in cobble, whereas C. maenas and C. irroratus individuals each excluded conspecifics from cobble. In heterospecific pairs, H. sanguineus excluded both C. maenas and C. irroratus from cobble. C. maenas and C. irroratus, were equally likely to exclude the other species, but rarely excluded H. sanguineus. In larger assemblages, H. sanguineus preferentially grouped under cobble, whereas C. maenas were more evenly distributed among habitat types. These observations demonstrate that conspecific tolerance and heterospecific competition can be effective, complementary mechanisms for overcoming invasion resistance. Such mechanisms help explain the well-studied success of H. sanguineus following its introduction into New England coastal habitats, and the resulting exclusion of preexisting crab species.     

Molecular characterization and phylogenetic analysis of Wx genes from three Taeniatherum diploid species

In wheat seeds, starch synthase I or the Waxy protein is an enzyme involved in amylose synthesis. The gene encoding this enzyme is Wx and in this study, eight novel Wx alleles were identified in three diploid Taeniatherum species. The variability of these alleles was evaluated, and their nucleotide sequences were compared with those of homologous alleles from wheat. Two types of Taeniatherum Wx alleles were detected in three diploid species Ta. caput-medusae, Ta. asperum, and Ta. crinitum. A phylogenetic analysis indicates that the Taeniatherum Wx alleles were more closely related to Wx alleles from Aegilops species with C, D, M, and U genomes than to Wx alleles of other species. These alleles represent a potential genetic resource that may be useful in wheat breeding programs.     

The bitter crab syndrome in commercial crabs in the Western part of the Bering and Chukchi Seas

We studied the distribution of the “bitter-crab” syndrome, a disease caused by the parasitic dinoflagellate Hematodinium sp., in eight commercial species of crabs in the west of the Bering and Chukchi seas. The crabs (25 388 individuals) were sampled during bottom trawl surveys of July?September 2010 and October?November 2012. The disease was first identified visually by a color change of the exoskeleton and the hemolymph of the animals and then using microscope analysis of hemolymph samples. Infestation was detected in crabs of three species, Chionoecetes opilio, C. bairdi, and Paralithodes platypus. The prevalence of the disease (the percent of infected individuals relative to all of those examined) in C. bairdi and P. platypus was very low, 0.1 and 0.3%, respectively. Infestation was widespread among C. opilio, its peak in the Bering Sea was in the fall. The average prevalence of the crab disease in different areas of the Bering Sea ranged from 0.8 to 10.8%. A high rate of crab infection was recorded in the Korfa Bay. In the Chukchi Sea, the average prevalence was 2%. Infestation by Hematodinium sp. was not revealed in the deep-sea snow crabs Chionoecetes tanneri and C. angulatus, and in three species of lithodid crabs, Paralithodes camtschaticus, P. brevipes, and Lithodes couesi. This can be explained by the small sample volume and/or ecology of these species, since the disease was registered in other areas in four of them.     

Polymorphism of the mitochondrial DNA control region in eight sturgeon species and development of a system for DNA-based species identification

Intraspecific and interspecific nucleotide sequence variations of the mtDNA control region (D-loop) were studied with mtDNAs isolated from tissue specimens of more than 1400 sturgeons of nine species: Russian sturgeon Acipenser gueldenstaedtii, Persian sturgeon A. persicus, Siberian sturgeon A. baerii, Amur sturgeon A. schrenkii, Fringebarbel sturgeon A. nudiventris, sterlet A. ruthenus, stellate sturgeon A. stellatus, beluga Huso huso, and kaluga H. dauricus. The results were used to analyze the interspecific variation of the mtDNA control region in the given set of species and to develop a test system of ten species-specific primers, which allowed species identification from noninvasive tissue samples, spawn, and food products of eight species. The system proved suitable for multiplex PCR. A method was developed for the first time to reliably differentiate the A. baerii mitotype and the baerii-like mitotype of A. gueldenstaedtii. It was found that, although genetically separate, A. gueldenstaedtii and A. persicus are relatively young species and have common mitochondrial haplotypes, precluding their identification via mtDNA analysis alone. To develop a system for species identification of A. gueldenstaedtii and A. persicus, it is necessary to study the polymorphism of nuclear markers.     

Pollen movement by the bat <Emphasis Type="Italic">Artibeus jamaicensis</Emphasis> (Chiroptera) in an agricultural landscape in the Yucatan Peninsula,Mexico

Artibeus jamaicensis is a medium-sized frugivorous microchiropteran bat that complements its diet with nectar and pollen during the dry season. We investigated which species of pollen are carried by A. jamaicensis in order to determine its potential role as a plant pollinator in the northern Yucatan Peninsula. We collected pollen from the fur of 192 individuals throughout the year from April 2004 to March 2005. We recorded pollen from nine plant species of eight families and found five unidentified pollen types, with the highest pollen species richness recorded in June. A. jamaicensis moved pollen of Erythrina standleyana and Mimosa bahamensis, which have not hitherto been reported as visited by this species. The most abundant pollen in the samples was found to be that of three tree species: Ceiba pentandra, C. aesculifolia and Lysiloma latisiliquum. Very few samples contained pollen in the rainy season, when the bats fed mainly on fruits. A. jamaicensis can fly several kilometres among foraging locations and dispersed large amounts of pollen from tree species growing near cenotes as well as those not present at cenotes but occurring in other forest fragments, highlighting its importance as a pollen vector among forest fragments in the largely deforested landscape of the Yucatan Peninsula, helping to reduce the negative effects of forest fragmentation. Ceiba appears to benefit from the role of A. jamaicensis as a pollen vector, and the species play an important ecological role in the Yucatán landscape, supplying shade, nectar and fruit for wildlife.     

Plant functional types and their ecological responses to salinization in saline grasslands,Northeastern China

Photosynthetic pathways (C₃, C₄, and CAM) and morphological functional types (e.g. shrubs, high perennial grasses, short perennial graminaceous plants, annual grasses, annual forbs, perennial forbs, halophytes, and hydrophytes) were identified for the species from salinity grasslands in Northeastern China, using the data from both stable carbon isotope ratios (δ¹³C) and from the references published between 1993 and 2002. 150 species, in 99 genera and 37 families, were found with C₃ photosynthesis, and most of these species are dominants [e.g. Leymus chinensis (Trin.) Tzvel., Calamagrostis epigeios (L.), Suaeda corniculata (C.A. Mey.) Bunge]. 40 species in 25 genera and 8 families were identified with C₄ photosynthesis [e.g. Chloris virgata Sw., Aeluropus littoralis (Gouan) Parlat] and 1 species with CAM photosynthesis. Gramineae is the leading family with C₄ photosynthesis (27 species), Chenopodiaceae ranks the second (5 species). The significant increase of C₄ proportions with intense salinity suggested this type plant is remarkable response to the grassland salinization in the region. 191 species were classified into eight morphological functional types and the changes of most of these types (e.g. PEF, HAL, and HPG) were consistent with habitats and vegetation dynamics in the saline grassland. My findings suggest that the photosynthetic pathways, combined with morphological functional types, are efficient means for studying the linkage between species and ecosystems in this type of saline grassland in Northeastern China.     

Pitfall trap construction affects the efficacy of ground beetle counts

Ground beetles were sampled in a broadleaved deciduous forest in Kaluga Province in April–October 1995 using 90 traps grouped in 18 experimental plots. Three types of pitfall traps were used: glass jars, white plastic cups, and cylindrical containers made of transparent plastic bottles. Two types of cover put above the traps were tested: transparent and black. Altogether, 72 carabid species were found, of which only 10 species were shared by all the experimental plots: Leistus terminatus, Carabus hortensis, C. glabratus, Cychrus caraboides, Pterostichus niger, P. oblongopunctatus, P. strenuus, P. melanarius, Calathus micropterus, and Badister lacertosus. The Jaccard binary similarity index between the experimental plots amounted to 37–68% while the Bray-Curtis similarity index was 66–89%. Both the trap type and the cover color significantly affected the similarity of the species structure and species composition of the samples. Plastic cups provided the highest catches of beetles, but this was due to the most abundant species, P. oblongopunctatus. Containers provided the highest catches of C. glabratus. The total abundance was higher for the traps with transparent covers than for those with black covers. Traps with transparent covers provided significantly higher catches of L. terminatus, P. oblongopunctatus, Asaphidion flavipes, and Harpalus rufipes. An adequate assessment of the species composition of a particular habitat requires at least 30 pitfall traps.     

Genetic and phenotypic characterizations of <Emphasis Type="Italic">Xenorhabdus</Emphasis> species (Enterobacteriales: Enterobacteriaceae) isolated from steinernematid nematodes (Rhabditida: Steinernematidae) in Japan

The bacterial species of the genus Xenorhabdus in the family Enterobacteriaceae have a mutualistic association with steinernematid entomopathogenic nematodes (EPNs), which have been used as biological control agents against soil insect pests. In this study we present the genetic and phenotypic characterizations of the Xenorhabdus species isolated from steinernematid nematodes in Japan. The 18 Japanese Xenorhabdus isolates were classified into five bacterial species based on 16S ribosomal RNA (16S rRNA) gene sequences: Xenorhabdus bovienii, Xenorhabdus hominickii, Xenorhabdus indica, Xenorhabdus ishibashii, and Xenorhabdus japonica. There was no genetic variation between the 16S RNA sequences among the three X. ishibashii isolates, 0–0.1% variation among the five X. hominickii isolates, and 0–0.5% among the eight X. bovienii isolates. Phenotypic characterization demonstrated that representative isolates of the five bacterial species shared common characteristics of the genus Xenorhabdus, and only X. hominickii isolates produced indole. Symbiotic association and co-speciation of Xenorhabdus bacteria with Steinernema nematodes from Japan are discussed.     

Lepidoptera Papilionoidea communities as a sentinel of biodiversity threat: the case of wild boar rooting in a Mediterranean habitat

Butterfly communities can be modified by the activities of large mammals. The wild boar (Sus scrofa) is one of the most common mammals in Europe and has notably expanded its distribution range in recent decades. The present work aimed to investigate the possible effect of wild boar rooting activity on butterflies in olive groves inside the “Cilento, Vallo di Diano and Alburni” National Park. Butterflies were surveyed in five Rooted (R) and five Control areas (C). Transects were made from April to September in 2011 and 2012. Forty-three species and 3659 individuals were found, of which 39 species and 2426 individuals were detected in C areas and 31 species and 1233 individuals in R areas. A community-level approach showed a significantly higher abundance, richness and Shannon–Wiener index in C than in R. An ecological-level approach indicated that more specialised butterflies were significantly more affected by wild boar activity. Finally, the response of single species was investigated: two species (Colias croceus and Polyommatus icarus) were significantly more represented in R, whereas six species (Aricia agestis, Hipparchia statilinus, Lasiommata megera, Melanargia arge, Pyronia cecilia and Thymelicus acteon) were significantly more abundant in C. Three species considered at risk (M. arge; Annex II of Directive 92/43/EEC; H. statilinus and T. acteon: European Red List) were less represented in rooted areas. Overall, the intensive wild boar activity negatively correlated with butterflies in the olive groves studied.     

Development and characterization of chloroplast microsatellite markers for <Emphasis Type="BoldItalic">Pinus massoniana</Emphasis> and their application in <Emphasis Type="BoldItalic">Pinus</Emphasis> (Pinaceae) species

Pinus massoniana is one of the important afforestation and pioneer tree species, which is widely distribute in southern China. Chloroplast simple sequence repeat markers (cpSSRs) have been widely used in studies of tree genetics, phylogenetic and breeding. We sequenced the whole chloroplast genome sequences of P. massoniana using PCR and Sanger sequencing. A total of 71 cpSSRs were identified, among which mononucleotide repeats were predominant (70.42%). Seventeen primer pairs were developed and amplification tests were conducted with 15 P. massoniana individuals. Also, cross-species amplification tests were conducted among 15 individuals per Pinus species, including P. elliottii, P. bungeana, P. armandii, P. caribaea, P. tabulaeformis, P. taiwanensis and P. yunnanensis which revealed polymorphic information content ranging from 0.2 to 0.8 and average of haploid diversity (h) ranging from 0.29 to 0.63. In addition, the polymorphic cpSSRs were useful in distinguishing the sampled pine species, and could be powerful tool in phylogenetic studies.     

Prevalence and Phylogenetic Analysis of <Emphasis Type="Italic">Bartonella</Emphasis> Species of Wild Carnivores and Their Fleas in Northwestern Mexico

The host–parasite–vector relationship of Bartonella spp. system in wild carnivores and their fleas from northwestern Mexico was investigated. Sixty-six carnivores belonging to eight species were sampled, and 285 fleas belonging to three species were collected during spring (April–May) and fall (October–November) seasons. We detected Bartonella species in 7 carnivores (10.6%) and 27 fleas (9.5%) through either blood culture or PCR. Of the 27 Bartonella-positive fleas, twenty-two were Pulex simulans, three were Pulex irritans and one was Echidnophaga gallinacea. The gltA gene and ITS region sequences alignment revealed six and eight genetic variants of Bartonella spp., respectively. These variants were clustered into Bartonella rochalimae, Bartonella vinsonii subsp. berkhoffii and another genotype, which likely represents a novel species of Bartonella spp. Although experimental infection studies are required to prove the vector role of P. simulans, our results suggest that this flea may play an important role in the Bartonella transmission. The results indicated possible host-specific relationships between Bartonella genotypes and the families of the carnivores, but further studies are needed to verify this finding. The presence of zoonotic species of Bartonella spp. in wild carnivores raises the issue of their potential risk for humans in fragmented ecosystems.     

Antipredator Behavioral Traits of some <Emphasis Type="Italic">Agriotes</Emphasis> Wireworms (Coleoptera: Elateridae) and their Potential Implications for Species Identification

Many insects show a typical antipredator behavior. The two simplest tactics are immobilization and flight. The antipredator behavior of wireworms, the soil-dwelling polyphagous larvae of click beetles, has not yet been investigated. Birds are known to attack wireworms. Our experimental method (picking up and dropping wireworms) mimics the first attack of a predator, such as a bird. In Europe, some Agriotes species are of particular importance as crop pests. As these species differ considerably, in ecology, damage threshold, and pathogen resistance, knowing more about the species specific biology and behavior will support the establishment of successful control measures. In an extensive microcosm study, we observed the antipredator behavior of wireworms belonging to four different Agriotes species (A. lineatus, A. obscurus, A. sordidus, and A. ustulatus) before and during digging into the soil after a startle-stimulus. We recorded wireworm immobility frequency and duration, and locomotor activity at three temperatures. We also analyzed genetic and morphologic attributes of A. lineatus larvae from two different origins. Following behavior types were found reflecting different escape tactics: (a) distinct tonic immobility (A. lineatus), (b) brief/inconsistent tonic immobility (A. obscurus, A. sordidus), and (c) immediate fleeing/burying (A. ustulatus). Additionally, we found small but significant differences in morphology, behavior, and genetics (PCR results) between A. lineatus larvae originating from the Netherlands and those originating from Germany. The biological information we gathered about each species will further increase the understanding of these insects and improve interpretation of future experimental data. In addition, the described behavioral differences between Agriotes obscurus and A. lineatus wireworms may represent a useful additional criterion in morphological species identification.     

Adaptations in phytoplankton life strategies to imposed change in a shallow urban tropical eutrophic reservoir,Garças Reservoir,over 8 years

This study aimed at evaluating the phytoplankton adaptive strategies of phytoplankton in a shallow urban eutrophic tropical reservoir, Garças Reservoir, over temporal and vertical scales. Samples were taken monthly for eight consecutive years (1997–2004) at a fixed set of depths in the water column. At the beginning, the reservoir was eutrophic with 20% of its surface covered by water hyacinth Eichhornia crassipes (phase I). Then, in phase II, water hyacinth grew to cover up to 40–70% of the surface. In phase III it was mechanically removed. After macrophyte removal the limnology changed, drastically. This removal modified nutrient dynamics, drastically reduced water transparency, and increased both primary production and phytoplankton biomass, the latter impeding light penetration. Phytoplankton life strategies during water hyacinth dominance (phase II) responded promptly to this environmental disturbance in conditions of low dissolved oxygen (DO) and soluble reactive phosphorus (SRP) and high free CO₂ values. After macrophyte removal, a permanent cyanobacterial monoculture was established. Phase I was dominated basically by Sphaerocavum brasiliense, mainly during the stratified months, represented by non-flagellate colonies, the M functional group, S-strategists, and greater biomass of species with high maximal axial linear dimension (MLD) and cell volumes. Phase II was dominated by Cryptomonas curvata, C. erosa, C. marssonii, Trachelomonas sculpta, T. volvocinopsis, T. kelloggii, T. hispida, Peridinium spp., Aphanocapsa spp., and Aphanothece spp., and was represented by unicellular flagellate species, Y, W2, K, L_O functional groups, and C-strategists, greater biomass of species with intermediate MLD and cell volumes. Phase III was dominated by Microcystis aeruginosa, M. panniformis, Cylindrospermopsis raciborskii, Planktothrix agardhii, and Aphanizomenon gracile, represented by non-flagellate colonies, M, S, H1, S functional groups, and S and R-strategists, greater biomass of species with high MLD and cell volumes (>50 μm and >10⁴ μm³, respectively).     

Nitrogen enrichment contributes to positive responses to soil microbial communities in three invasive plant species

Increased resource availability and feedbacks with soil biota have both been invoked as potential mechanisms of plant invasion. Nitrogen (N) deposition can enhance invasion in some ecosystems, and this could be the result of increased soil N availability as well as shifts in soil biota. In a two-phase, full-factorial greenhouse experiment, we tested effects of N availability and N-impacted soil communities on growth responses of three Mediterranean plant species invasive in California: Bromus diandrus, Centaurea melitensis, and Hirschfeldia incana. In the first phase, plants were grown individually in pots and inoculated with sterile soil, soil from control field plots or soil from high N addition plots, and with or without supplemental N. In the second phase, we grew the same species in soils conditioned in the first phase. We hypothesized growth responses would differ across species due to species-specific relationships with soil biota, but overall increased N availability and N-impacted soil communities would enhance plant growth. In the first phase, Centaurea had the greatest growth response when inoculated with N-impacted soil, while Bromus and Hirschfeldia performed best in low N soil communities. However, in phase two all species exhibited positive growth responses in N-impacted soil communities under high N availability. While species may differ in responses to soil biota and N, growth responses to soils conditioned by conspecifics appear to be most positive in all species under high N availability and/or in soil communities previously impacted by simulated N deposition. Our results suggest N deposition could facilitate invasion due to direct impacts of soil N enrichment on plant growth, as well as through feedbacks with the soil microbial community.     

Revision of Jaegeria (Compositae-Heliantheae)

The genusJaegeria consists of a diploid-polyploid complex of eight species found in moist habitats from Mexico to South America. The distributions, habitats, generic affinities, and tribal placement are discussed. Chromosome numbers were determined for all species exceptJ. axillaris, which is known only from Colombia.J. glabra andJ. pedunculata are diploid (2n = 18) ;J. hirta, J. macrocephala, J. gracilis, andJ. crassa are tetraploid (2n = 36) ;J. bellidiflora is octoploid (2n = 72). One Galápagos Island endemic,J. gracilis, is quite similar to the common mainland species,J. hirta, but the other endemic,J. crassa, is quite distinct from any other species.J. bellidijlora is most similar morphologically toJ. glabra;J. macrocephala is allied toJ. pedunculata. J. axillaris is somewhat distinct from the other species.