Fish recruitment in rivers with modified discharge depends on the interacting effects of flow and thermal regimes

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Engineered water level management facilitates recruitment of non-native common carp, Cyprinus carpio, in a regulated lowland river

River regulation can advantage non-native aquatic biota at the expense of native species. Nevertheless, flow regulating structures are sometimes used with the aim of achieving positive environmental outcomes in aquatic ecosystems. In the lower River Murray, Australia, drought-induced water level recession and acid sulfate soil exposure prompted the construction of an earthen levee, isolating a section of river channel (the Goolwa weir pool (GWP)) within which water levels were managed to mitigate a risk of water body acidification. The present study aimed to determine the impact of water level management on the fish community by investigating variation in species abundance and recruitment between sites subject to water level management in the GWP and unmanaged sites in Lake Alexandrina. Prior to levee construction, in August 2009, the abundance of the non-native common carp was similar in the GWP and Lake Alexandrina. Following water level management, in December 2009 and April 2010, the abundance of common carp in the GWP was approximately 1000 and 250 times greater than abundance in Lake Alexandrina, as a result of recruitment of young-of-year fish. No native freshwater species were significantly more abundant in the GWP in August 2009, December 2009 or April 2010. The results of this study suggest that the isolation of a river reach and a managed rise in water level facilitated spawning and recruitment of a non-native fish species. As such, the ecological benefits and risks of restoration and mitigation projects that involve the construction of flow regulating structures and water level management should be carefully considered.     

Optimising environmental watering of floodplain wetlands for fish

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Effects of flooding on recruitment and dispersal of the Southern Pygmy Perch (Nannoperca australis) at a Murray River floodplain wetland

Summary With limited evidence linking Australia's Murray‐Darling Basin fish species and flooding, this study assessed annual variation in abundance and recruitment levels of a small‐bodied, threatened floodplain species, the Southern Pygmy Perch (Nannoperca australis), in floodplain habitats (creeks, lakes and wetlands) in the Barmah‐Millewa Forest, Murray River, Australia. Spring and summer sampling over a 5‐year period encompassed large hydrological variation, including 1 year of extended floodplain inundation which was largely driven by an environmental water release, and 2 years of severe regional drought. Recruitment and dispersal of Southern Pygmy Perch significantly increased during the floodplain inundation event compared with the other examined years. This study provides valuable support for an environmental water allocation benefiting a native species, and explores the link between flooding and its advantages to native fish. This suggests that the reduced flooding frequency and magnitude as a result of river regulation may well be a major contributing factor in the species’ decline in the Murray‐Darling Basin.     

Effects of flooding on recruitment and abundance of Golden Perch (Macquaria ambigua ambigua) in the lower River Murray

Flooding is often considered a stimulus for production of fish in floodplain rivers. In the southern Murray–Darling Basin (MDB), Australia, however, few native fish species have been shown to use the floodplain for spawning, and recruitment has been positively and negatively associated with flooding. In 2010/11, extensive flooding in the lower River Murray provided an opportunity to investigate the recruitment response of Golden Perch (Macquaria ambigua ambigua) following 10 years of drought and floodplain isolation. Annual variation in Golden Perch abundance and recruitment were investigated in anabranch and main channel habitats at Chowilla in the floodplain geomorphic region of the lower River Murray over a 7‐year period incorporating the flood and 6 years of in‐channel flow. Spatial variation in recruitment in the lower River Murray was also investigated by comparing the age structure of Golden Perch in the swamplands/lakes, gorge and floodplain geomorphic regions. Golden Perch abundance in the Chowilla region increased significantly postflooding compared with drought years. Age structures indicated that increased abundance was due predominantly to fish spawned during the flood (2010/11) and the previous year (2009/10), which was characterised by in‐channel flows. Age structure was similar in the nearby Katarapko Anabranch system indicating a uniform postflood recruitment response in the floodplain geomorphic region. Juvenile Golden Perch from the 2010/11 and 2009/10 cohorts were less apparent in the gorge and swamplands/lakes regions. Golden Perch have flexible life histories and will spawn and recruit in association with in‐channel rises in flow and overbank flows, but significant increases in abundance in the lower River Murray may result from overbank flooding. Contemporary approaches to flow restoration in the MDB emphasise overbank flows and floodplain processes. We suggest, however, that environmental flow management that incorporates floodplain and in‐channel processes, at appropriate spatio‐temporal scales, will result in more robust populations of Golden Perch.     

Zooplankton response to flooding of a drought refuge and implications for the endangered fish species Craterocephalus fluviatilis cohabiting with alien Gambusia holbrooki

Disruption to a river’s natural flow regime changes its ecological character, which becomes unfavourable for previously adapted biota. The zooplankton particularly are affected, and survival of larval and juvenile fish is largely determined by their availability. Alien fishes can also impact on recruitment in native fishes, sometimes through competition. In this regard, the invasive eastern Gambusia Gambusia holbrooki is linked to the decline of several fish species. It can have a substantial influence in shaping plankton communities, which implies that it competes with native fish that rely on the microfauna. The effects of river regulation and over abstraction of water in the Murray–Darling Basin, south-eastern Australia, were exacerbated by drought from 1997 to 2010. Consequently, the endangered Murray hardyhead Craterocephalus fluviatilis underwent substantial population decline and extirpations. The purpose of this study is to determine if a link exists between zooplankton response to flooding of a drought refuge and the recruitment success of C. fluviatilis in the presence of G. holbrooki. Flooding triggered sharp and substantial increases in the zooplankton and their eggs, which was the sole food of C. fluviatilis. This apparently benefitted the recruitment of C. fluviatilis, and sometimes alleviated diet overlap with G. holbrooki. Conversely, the zooplankton in a nearby non-flooded refuge was low in abundance and diversity, and all fish species were extirpated. The findings indicate that the flooding of drought refugia with relatively small volumes of water can be timed with ecological cues that would otherwise be desynchronized in highly regulated rivers, particularly during drought.     

River regulation and fish larvae: variation through space and time

1. Patterns in abundance and distribution of larval fish in a heavily regulated and a mildly regulated Australian lowland river were compared over four breeding seasons to gain some insight into how river regulation affects fish populations.
2. Larvae from a total of 13 species from nine families were recorded from the two rivers. The mildly regulated Broken River supported twice as many species as the heavily regulated Campaspe River. The two rivers shared three introduced species but only two native species. The dominant species in the Campaspe was not found in the Broken River.
3. The two most abundant species in the Campaspe were classified as `opportunists'. They are small, short-lived species, which spawn for up to 9 months, encompassing extremes in temperature and flow. The extended spawning period may place a subset of larvae in optimal conditions for recruitment and is hypothesised as being the key to the success of these species.
4. Most species spawned each year, despite large interannual variation in flow and temperature conditions. Poor recruitment over several decades, rather than a failure to spawn, is considered the most likely explanation for differences in the larval fish faunas between the two rivers.
5. The highly regulated section of the Campaspe River downstream of the regulating impoundment is thought to provide suboptimal habitat conditions for larvae relative to the less regulated downstream sections.
6. The timing of occurrence of larvae of the dominant species varied by breeding season and may be the result of flexibility in the timing of spawning.     

Long‐term change to fish assemblages and the flow regime in a southeastern U.S. river system after extensive aquatic ecosystem fragmentation

The upper Tombigbee River in northeastern Mississippi now exists as a fragment, confluencing with and fed by an extensively modified aquatic landscape now called the Tennessee‐Tombigbee Waterway (TTW). We examined the changes to fish assemblages and flow regime after waterway construction based on contemporary comparisons to historical fish collections and discharge data. The river's flow regime has changed markedly since TTW construction. Analysis of discharge data from two stations for 15 years, pre‐ and post‐waterway, indicated significant differences in flow regime including increased minimum and base flows, lower spring and higher late summer‐autumn flows, and lower high flow durations, post‐TTW. These changes corresponded to significantly reduced regional and local species richness, and strong shifts in fish assemblage structure across a 20 yr time span. Post‐waterway fish assemblages were related strongly to measured environmental variables characterizing local habitats. Several lentic‐adapted species increased their abundances in lower reaches of the river, including a recent invader to the TTW system, the Mississippi silverside Menidia audens. Fragmentation of river ecosystems via disruption to hydrologic regimes is a major threat to aquatic biodiversity worldwide. Because the flow regime of this fragmented river is in part controlled by waterway operations via five minimum flow control structures, adaptive conservation and management efforts could be implemented in order to maintain and potentially restore the natural flow regime and the ecological integrity of the system.     

Diet of Murray cod (<Emphasis Type="Italic">Maccullochella peelii peelii</Emphasis>) (Mitchell) larvae in an Australian lowland river in low flow and high flow years

Researchers have hypothesised that influxes of pelagic zooplankton to river channels after floods and high flows are necessary for strong recruitment of some native fish species, including Murray cod (Maccullochella peelii peelii) (Mitchell), in the Murray–Darling river system, Australia. This study investigated the composition of the diet and gut fullness of drifting Murray cod larvae weekly during two spawning seasons with contrasting flows, to determine if pelagic zooplankton comprised a greater proportion of the gut contents and guts were fuller in a high flow (2000) than in a low flow (2001) year. Gut fullness and yolk levels of 267 larvae were ranked, and prey identified to family level. Approximately 40 and 70% of individuals had been feeding in 2000 and 2001, respectively. Gut fullness increased with declining yolk reserves. Larvae in both the years had an almost exclusively benthic diet, irrespective of the flow conditions at the time. Substantial inundation of dry ground in 2000, albeit restricted to in-channel benches, anastomosing channels and oxbow lakes, did not lead to an influx of pelagic, floodplain-derived zooplankton subsequently exploited by Murray cod larvae. These results have the implications for the management of regulated temperate lowland rivers: high flows cannot automatically be assumed to be beneficial for the fish larvae of all species and their food resources, and caution should be exercised with the timing of flow releases.     

Recovery from a fish kill in a semi‐arid Australian river: Can stocking augment natural recruitment processes?

Localized catastrophic events can dramatically affect fish populations. Management interventions, such as stocking, are often undertaken to re‐establish populations that have experienced such events. Evaluations of the effectiveness of these interventions are required to inform future management actions. Multiple hypoxic blackwater events in 2010–2011 substantially reduced fish communities in the Edward‐Wakool river system in the southern Murray‐Darling Basin, New South Wales, Australia. These events led to extensive fish kills across large sections of the entire system following a period of prolonged drought. To expedite recovery efforts, 119 661 golden perch Macquaria ambigua and 59 088 Murray cod Maccullochella peelii fingerlings were stocked at five locations over 3 years. All fish stocked were chemically marked with calcein to enable retrospective evaluation of wild or hatchery origin. Targeted collections were undertaken 3 years post‐stocking to investigate the relative contribution of stocking efforts and recovery via natural recruitment in the system. Of the golden perch retained for annual ageing (n = 93) only nine were of an age that could have coincided with stocking activities. Of those, six were stocked. The dominant year‐class of golden perch were spawned in 2009; before the stocking programme began and prior to blackwater events. All Murray cod retained (n = 136) were of an age that coincided with stocking activities, although only eight were stocked. Among the Murray cod captured, the dominant year‐class was spawned in 2011, after the blackwater events occurred. The results from this study provide first evidence that natural spawning and recruitment, and possibly immigration, were the main drivers of golden perch and Murray cod recovery following catastrophic fish kills. Interpreted in the context of other recent examples, the collective results indicate limited benefit of stocking to existing connected populations already naturally recruiting in riverine systems.     

Ecological impacts of dams,water diversions and river management on floodplain wetlands in Australia

Australian floodplain wetlands are sites of high biodiversity that depend on flows from rivers. Dams, diversions and river management have reduced flooding to these wetlands, altering their ecology, and causing the death or poor health of aquatic biota. Four floodplain wetlands (Barmah‐Millewa Forest and Moira Marshes, Chowilla floodplain, Macquarie Marshes, Gwydir wetlands) illustrate these effects with successional changes in aquatic vegetation, reduced vegetation health, declining numbers of water‐birds and nesting, and declining native fish and invertebrate populations. These effects are likely to be widespread as Australia has at least 446 large dams (>10 m crest height) storing 8.8 × 10⁷ ML (10⁶ L) of water, much of which is diverted upstream of floodplain wetlands. More than 50% of floodplain wetlands on developed rivers may no longer flood. Of all of the river basins in Australia, the Murray‐Darling Basin is most affected with dams which can store 103% of annual runoff and 87% of divertible water extracted (1983–84 data). Some floodplain wetlands are now permanent storages. This has changed their biota from one tolerant of a variable flooding regime, to one that withstands permanent flooding. Plans exist to build dams to divert water from many rivers, mainly for irrigation. These plans seldom adequately model subsequent ecological and hydrological impacts to floodplain wetlands. To avoid further loss of wetlands, an improved understanding of the interaction between river flows and floodplain ecology, and investigations into ecological impacts of management practices, is essential.     

Plant Establishment from the Seed Bank of a Degraded Floodplain Wetland: A Comparison of Two Alternative Management Scenarios

There has been little research examining the soil seed banks of degraded floodplain wetlands and their contribution to wetland rehabilitation in Australia. Our aim was to assess the establishment of plants from the seed bank that may occur following the delivery of an environmental water allocation to Kanyapella Basin, a 2950 ha wetland located on the floodplain of the Goulburn and Murray Rivers in northern Victoria, Australia. Two hypothetical water regimes were investigated (flooded and dry) in a glasshouse experiment, where plants were left to establish from the seed bank over a period of 124 days. Differences in the establishment of plants from the seed bank indicated that the return of a flooding regime is likely to have a significant effect on the composition of the wetland vegetation. Mapping of the distribution of plant species indicated that propagules were highly dispersed across the wetland for the majority of taxa, in contrast to the localised distribution of many of the plant species represented in the extant vegetation. Inundation favoured the establishment of native wetland and floodplain plants, although many areas of Kanyapella Basin that are currently ‘weed-free’ have the potential to become colonised and potentially dominated by introduced plants if the wetland is not managed appropriately. Overall, results supported the aim of management to reestablish a wetting and drying regime through use of an environmental water allocation. This study presents a significant example of the application of seed bank investigations in wetland ecology and management.     

Dam function rules based on brown trout flow requirements: design of environmental flow regimes in regulated streams

The operation of small hydroelectric dams built on mountain streams induce changes in stream flow regimes that are manifested not only in the intensity of flow events, but also in the variability and frequency of high- and low-flow episodes. Former studies have shown the influence of flow variability upon the dynamics of a resident brown trout population, especially that related to the stream flow regime during spawning, incubation and emerging periods. As these life-stages are known to determine the population dynamics in further ages, stream flow variability appears to be a major influence on the regulation of a wild brown trout population. Thus, mean flow discharge should not be the only parameter taken into account when establishing ecological flow regimes to support rehabilitation of degraded trout populations in mountain streams. Ecological stream flow regime characteristics are proposed as a basis for the design of environmental flow regimes in mountain reaches downstream of hydroelectric or water supply dams. Case studies were conducted in a high mountain basin in Central Spain (River Tormes) for a period of 5 years showing that relationship between duration and frequency of high and low flow episodes during egg incubation could be linked to young-of-the-year recruitment and quantified in terms of flow management units. Duration and frequency of flow discharges could be manipulated so as to create favourable hydrological conditions for restoring sustainable populations of brown trout in rivers affected by flow regulation Guest editors: R. L. Welcomme & G. Marmulla Hydropower, Flood Control and Water Abstraction: Implications for Fish and Fisheries     

Environmental watering triggers rapid frog breeding in temporary wetlands within a regulated river system

The Murray–Darling basin is the most extensively regulated river system in Australia and delivery of environmental water is increasingly being used in its management. Due to their sensitivity to hydrological changes, frogs are often targets of environmental watering actions, and site-specific data on their habitat and water requirements are essential for achieving optimal ecological outcomes. I investigated the spatial and temporal response of frogs to the environmental watering of temporary wetlands in the lower River Murray region to determine if watering (timing, duration and quality) triggered a breeding response and provided opportunities for juvenile recruitment. Frog and tadpole surveys were conducted each month from December 2014 to April 2015 at watered temporary wetlands and permanent wetlands along on the River Murray in South Australia. All seven frog species known from the lower Murray valley bred opportunistically after deliberate flooding of temporary wetland sites. Breeding was immediate and was observed at all watered sites. Tadpole development was largely synchronous and rapid, with the majority of frogs metamorphosing 3 to 4 months after wetlands were inundated. The abundance and diversity of tadpoles and frogs was significantly greater in watered wetlands than in permanent wetlands. Wetlands required inundation for a minimum duration of 4 months over summer and autumn to allow sufficient time for tadpoles to complete development. Environmental watering of wetlands via pumping, whilst highly localised, can target key ecological assets in dry conditions, and may provide critical breeding opportunities and refugia for maintaining frog species and their ecological roles.     

The use of Bayesian networks to guide investments in flow and catchment restoration for impaired river ecosystems

1.  The provision of environmental flows and the removal of barriers to water flow are high priorities for restoration where changes to flow regimes have caused degradation of riverine ecosystems. Nevertheless, flow regulation is often accompanied by changes in catchment and riparian land-use, which also can have major impacts on river health via local habitat degradation or modification of stream energy regimes.
2.  The challenges are determining the relative importance of flow, land-use and other impacts as well as deciding where to focus restoration effort. As a consequence, flow, catchment and riparian restoration efforts are often addressed in isolation. River managers need decision support tools to assess which flow and catchment interventions are most likely to succeed and, importantly, which are cost-effective.
3.  Bayesian networks (BNs) can be used as a decision support tool for considering the influence of multiple stressors on aquatic ecosystems and the relative benefits of various restoration options. We provide simple illustrative examples of how BNs can address specific river restoration goals and assist with the prioritisation of flow and catchment restoration options. This includes the use of cost and utility functions to assist decision makers in their choice of potential management interventions.
4.  A BN approach facilitates the development of conceptual models of likely cause and effect relationships between flow regime, land-use and river conditions and provides an interactive tool to explore the relative benefits of various restoration options. When combined with information on the costs and expected benefits of intervention, one can derive recommendations about the best restoration option to adopt given the network structure and the associated cost and utility functions.     

Hypoxic blackwater event severely impacts Murray crayfish (Euastacus armatus) populations in the Murray River,Australia

Prolonged flooding in 2010/11 ended a decade of drought and produced a large‐scale hypoxic blackwater event across the southern Murray‐Darling Basin, Australia. The hypoxic conditions caused fish kills and Murray crayfish Euastacus armatus to emerge from the water onto the river banks to avoid the poor water quality. This study examined the medium‐term impact of this blackwater event on Murray crayfish populations in the Murray River, where approximately 1800 km of the main channel were affected by hypoxia. Murray crayfish populations were surveyed in July 2012, along a 1100‐km section of the Murray River at 10 sites affected by hypoxic blackwater and six sites that were not affected, and data were compared with surveys of the same sites undertaken in July 2010, four months before the hypoxic blackwater event (before‐after‐control‐impact experimental design). Murray crayfish abundance in 2012 (post‐blackwater) was significantly lower at blackwater affected sites (81% reduction from 2010), but not at non‐affected sites. The hypoxic blackwater impacted Murray crayfish of both sexes and all size‐classes in a similar manner. The results demonstrate that prolonged periods of hypoxia can markedly impact populations of the long‐lived and slow‐growing Murray crayfish despite the species ability to emerge from hypoxic water. The findings highlight important challenges for the management of both the recreational fishery for this species and riverine flows in relation to hypoxic blackwater events.     

The ecology of rivers with contrasting flow regimes: identifying indicators for setting environmental flows

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Altered stream-flow regimes and invasive plant species: the Tamarix case

Aim  To test the hypothesis that anthropogenic alteration of stream-flow regimes is a key driver of compositional shifts from native to introduced riparian plant species.
Location  The arid south-western United States; 24 river reaches in the Gila and Lower Colorado drainage basins of Arizona.
Methods  We compared the abundance of three dominant woody riparian taxa (native Populus fremontii and Salix gooddingii , and introduced Tamarix ) between river reaches that varied in stream-flow permanence (perennial vs. intermittent), presence or absence of an upstream flow-regulating dam, and presence or absence of municipal effluent as a stream water source.
Results  Populus and Salix were the dominant pioneer trees along the reaches with perennial flow and a natural flood regime. In contrast, Tamarix had high abundance (patch area and basal area) along reaches with intermittent stream flows (caused by natural and cultural factors), as well as those with dam-regulated flows.
Main conclusions  Stream-flow regimes are strong determinants of riparian vegetation structure, and hydrological alterations can drive dominance shifts to introduced species that have an adaptive suite of traits. Deep alluvial groundwater on intermittent rivers favours the deep-rooted, stress-adapted Tamarix over the shallower-rooted and more competitive Populus and Salix . On flow-regulated rivers, shifts in flood timing favour the reproductively opportunistic Tamarix over Populus and Salix , both of which have narrow germination windows . The prevailing hydrological conditions thus favour a new dominant pioneer species in the riparian corridors of the American Southwest. These results reaffirm the importance of reinstating stream-flow regimes (inclusive of groundwater flows) for re-establishing the native pioneer trees as the dominant forest type.     

Fish and flow management in the Murray–Darling Basin: Directions for research

Effective natural resource management requires knowledge exchange between researchers and managers to support evidence‐based decision‐making. To achieve this, there is a need to align research with management and policy needs. This project aimed to identify the flow‐related ecological knowledge needs for freshwater fish to better inform environmental water management in the Murray–Darling Basin, south‐eastern Australia. Our major objective was to provide an up‐to‐date assessment of scientific research and integrate this with the knowledge requirements of relevant managers to guide future research. We reviewed the contemporary scientific literature and engaged managers specifically responsible for delivering flows for fish outcomes via a questionnaire and workshop. Research on fishes of the MDB has generally evolved from single locations and/or times to larger spatio‐temporal scales, including multiple sites, rivers and catchments. There has also been a trend from single life stage studies to incorporation of multiple life stages and population processes. There remain, however, significant deficiencies in knowledge for most native species, many of which are threatened. Four agreed key knowledge gaps were derived from the literature review and managers’ suggestions: (i) population dynamics, (ii) movement, dispersal and connectivity, (iii) survival and recruitment to adults and (iv) recruitment drivers. To inform policy and management, managers desired timely advice, based on robust research and monitoring. Fish species of most relevance to managers were those highly regarded by community stakeholders and whose life histories and population dynamics are potentially influenced by flow. Populations of these mostly large‐bodied, angling species (e.g. Murray Cod, Golden Perch and Silver Perch) have declined, often due to river regulation and, in conjunction with managers’ priorities, are relevant candidates for research to support the management of flow to rehabilitate fish populations in the MDB.     

The Influence of Discharge on Duration,Ascent Distance,and Fidelity of the Spawning Migration for Paddlefish of the Yellowstone-Sakakawea Stock,Montana and North Dakota,USA

Paddlefish, Polyodon spathula, of the Yellowstone-Sakakawea stock, Missouri and Yellowstone Rivers, Montana and North Dakota, were radio-tagged to assess the influence of spring discharge on duration of river residency, ascent distance, and site-fidelity during spawning migrations of 1999–2002. Contrary to expectations and reported results from other paddlefish populations, fish remained in the river for similar periods of time and ascended to similar reaches in years of higher, more sustained discharge and in years of lower, more fluctuating discharge. In all years, 65 of the 74 migrants (88%) restricted their ascent to reaches below Yellowstone River kilometer (YRkm) 55; only six migrants were found to further ascend to upriver reaches within 20 river kilometers (rkm) of the Intake Diversion Dam (YRkm 114). The lack of detectable annual differences in ascent distance over the study period despite annual differences in Yellowstone River spring flow regimes may have been partially attributed to the apparent site-fidelity demonstrated by the tagged fish over the study period. Ten of the 22 paddlefish contacted in more than one spring migration repeatedly limited their upriver movement to sites that were within 10 rkm of each other. In addition, similar to the reproductive homing tendencies documented in other large-river migratory fishes, site-fidelity occurred in different reaches of the river system. Results from this study suggest that, in years of moderate discharge, site-fidelity may be as influential as the spring flow regime in determining the reaches to which migratory paddlefish ascend. Further research is needed to investigate potential differential spawning success in fish that return to different reaches of the lower Yellowstone River.